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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919834
Clone id YMU001_000129_F09
Library
Length 551
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000129_F09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCCTCGAGTTTGGCAGCTTCCATCAGTGAGCTGCAGAGTGACTATATTTTCTACACGTGT
ACCAATTTTAGCTCCTTTTTCCAAAGTTAGCCTCTGCCTCTGCCCTGGCCAGTACCCCTC
TCTACCATTACCAATACCTGTGCTGATGTCATTTTTTTCTTGGAACCACTTGCTCCATAT
ACACTGCCTCAAGGTTTGTTAGTGCAATCATTGATAAATCTTTCCCTTCTTAAAATGATG
AATCCTAATACCATAGTTATTCCATATATGCCCATATGCCTTGCAATATTTGCACTATGA
GCACTCATCATATTTGTGGTCTCTCGATCTGCATTTTGAGCACCACATCTCCATCTTTTT
GACTGAAGACCTTGTCTTAGTCATTTCAACAATTTGCTTTGACATTTCTTCTAGCTTTCT
AGTCAACGATCCCTATTTCTTGCTTTATCTTTTCCATTTGAGTCGCTCTCCGATGAGTTG
AAAGTAGTATTGGACTCTGACCCTTCATATGACGAATCATTGTCACTGGATTGTATTTTC
CTGTGGCCTCT
■■Homology search results ■■ -
sp_hit_id Q96ED9
Definition sp|Q96ED9|HOOK2_HUMAN Protein Hook homolog 2 OS=Homo sapiens
Align length 43
Score (bit) 30.8
E-value 4.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919834|Adiantum capillus-veneris mRNA, clone:
YMU001_000129_F09.
         (551 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q96ED9|HOOK2_HUMAN Protein Hook homolog 2 OS=Homo sapiens GN=...    31   4.6  
sp|Q9P2M7|CING_HUMAN Cingulin OS=Homo sapiens GN=CGN PE=1 SV=2         30   6.0  
sp|Q9DAG5|CB061_MOUSE Uncharacterized protein C2orf61 homolog OS...    30   6.0  

>sp|Q96ED9|HOOK2_HUMAN Protein Hook homolog 2 OS=Homo sapiens
           GN=HOOK2 PE=1 SV=2
          Length = 719

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -3

Query: 432 GSLTRKLEEMSKQIVEMT-KTRSSVKKMEMWCSKCRSRDHKYD 307
           GSL  +LE   +Q+ E+  + +    K E W  +CR+ + KY+
Sbjct: 356 GSLRAQLEAQRRQVQELQGQLQEEAMKAEKWLFECRNLEEKYE 398


>sp|Q9P2M7|CING_HUMAN Cingulin OS=Homo sapiens GN=CGN PE=1 SV=2
          Length = 1197

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -3

Query: 432 GSLTRKLEEMSKQIVEMTKTRSSVKKMEMWCSKCRSRDHKYDECS 298
           G LTRK+EE+ +++ E  K R  ++  ++     R  + K +ECS
Sbjct: 356 GELTRKVEELQRKLDEEVKKRQKLEPSQVGLE--RQLEEKTEECS 398


>sp|Q9DAG5|CB061_MOUSE Uncharacterized protein C2orf61 homolog
           OS=Mus musculus PE=2 SV=1
          Length = 247

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +2

Query: 89  SLCLCPGQYPSLPLPIP 139
           SL LCPGQY  LP P+P
Sbjct: 135 SLHLCPGQYEVLPAPVP 151
tr_hit_id A9SZG8
Definition tr|A9SZG8|A9SZG8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 46
Score (bit) 38.1
E-value 0.31
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919834|Adiantum capillus-veneris mRNA, clone:
YMU001_000129_F09.
         (551 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SZG8|A9SZG8_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.31 
tr|A5CAM6|A5CAM6_VITVI Putative uncharacterized protein OS=Vitis...    38   0.41 
tr|A5CAM5|A5CAM5_VITVI Putative uncharacterized protein OS=Vitis...    38   0.41 
tr|A9SU88|A9SU88_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.53 
tr|A9RE88|A9RE88_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.53 
tr|A5BFM4|A5BFM4_VITVI Putative uncharacterized protein OS=Vitis...    37   0.90 
tr|A9U3M7|A9U3M7_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.2  
tr|A9T9U8|A9T9U8_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.2  
tr|A8N8Y9|A8N8Y9_COPC7 Putative uncharacterized protein OS=Copri...    36   1.2  
tr|A9U2D3|A9U2D3_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.5  
tr|A9T3M4|A9T3M4_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.5  
tr|A9RRE8|A9RRE8_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.5  
tr|A5BKV9|A5BKV9_VITVI Putative uncharacterized protein OS=Vitis...    36   1.5  
tr|A5BQV1|A5BQV1_VITVI Putative uncharacterized protein OS=Vitis...    35   2.0  
tr|A5C8C3|A5C8C3_VITVI Putative uncharacterized protein OS=Vitis...    35   2.6  
tr|A5BYH2|A5BYH2_VITVI Putative uncharacterized protein OS=Vitis...    35   2.6  
tr|A5BS25|A5BS25_VITVI Putative uncharacterized protein OS=Vitis...    35   2.6  
tr|A5ALB8|A5ALB8_VITVI Putative uncharacterized protein OS=Vitis...    35   2.6  
tr|B7K8Z4|B7K8Z4_9CHRO ABC transporter related OS=Cyanothece sp....    35   3.4  
tr|A9TUV2|A9TUV2_PHYPA Predicted protein OS=Physcomitrella paten...    35   3.4  
tr|A9TRA3|A9TRA3_PHYPA Predicted protein OS=Physcomitrella paten...    35   3.4  
tr|A9TDV8|A9TDV8_PHYPA Predicted protein OS=Physcomitrella paten...    35   3.4  
tr|A9T3W8|A9T3W8_PHYPA Predicted protein OS=Physcomitrella paten...    35   3.4  
tr|A9S971|A9S971_PHYPA Predicted protein OS=Physcomitrella paten...    35   3.4  
tr|A9RUU5|A9RUU5_PHYPA Predicted protein OS=Physcomitrella paten...    35   3.4  
tr|A5C4P4|A5C4P4_VITVI Putative uncharacterized protein OS=Vitis...    35   3.4  
tr|A5BHU4|A5BHU4_VITVI Putative uncharacterized protein OS=Vitis...    35   3.4  
tr|A5BDC5|A5BDC5_VITVI Putative uncharacterized protein OS=Vitis...    35   3.4  
tr|Q928S3|Q928S3_LISIN Lin2459 protein OS=Listeria innocua GN=li...    34   4.5  
tr|A9U2K3|A9U2K3_PHYPA Predicted protein OS=Physcomitrella paten...    34   4.5  

>tr|A9SZG8|A9SZG8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_86135 PE=4 SV=1
          Length = 431

 Score = 38.1 bits (87), Expect = 0.31
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = -3

Query: 429 SLTRKLEEMSKQIVEMTKTRSSVKKME--MWCSKCRSRDHKYDECS 298
           +LT+K++E++  +V+ T+ R     M   +WCS C+ + H   ECS
Sbjct: 329 TLTKKMDELAVNLVKDTEKRHKPTNMRPNVWCSNCKGQGHLVTECS 374


>tr|A5CAM6|A5CAM6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_041893 PE=4 SV=1
          Length = 188

 Score = 37.7 bits (86), Expect = 0.41
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = -3

Query: 438 K*GSLTRKLEEMSKQIVEMTKTRSSVKKMEMWCSKCRSRDHKYDECS*CKYCKAYGHIWN 259
           K  ++ R+LEE+  + ++  +T S    + M CS CRS +H  DEC      +     WN
Sbjct: 47  KIAAMARRLEELEMKNMQEMQTISQTPLLPMPCSICRSYEHLVDECPTIPAEREMFGDWN 106

Query: 258 NY 253
            Y
Sbjct: 107 TY 108


>tr|A5CAM5|A5CAM5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_041892 PE=4 SV=1
          Length = 219

 Score = 37.7 bits (86), Expect = 0.41
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = -3

Query: 438 K*GSLTRKLEEMSKQIVEMTKTRSSVKKMEMWCSKCRSRDHKYDECS*CKYCKAYGHIWN 259
           K  ++ R+LEE+  + ++  +T S    + M CS CRS +H  DEC      +     WN
Sbjct: 78  KIAAMARRLEELEMKNMQEMQTISQTPLLPMPCSICRSYEHLVDECPTIPAEREMFGDWN 137

Query: 258 NY 253
            Y
Sbjct: 138 TY 139


>tr|A9SU88|A9SU88_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_84060 PE=4 SV=1
          Length = 510

 Score = 37.4 bits (85), Expect = 0.53
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -3

Query: 429 SLTRKLEEMSKQIVEMTKTRSSVK--KMEMWCSKCRSRDHKYDEC 301
           +LT+K+EEM+    +  K R      +  +WCS C+  DH   EC
Sbjct: 241 NLTKKMEEMAVNTAKDKKKRQKPTNTRTNVWCSNCKGHDHSITEC 285


>tr|A9RE88|A9RE88_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_64955 PE=4 SV=1
          Length = 570

 Score = 37.4 bits (85), Expect = 0.53
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -3

Query: 429 SLTRKLEEMSKQIVEMTKTRSSVK--KMEMWCSKCRSRDHKYDEC 301
           +LT+K+EEM+  + +  K R      +  +WCS C+  DH   EC
Sbjct: 166 NLTKKMEEMAVNMAKDKKKRQKPTNTRTNVWCSNCKGYDHSITEC 210


>tr|A5BFM4|A5BFM4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_017323 PE=4 SV=1
          Length = 347

 Score = 36.6 bits (83), Expect = 0.90
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = -3

Query: 438 K*GSLTRKLEEMSKQIVEMTKTRSSVKKMEMWCSKCRSRDHKYDECS 298
           K  ++ R+LEE+  + ++  +  S    + M CS CRS +H  DECS
Sbjct: 47  KIAAMARRLEELEMKNMQEVQVISQTPLLPMPCSICRSYEHLVDECS 93


>tr|A9U3M7|A9U3M7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_101413 PE=4 SV=1
          Length = 702

 Score = 36.2 bits (82), Expect = 1.2
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -3

Query: 429 SLTRKLEEMSKQIVEMTKTRSSVKKME--MWCSKCRSRDHKYDECS 298
           +LT+K+ E++  + +  + R     M   +WCS C+ +DH   ECS
Sbjct: 81  TLTKKMSELAVNLAKDKEKRHKPTNMRPNVWCSNCKEQDHLVTECS 126


>tr|A9T9U8|A9T9U8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_89964 PE=4 SV=1
          Length = 282

 Score = 36.2 bits (82), Expect = 1.2
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
 Frame = -3

Query: 429 SLTRKLEEMSKQIVEMTKTRSSVKK-----MEMWCSKCRSRDHKYDECS 298
           +LT+K+EEM+   V M K +   +K       +WCS C+   H   ECS
Sbjct: 64  NLTKKMEEMA---VNMAKDKEKRQKPTNTRTNVWCSNCKGHSHSVTECS 109


>tr|A8N8Y9|A8N8Y9_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_00864 PE=4 SV=1
          Length = 285

 Score = 36.2 bits (82), Expect = 1.2
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = -3

Query: 276 YGHIWNNYGIRIHHFKKGKIYQ*LH*QTLRQCIWSK----WFQEKNDIS 142
           + H+WNN GIR+ HF +G+I   +  Q  +  +W K    W  +  D+S
Sbjct: 179 FAHLWNNEGIRMWHFPRGEIPADIEAQQPQPDLWGKPVAFWSSKTCDMS 227


>tr|A9U2D3|A9U2D3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_100682 PE=4 SV=1
          Length = 394

 Score = 35.8 bits (81), Expect = 1.5
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
 Frame = -3

Query: 426 LTRKLEEMSKQIVEMTKTRSSVKKME--MWCSKCRSRDHKYDECS-------*CKYCKAY 274
           LT+K+++++  + +  + R     M   +WCS C+ + H   ECS        C +C+  
Sbjct: 318 LTKKMDQLAVNLAKDKEKRHKPTNMRPNVWCSNCKGQGHLITECSSPPQMMVPCTFCRGK 377

Query: 273 GHIWNNYGIR 244
             I N + +R
Sbjct: 378 DTIANCWNLR 387