BP919847
Clone id YMU001_000129_H01
Library
Length 512
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000129_H01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GGCAATTAAAGACCCGAGTGCACTGGAGAAGGAAATAAATATGATTCCTGGTGTGGTTGA
GAATGGTCTTTTCATTGGTGTTGCTAATTCAGTACTAGTAGGTACTCAAGATGGTGACGA
TATCCAAGTTGTAGAGCTTGCTGAGTTTGTTAGTAGTTTAAAAAGTGCAAAGGAAGTGTA
GGTGGTCTTATTAGAGACTAGGCAAGAGTTGGAGATGATCATTGCCAATTTTACTATTGA
GGGTGATGATCAGTCCTTTTAATGTAGAGGTAGTAGGCCTTGCTGAAATAATAGAACAAA
AGCGCTAATTTTGTACAGCCGCCGGATTATTCATAGGCGAAATAAGAGAATCTAGGCATT
GATTGCGAACTGATCTCGGCTTCCTTTTTTGTCTCCCTAAGCTGGCTGGAACATGTGTCC
AGTACATCTTCAACTGTTGACTACCATTGGGTCAGTATATGGATTAATCTTTGGATATTC
ATAATTATGACACCTTGGATCAAAGGAGTTGA
■■Homology search results ■■ -
sp_hit_id A5GNH7
Definition sp|A5GNH7|RPIA_SYNPW Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain WH7803)
Align length 37
Score (bit) 54.3
E-value 3.0e-07
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919847|Adiantum capillus-veneris mRNA, clone:
YMU001_000129_H01.
(512 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A5GNH7|RPIA_SYNPW Ribose-5-phosphate isomerase A OS=Synechoco... 54 3e-07
sp|Q5N3J1|RPIA_SYNP6 Ribose-5-phosphate isomerase A OS=Synechoco... 54 3e-07
sp|Q3ITP9|RPIA_NATPD Ribose-5-phosphate isomerase A OS=Natronomo... 53 9e-07
sp|A7HS32|RPIA_PARL1 Ribose-5-phosphate isomerase A OS=Parvibacu... 51 4e-06
sp|P72012|RPIA_METTH Ribose-5-phosphate isomerase A OS=Methanoba... 51 4e-06
sp|Q8DJF2|RPIA_THEEB Ribose-5-phosphate isomerase A OS=Thermosyn... 50 8e-06
sp|Q55766|RPIA_SYNY3 Ribose-5-phosphate isomerase A OS=Synechocy... 49 1e-05
sp|A5GVF8|RPIA_SYNR3 Ribose-5-phosphate isomerase A OS=Synechoco... 49 1e-05
sp|Q5JH26|RPIA_PYRKO Ribose-5-phosphate isomerase A OS=Pyrococcu... 49 1e-05
sp|Q0I7L2|RPIA_SYNS3 Ribose-5-phosphate isomerase A OS=Synechoco... 49 2e-05
sp|Q8U1F0|RPIA_PYRFU Ribose-5-phosphate isomerase A OS=Pyrococcu... 49 2e-05
sp|Q7V003|RPIA_PROMP Ribose-5-phosphate isomerase A OS=Prochloro... 48 2e-05
sp|Q5UZD7|RPIA_HALMA Ribose-5-phosphate isomerase A OS=Haloarcul... 48 2e-05
sp|Q9V0L6|RPIA_PYRAB Ribose-5-phosphate isomerase A OS=Pyrococcu... 48 3e-05
sp|Q9HN33|RPIA_HALSA Ribose-5-phosphate isomerase A OS=Halobacte... 48 3e-05
sp|O50083|RPIA_PYRHO Ribose-5-phosphate isomerase A OS=Pyrococcu... 47 4e-05
sp|Q3AHX1|RPIA_SYNSC Ribose-5-phosphate isomerase A OS=Synechoco... 47 5e-05
sp|Q3AZA8|RPIA_SYNS9 Ribose-5-phosphate isomerase A OS=Synechoco... 47 5e-05
sp|Q7U8K8|RPIA_SYNPX Ribose-5-phosphate isomerase A OS=Synechoco... 46 9e-05
sp|Q7VA25|RPIA_PROMA Ribose-5-phosphate isomerase A OS=Prochloro... 46 1e-04
sp|Q318Q3|RPIA_PROM9 Ribose-5-phosphate isomerase A OS=Prochloro... 46 1e-04
sp|Q89NS9|RPIA_BRAJA Ribose-5-phosphate isomerase A OS=Bradyrhiz... 44 3e-04
sp|Q8K9E2|RPIA_BUCAP Ribose-5-phosphate isomerase A OS=Buchnera ... 44 4e-04
sp|Q3M4J7|RPIA_ANAVT Ribose-5-phosphate isomerase A OS=Anabaena ... 44 4e-04
sp|Q8YYG2|RPIA_ANASP Ribose-5-phosphate isomerase A OS=Anabaena ... 44 4e-04
sp|Q58998|RPIA_METJA Ribose-5-phosphate isomerase A OS=Methanoca... 44 6e-04
sp|Q7NPM5|RPIA_GLOVI Ribose-5-phosphate isomerase A OS=Gloeobact... 43 7e-04
sp|A4VWC6|RPIA_STRSY Ribose-5-phosphate isomerase A OS=Streptoco... 43 0.001
sp|A4W2M7|RPIA_STRS2 Ribose-5-phosphate isomerase A OS=Streptoco... 43 0.001
sp|Q97AU2|RPIA_THEVO Ribose-5-phosphate isomerase A OS=Thermopla... 42 0.001

>sp|A5GNH7|RPIA_SYNPW Ribose-5-phosphate isomerase A
OS=Synechococcus sp. (strain WH7803) GN=rpiA PE=3 SV=1
Length = 238

Score = 54.3 bits (129), Expect = 3e-07
Identities = 25/37 (67%), Positives = 31/37 (83%)
Frame = +2

Query: 5 IKDPSALEKEINMIPGVVENGLFIGVANSVLVGTQDG 115
I DP++LEKEIN IPGV+ENGLF+ +A+ VLVG DG
Sbjct: 190 IADPASLEKEINNIPGVLENGLFVNLADEVLVGQIDG 226


>sp|Q5N3J1|RPIA_SYNP6 Ribose-5-phosphate isomerase A
OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 /
SAUG 1402/1) GN=rpiA PE=3 SV=2
Length = 232

Score = 54.3 bits (129), Expect = 3e-07
Identities = 26/44 (59%), Positives = 32/44 (72%)
Frame = +2

Query: 5 IKDPSALEKEINMIPGVVENGLFIGVANSVLVGTQDGDDIQVVE 136
I P+ LEK IN IPGV+ENGLF+G+ + VLVG DGD + V E
Sbjct: 188 IDQPAELEKAINNIPGVLENGLFVGLTDLVLVGEVDGDRVSVRE 231


>sp|Q3ITP9|RPIA_NATPD Ribose-5-phosphate isomerase A OS=Natronomonas
pharaonis (strain DSM 2160 / ATCC 35678) GN=rpiA PE=3
SV=1
Length = 225

Score = 52.8 bits (125), Expect = 9e-07
Identities = 21/41 (51%), Positives = 34/41 (82%)
Frame = +2

Query: 5 IKDPSALEKEINMIPGVVENGLFIGVANSVLVGTQDGDDIQ 127
I +P+AL +E++ +PG VE+GLF+G+A+ +LVGT DG D++
Sbjct: 185 IAEPAALAEELSALPGAVEHGLFVGLADEILVGTDDGVDVR 225


>sp|A7HS32|RPIA_PARL1 Ribose-5-phosphate isomerase A OS=Parvibaculum
lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966)
GN=rpiA PE=3 SV=1
Length = 231

Score = 50.8 bits (120), Expect = 4e-06
Identities = 23/41 (56%), Positives = 28/41 (68%)
Frame = +2

Query: 2 AIKDPSALEKEINMIPGVVENGLFIGVANSVLVGTQDGDDI 124
+I DP L +N IPGVV+NGLFIG+A +VGT G DI
Sbjct: 188 SIPDPDGLSAALNRIPGVVDNGLFIGIAAMAIVGTDKGTDI 228


>sp|P72012|RPIA_METTH Ribose-5-phosphate isomerase A
OS=Methanobacterium thermoautotrophicum GN=rpiA PE=3
SV=1
Length = 226

Score = 50.8 bits (120), Expect = 4e-06
Identities = 21/37 (56%), Positives = 28/37 (75%)
Frame = +2

Query: 5 IKDPSALEKEINMIPGVVENGLFIGVANSVLVGTQDG 115
I DP A+E +N IPGVVENG+F G+A+ V+ GT +G
Sbjct: 185 IDDPGAMESRLNNIPGVVENGIFAGIADMVIAGTSEG 221


>sp|Q8DJF2|RPIA_THEEB Ribose-5-phosphate isomerase A
OS=Thermosynechococcus elongatus (strain BP-1) GN=rpiA
PE=3 SV=1
Length = 236

Score = 49.7 bits (117), Expect = 8e-06
Identities = 26/45 (57%), Positives = 31/45 (68%)
Frame = +2

Query: 5 IKDPSALEKEINMIPGVVENGLFIGVANSVLVGTQDGDDIQVVEL 139
I DP+ LEK IN IPGVVENGLF+ VA+ +LVG QV E+
Sbjct: 190 IPDPAELEKAINNIPGVVENGLFVNVADVILVGEIVDGQPQVREI 234


>sp|Q55766|RPIA_SYNY3 Ribose-5-phosphate isomerase A
OS=Synechocystis sp. (strain PCC 6803) GN=rpiA PE=3 SV=1
Length = 235

Score = 49.3 bits (116), Expect = 1e-05
Identities = 22/34 (64%), Positives = 29/34 (85%)
Frame = +2

Query: 2 AIKDPSALEKEINMIPGVVENGLFIGVANSVLVG 103
AI +P+ LEK IN +PGV+ENGLF+GVA+ +LVG
Sbjct: 190 AITNPAELEKTINNLPGVLENGLFVGVADVILVG 223


>sp|A5GVF8|RPIA_SYNR3 Ribose-5-phosphate isomerase A
OS=Synechococcus sp. (strain RCC307) GN=rpiA PE=3 SV=1
Length = 237

Score = 48.9 bits (115), Expect = 1e-05
Identities = 22/33 (66%), Positives = 27/33 (81%)
Frame = +2

Query: 5 IKDPSALEKEINMIPGVVENGLFIGVANSVLVG 103
I DP+ LE IN IPGV+ENGLF+G+A+ VLVG
Sbjct: 190 INDPAGLETTINNIPGVLENGLFVGLADQVLVG 222


>sp|Q5JH26|RPIA_PYRKO Ribose-5-phosphate isomerase A OS=Pyrococcus
kodakaraensis GN=rpiA PE=3 SV=1
Length = 229

Score = 48.9 bits (115), Expect = 1e-05
Identities = 22/37 (59%), Positives = 29/37 (78%)
Frame = +2

Query: 5 IKDPSALEKEINMIPGVVENGLFIGVANSVLVGTQDG 115
I+DP LE E+N IPGVVENG+F +A+ +LVGT +G
Sbjct: 187 IEDPLDLEIELNTIPGVVENGIFADIADIILVGTPEG 223


>sp|Q0I7L2|RPIA_SYNS3 Ribose-5-phosphate isomerase A
OS=Synechococcus sp. (strain CC9311) GN=rpiA PE=3 SV=1
Length = 238

Score = 48.5 bits (114), Expect = 2e-05
Identities = 21/33 (63%), Positives = 28/33 (84%)
Frame = +2

Query: 5 IKDPSALEKEINMIPGVVENGLFIGVANSVLVG 103
I DP ALE++IN +PGV+ENGLF+ +A+ VLVG
Sbjct: 190 ISDPIALERDINNLPGVLENGLFVNLADEVLVG 222


tr_hit_id B8LQR5
Definition tr|B8LQR5|B8LQR5_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 57
Score (bit) 87.4
E-value 4.0e-16
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919847|Adiantum capillus-veneris mRNA, clone:
YMU001_000129_H01.
(512 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B8LQR5|B8LQR5_PICSI Putative uncharacterized protein OS=Picea... 87 4e-16
tr|A9THV8|A9THV8_PHYPA Predicted protein OS=Physcomitrella paten... 83 9e-15
tr|A9TPW9|A9TPW9_PHYPA Predicted protein OS=Physcomitrella paten... 74 4e-12
tr|Q31QQ3|Q31QQ3_SYNE7 Ribose-5-phosphate isomerase OS=Synechoco... 54 3e-06
tr|B4W0N0|B4W0N0_9CYAN Ribose 5-phosphate isomerase A OS=Microco... 52 2e-05
tr|Q05WE3|Q05WE3_9SYNE Ribose 5-phosphate isomerase OS=Synechoco... 51 3e-05
tr|B5ILX5|B5ILX5_9CHRO Ribose 5-phosphate isomerase A OS=Cyanobi... 51 3e-05
tr|B7KIR2|B7KIR2_9CHRO Ribose 5-phosphate isomerase OS=Cyanothec... 51 4e-05
tr|B1DLL6|B1DLL6_9BACL Ribose-5-phosphate isomerase OS=Paenibaci... 50 5e-05
tr|B1XL11|B1XL11_SYNP2 Ribose 5-phosphate isomerase A OS=Synecho... 50 6e-05
tr|B1WZ89|B1WZ89_CYAA5 Ribose 5-phosphate isomerase OS=Cyanothec... 50 6e-05
tr|Q4BYU0|Q4BYU0_CROWT Ribose 5-phosphate isomerase OS=Crocospha... 50 6e-05
tr|B5VU11|B5VU11_SPIMA Ribose 5-phosphate isomerase OS=Arthrospi... 50 6e-05
tr|A4CR10|A4CR10_SYNPV Ribose 5-phosphate isomerase OS=Synechoco... 50 6e-05
tr|A3IQD5|A3IQD5_9CHRO Ribose-5-phosphate isomerase A OS=Cyanoth... 50 6e-05
tr|A9BCI0|A9BCI0_PROM4 Ribose 5-phosphate isomerase OS=Prochloro... 50 8e-05
tr|B7K6D3|B7K6D3_SYNP8 Ribose 5-phosphate isomerase OS=Synechoco... 50 8e-05
tr|B4C5N5|B4C5N5_9CHRO Ribose 5-phosphate isomerase OS=Cyanothec... 50 8e-05
tr|B5IVE8|B5IVE8_9EURY Ribose 5-phosphate isomerase A OS=Thermoc... 50 8e-05
tr|Q111U2|Q111U2_TRIEI Ribose-5-phosphate isomerase OS=Trichodes... 49 1e-04
tr|B1X3N2|B1X3N2_PAUCH Ribose 5-phosphate isomerase OS=Paulinell... 49 1e-04
tr|B6YSW6|B6YSW6_THEON Ribose 5-phosphate isomerase OS=Thermococ... 49 1e-04
tr|A3YVR7|A3YVR7_9SYNE Ribose 5-phosphate isomerase OS=Synechoco... 49 2e-04
tr|B7R2S4|B7R2S4_9EURY Ribose 5-phosphate isomerase A OS=Thermoc... 49 2e-04
tr|B0JM55|B0JM55_MICAN Ribose 5-phosphate isomerase OS=Microcyst... 48 2e-04
tr|A8Y9K5|A8Y9K5_MICAE Genome sequencing data, contig C201 OS=Mi... 48 2e-04
tr|A0YQ73|A0YQ73_9CYAN Ribose-5-phosphate isomerase A OS=Lyngbya... 48 2e-04
tr|Q2NFM0|Q2NFM0_METST RpiA OS=Methanosphaera stadtmanae (strain... 48 2e-04
tr|Q063V9|Q063V9_9SYNE Ribose 5-phosphate isomerase OS=Synechoco... 48 3e-04
tr|B8HN58|B8HN58_9CHRO Ribose 5-phosphate isomerase OS=Cyanothec... 48 3e-04

>tr|B8LQR5|B8LQR5_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 310

Score = 87.4 bits (215), Expect = 4e-16
Identities = 44/57 (77%), Positives = 48/57 (84%)
Frame = +2

Query: 5 IKDPSALEKEINMIPGVVENGLFIGVANSVLVGTQDGDDIQVVELAEFVSSLKSAKE 175
IKDP+ALEK I +IPGVVENGL GVA+SVLV TQDGDDI +VEL EFV SLKS KE
Sbjct: 249 IKDPAALEKRIKLIPGVVENGLVTGVASSVLVATQDGDDITIVELDEFVKSLKSVKE 305


>tr|A9THV8|A9THV8_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_145803 PE=4 SV=1
Length = 316

Score = 82.8 bits (203), Expect = 9e-15
Identities = 38/57 (66%), Positives = 49/57 (85%)
Frame = +2

Query: 5 IKDPSALEKEINMIPGVVENGLFIGVANSVLVGTQDGDDIQVVELAEFVSSLKSAKE 175
+KDP+ +E +INMIPGV++NGLFI VA+ VLVGT+DGD+ VVE AEFVSS+KS+ E
Sbjct: 256 VKDPAEMETKINMIPGVIDNGLFINVAHKVLVGTKDGDETSVVEFAEFVSSMKSSTE 312


>tr|A9TPW9|A9TPW9_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_224305 PE=4 SV=1
Length = 226

Score = 73.9 bits (180), Expect = 4e-12
Identities = 32/56 (57%), Positives = 49/56 (87%)
Frame = +2

Query: 5 IKDPSALEKEINMIPGVVENGLFIGVANSVLVGTQDGDDIQVVELAEFVSSLKSAK 172
+K+P+ LE++INMIPGVVENGLF+ VA++VLVGT+DG++ VV A+FV +L++++
Sbjct: 166 VKNPAELERKINMIPGVVENGLFVNVAHTVLVGTKDGEETSVVTFADFVQTLRNSE 221


>tr|Q31QQ3|Q31QQ3_SYNE7 Ribose-5-phosphate isomerase
OS=Synechococcus elongatus (strain PCC 7942)
GN=Synpcc7942_0584 PE=4 SV=1
Length = 241

Score = 54.3 bits (129), Expect = 3e-06
Identities = 26/44 (59%), Positives = 32/44 (72%)
Frame = +2

Query: 5 IKDPSALEKEINMIPGVVENGLFIGVANSVLVGTQDGDDIQVVE 136
I P+ LEK IN IPGV+ENGLF+G+ + VLVG DGD + V E
Sbjct: 197 IDQPAELEKAINNIPGVLENGLFVGLTDLVLVGEVDGDRVSVRE 240


>tr|B4W0N0|B4W0N0_9CYAN Ribose 5-phosphate isomerase A
OS=Microcoleus chthonoplastes PCC 7420 GN=MC7420_963
PE=4 SV=1
Length = 236

Score = 51.6 bits (122), Expect = 2e-05
Identities = 26/42 (61%), Positives = 32/42 (76%), Gaps = 1/42 (2%)
Frame = +2

Query: 2 AIKDPSALEKEINMIPGVVENGLFIGVANSVLVG-TQDGDDI 124
+I +P LEK IN IPGV+ENGLF+GVAN VLVG +DG +
Sbjct: 191 SIDNPGELEKTINNIPGVLENGLFVGVANVVLVGEVKDGQPL 232


>tr|Q05WE3|Q05WE3_9SYNE Ribose 5-phosphate isomerase
OS=Synechococcus sp. RS9916 GN=RS9916_34842 PE=4 SV=1
Length = 237

Score = 51.2 bits (121), Expect = 3e-05
Identities = 24/38 (63%), Positives = 30/38 (78%)
Frame = +2

Query: 5 IKDPSALEKEINMIPGVVENGLFIGVANSVLVGTQDGD 118
I DP+ALE IN IPGV+ENGLF+ +A+ VLVG +GD
Sbjct: 189 IADPAALELAINNIPGVLENGLFVNLADEVLVGEVNGD 226


>tr|B5ILX5|B5ILX5_9CHRO Ribose 5-phosphate isomerase A OS=Cyanobium
sp. PCC 7001 GN=rpiA PE=4 SV=1
Length = 237

Score = 51.2 bits (121), Expect = 3e-05
Identities = 24/46 (52%), Positives = 34/46 (73%)
Frame = +2

Query: 5 IKDPSALEKEINMIPGVVENGLFIGVANSVLVGTQDGDDIQVVELA 142
I DP ALE++IN +PGV+ENGLF+ + + VLVG + D +V +LA
Sbjct: 190 ITDPVALEQQINNLPGVLENGLFVNLTDQVLVGEIEADQPRVRDLA 235


>tr|B7KIR2|B7KIR2_9CHRO Ribose 5-phosphate isomerase OS=Cyanothece
sp. PCC 7424 GN=PCC7424_1014 PE=4 SV=1
Length = 237

Score = 50.8 bits (120), Expect = 4e-05
Identities = 23/33 (69%), Positives = 29/33 (87%)
Frame = +2

Query: 5 IKDPSALEKEINMIPGVVENGLFIGVANSVLVG 103
I+DP+ LEK IN IPGV+ENGLF+GVA+ +LVG
Sbjct: 192 IEDPANLEKTINNIPGVLENGLFVGVADLILVG 224


>tr|B1DLL6|B1DLL6_9BACL Ribose-5-phosphate isomerase
OS=Paenibacillus sp. JDR-2 GN=Pjdr2DRAFT_6017 PE=4 SV=1
Length = 108

Score = 50.4 bits (119), Expect = 5e-05
Identities = 23/38 (60%), Positives = 30/38 (78%)
Frame = +2

Query: 2 AIKDPSALEKEINMIPGVVENGLFIGVANSVLVGTQDG 115
AI DP AL ++N IPGVV+NGLFI +A+ V+VG+ DG
Sbjct: 63 AIADPEALHDDLNRIPGVVDNGLFIHMASLVIVGSADG 100


>tr|B1XL11|B1XL11_SYNP2 Ribose 5-phosphate isomerase A
OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 /
PR-6) GN=rpiA PE=4 SV=1
Length = 233

Score = 50.1 bits (118), Expect = 6e-05
Identities = 22/33 (66%), Positives = 29/33 (87%)
Frame = +2

Query: 5 IKDPSALEKEINMIPGVVENGLFIGVANSVLVG 103
I DP+ LE++IN IPGV+ENGLF+GVA+ +LVG
Sbjct: 188 IDDPATLEQKINNIPGVLENGLFVGVADVILVG 220