BP919842 |
Clone id |
YMU001_000129_G07 |
Library |
YMU01 |
Length |
567 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000129_G07. |
Accession |
BP919842 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
ATGTACTTGCTGGGATTACATGAAGATTACCATTGGGCCTTAATCAAGGATAAAGCCCAG ACTGACGTCGAGGATGTAGTGACAAAGGCCAGGACGTTCCATTTGATAAATGGAGCGAAT TATGAGAAGAAAAGAACTTTAGACCATCAATCCGGTGAGGGCGCTTCGAGGAAGCGACCC CGATTCCAGCACAGTCCAAATCACCGTCGTCGAGATCTTCTCAGAAGAAGACGAAAGCCA AAAATGCCTCAGTTGCTGATGAAGTGAAGAAGGGGGCTTGCTTCGGATGTGGCCAGACGG GTCACCAAATGAAGGATTGCCCCAAGAAGAAGACAAAGAAATCAAGTATTGAGAACTGAG AAGCTTTATGCTAAGGCTTCCAAGTGTGGATTCTTCGAGAAAGAGCTTCTGTACTTGGGT CACATCATTACTCGCGATGGAATTCGCATTGACCCTGAAAAGTTGGATAAAGTGCCGAAT TGGCCCATTCTGAAGAATGTGCGCCAAGTAAAGTCCTTTTGTGGCTTTACTGGATTCTTT CGCAAATTTATCAAGGATTACTCTAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P92523 |
Definition |
sp|P92523|M860_ARATH Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana |
Align length |
77 |
Score (bit) |
72.0 |
E-value |
2.0e-12 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q53P05 |
Definition |
tr|Q53P05|Q53P05_ORYSJ Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica |
Align length |
77 |
Score (bit) |
86.3 |
E-value |
1.0e-15 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP919842|Adiantum capillus-veneris mRNA, clone: YMU001_000129_G07. (567 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q53P05|Q53P05_ORYSJ Retrotransposon protein, putative, unclas... 86 1e-15 tr|A5JSC4|A5JSC4_MAIZE Polyprotein OS=Zea mays PE=4 SV=1 86 1e-15 tr|Q9T0B7|Q9T0B7_ARATH Putative reverse-transcriptase-like prote... 84 4e-15 tr|Q9SY43|Q9SY43_ARATH Putative reverse transcriptase OS=Arabido... 84 4e-15 tr|Q4QXS8|Q4QXS8_HORVD Polyprotein OS=Hordeum vulgare var. disti... 84 4e-15 tr|Q2HW78|Q2HW78_MEDTR RNA-directed DNA polymerase (Reverse tran... 84 5e-15 tr|O81490|O81490_ARATH F9D12.11 protein OS=Arabidopsis thaliana ... 84 5e-15 tr|Q9AXC5|Q9AXC5_ANTHI Putative uncharacterized protein OS=Antir... 83 9e-15 tr|Q9SJ92|Q9SJ92_ARATH Putative retroelement pol polyprotein OS=... 83 1e-14 tr|Q9LKU4|Q9LKU4_ARATH Putative uncharacterized protein T32B20.f... 83 1e-14 tr|Q2R4W7|Q2R4W7_ORYSJ Retrotransposon protein, putative, Ty3-gy... 83 1e-14 tr|Q8W1D1|Q8W1D1_MAIZE Gag-pol OS=Zea mays PE=4 SV=1 82 2e-14 tr|Q7XX57|Q7XX57_ORYSJ OSJNBb0049I21.6 protein OS=Oryza sativa s... 82 2e-14 tr|Q7XUA3|Q7XUA3_ORYSJ OSJNBa0019D11.8 protein OS=Oryza sativa s... 82 2e-14 tr|Q2R1L3|Q2R1L3_ORYSJ Retrotransposon protein, putative, Ty3-gy... 82 2e-14 tr|Q2QR60|Q2QR60_ORYSJ Retrotransposon protein, putative, Ty3-gy... 82 2e-14 tr|Q2MCK3|Q2MCK3_CITSI Polyprotein (Fragment) OS=Citrus sinensis... 82 2e-14 tr|Q01I31|Q01I31_ORYSA OSIGBa0145G11.8 protein OS=Oryza sativa G... 82 2e-14 tr|Q2RB45|Q2RB45_ORYSJ Retrotransposon protein, putative, Ty3-gy... 82 2e-14 tr|Q9LQH2|Q9LQH2_ARATH F15O4.13 OS=Arabidopsis thaliana PE=4 SV=1 82 3e-14 tr|Q0J5A3|Q0J5A3_ORYSJ Os08g0451600 protein (Fragment) OS=Oryza ... 82 3e-14 tr|O64892|O64892_ANACO Polyprotein (Fragment) OS=Ananas comosus ... 82 3e-14 tr|B7F795|B7F795_ORYSJ cDNA clone:J023142E02, full insert sequen... 82 3e-14 tr|B5U9W4|B5U9W4_LOTJA Putative uncharacterized protein OS=Lotus... 82 3e-14 tr|B5U9W2|B5U9W2_LOTJA Putative uncharacterized protein OS=Lotus... 82 3e-14 tr|B5U9W1|B5U9W1_LOTJA Putative uncharacterized protein OS=Lotus... 82 3e-14 tr|B5U9W0|B5U9W0_LOTJA Putative uncharacterized protein OS=Lotus... 82 3e-14 tr|B5U9V8|B5U9V8_LOTJA Putative uncharacterized protein OS=Lotus... 82 3e-14 tr|B5U9V7|B5U9V7_LOTJA Putative uncharacterized protein OS=Lotus... 82 3e-14 tr|A5X2S4|A5X2S4_9ERIC Polyprotein OS=Primula vulgaris PE=4 SV=1 82 3e-14
>tr|Q53P05|Q53P05_ORYSJ Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica PE=4 SV=1 Length = 1126
Score = 86.3 bits (212), Expect = 1e-15 Identities = 37/77 (48%), Positives = 54/77 (70%) Frame = +1
Query: 331 RQRNQVLRTEKLYAKASKCGFFEKELLYLGHIITRDGIRIDPEKLDKVPNWPILKNVRQV 510 RQ Q+L+ +L+ KASKC F +++L YLGHII G+ DP K+ V WP+ KN++Q+ Sbjct: 815 RQVFQILQHHQLFVKASKCSFAKQQLEYLGHIIGEHGVATDPAKVQAVQEWPVPKNLKQL 874
Query: 511 KSFCGFTGFFRKFIKDY 561 + F G TG++RKFI+ Y Sbjct: 875 RGFLGLTGYYRKFIRHY 891
>tr|A5JSC4|A5JSC4_MAIZE Polyprotein OS=Zea mays PE=4 SV=1 Length = 1476
Score = 86.3 bits (212), Expect = 1e-15 Identities = 38/75 (50%), Positives = 54/75 (72%) Frame = +1
Query: 343 QVLRTEKLYAKASKCGFFEKELLYLGHIITRDGIRIDPEKLDKVPNWPILKNVRQVKSFC 522 Q LR LYAK SKC F+ KE+ +LGH I++DGI +DP+K+ +V NW VRQ++SF Sbjct: 718 QRLREHHLYAKLSKCDFWLKEIKFLGHTISQDGIAVDPDKVQEVMNWRPPTTVRQIRSFL 777
Query: 523 GFTGFFRKFIKDYSK 567 G G++R+FI D+S+ Sbjct: 778 GLAGYYRRFIPDFSR 792
>tr|Q9T0B7|Q9T0B7_ARATH Putative reverse-transcriptase-like protein OS=Arabidopsis thaliana GN=T4F9.40 PE=2 SV=1 Length = 1240
Score = 84.3 bits (207), Expect = 4e-15 Identities = 31/78 (39%), Positives = 59/78 (75%) Frame = +1
Query: 331 RQRNQVLRTEKLYAKASKCGFFEKELLYLGHIITRDGIRIDPEKLDKVPNWPILKNVRQV 510 R+ + LR +KL+AK SKC F+++E+ +LGHI++ +G+ +DPEK++ + +WP N ++ Sbjct: 662 RRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWPRPTNATEI 721
Query: 511 KSFCGFTGFFRKFIKDYS 564 +SF G+ G++R+F+K ++ Sbjct: 722 RSFLGWAGYYRRFVKGFA 739
>tr|Q9SY43|Q9SY43_ARATH Putative reverse transcriptase OS=Arabidopsis thaliana GN=T5L23.15 PE=2 SV=1 Length = 839
Score = 84.3 bits (207), Expect = 4e-15 Identities = 32/78 (41%), Positives = 58/78 (74%) Frame = +1
Query: 331 RQRNQVLRTEKLYAKASKCGFFEKELLYLGHIITRDGIRIDPEKLDKVPNWPILKNVRQV 510 R+ + LR +KL+AK SKC F+++E+ +LGHI++ +G+ +DPEK++ + +WP N ++ Sbjct: 587 RRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWPRPTNATEI 646
Query: 511 KSFCGFTGFFRKFIKDYS 564 +SF G G++R+FIK ++ Sbjct: 647 RSFLGLAGYYRRFIKGFA 664
>tr|Q4QXS8|Q4QXS8_HORVD Polyprotein OS=Hordeum vulgare var. distichum PE=4 SV=1 Length = 1486
Score = 84.3 bits (207), Expect = 4e-15 Identities = 36/73 (49%), Positives = 55/73 (75%) Frame = +1
Query: 349 LRTEKLYAKASKCGFFEKELLYLGHIITRDGIRIDPEKLDKVPNWPILKNVRQVKSFCGF 528 LR KLYAK SKC F+ KE++YLGHII+ +GI++DP K+ + W +NV+Q++SF G Sbjct: 735 LREYKLYAKFSKCEFWLKEVVYLGHIISAEGIKVDPSKVQAIVEWEPPQNVKQLRSFLGL 794
Query: 529 TGFFRKFIKDYSK 567 G+ R+F++++SK Sbjct: 795 AGYCRRFVENFSK 807
>tr|Q2HW78|Q2HW78_MEDTR RNA-directed DNA polymerase (Reverse transcriptase) OS=Medicago truncatula GN=MtrDRAFT_AC147774g16v1 PE=4 SV=1 Length = 579
Score = 84.0 bits (206), Expect = 5e-15 Identities = 36/75 (48%), Positives = 55/75 (73%) Frame = +1
Query: 343 QVLRTEKLYAKASKCGFFEKELLYLGHIITRDGIRIDPEKLDKVPNWPILKNVRQVKSFC 522 QVL+ +KLYAK SKC F+ KE+ +LGH+I+ DGI +DP K++ V W K+V +++S Sbjct: 374 QVLKEKKLYAKLSKCEFWLKEVSFLGHVISGDGIVVDPSKVEAVSQWETPKSVTEIRSLL 433
Query: 523 GFTGFFRKFIKDYSK 567 G G++R+FI+ +SK Sbjct: 434 GLAGYYRRFIEGFSK 448
>tr|O81490|O81490_ARATH F9D12.11 protein OS=Arabidopsis thaliana GN=F9D12.11 PE=4 SV=1 Length = 1322
Score = 84.0 bits (206), Expect = 5e-15 Identities = 31/78 (39%), Positives = 58/78 (74%) Frame = +1
Query: 331 RQRNQVLRTEKLYAKASKCGFFEKELLYLGHIITRDGIRIDPEKLDKVPNWPILKNVRQV 510 R+ + LR +KL+AK SKC F+++E+ +LGHI++ +G+ +DPEK++ + +WP N ++ Sbjct: 694 RRVKEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWPRPTNAVEI 753
Query: 511 KSFCGFTGFFRKFIKDYS 564 +SF G G++R+F+K ++ Sbjct: 754 RSFLGLAGYYRRFVKGFA 771
>tr|Q9AXC5|Q9AXC5_ANTHI Putative uncharacterized protein OS=Antirrhinum hispanicum PE=4 SV=1 Length = 1299
Score = 83.2 bits (204), Expect = 9e-15 Identities = 33/75 (44%), Positives = 54/75 (72%) Frame = +1
Query: 343 QVLRTEKLYAKASKCGFFEKELLYLGHIITRDGIRIDPEKLDKVPNWPILKNVRQVKSFC 522 QVL+ KLYAK SKC F+ + + +LGH+I++ + +DP K++ + +W KN +V+SF Sbjct: 723 QVLKYNKLYAKFSKCEFWLERVTFLGHVISKKWVEVDPSKIESITDWKQPKNATEVRSFL 782
Query: 523 GFTGFFRKFIKDYSK 567 G G++R+F+KD+SK Sbjct: 783 GLAGYYRRFVKDFSK 797
>tr|Q9SJ92|Q9SJ92_ARATH Putative retroelement pol polyprotein OS=Arabidopsis thaliana GN=At2g04670 PE=2 SV=1 Length = 1411
Score = 82.8 bits (203), Expect = 1e-14 Identities = 31/78 (39%), Positives = 58/78 (74%) Frame = +1
Query: 331 RQRNQVLRTEKLYAKASKCGFFEKELLYLGHIITRDGIRIDPEKLDKVPNWPILKNVRQV 510 R+ + LR +KL+AK SKC F+++E+ +LGHI++ +G+ +DPEK++ + +WP N ++ Sbjct: 688 RRVMEKLREQKLFAKLSKCSFWQREIGFLGHIVSAEGVSVDPEKIEAIRDWPRPTNATEI 747
Query: 511 KSFCGFTGFFRKFIKDYS 564 +SF TG++R+F+K ++ Sbjct: 748 RSFLRLTGYYRRFVKGFA 765
>tr|Q9LKU4|Q9LKU4_ARATH Putative uncharacterized protein T32B20.f OS=Arabidopsis thaliana GN=T32B20.f PE=4 SV=1 Length = 1504
Score = 82.8 bits (203), Expect = 1e-14 Identities = 31/78 (39%), Positives = 58/78 (74%) Frame = +1
Query: 331 RQRNQVLRTEKLYAKASKCGFFEKELLYLGHIITRDGIRIDPEKLDKVPNWPILKNVRQV 510 R+ + LR EKL+AK SKC F+++++ +LGHI++ +G+ +DPEK++ + +WP N ++ Sbjct: 789 RRVMEKLREEKLFAKLSKCSFWQRKMGFLGHIVSVEGVSVDPEKIEAIRDWPRPTNATEI 848
Query: 511 KSFCGFTGFFRKFIKDYS 564 +SF G G++R+F+K ++ Sbjct: 849 RSFLGLAGYYRRFVKGFA 866
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