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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919867
Clone id YMU001_000130_B01
Library
Length 505
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000130_B01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTGGAACTCGAACAAGTCTTCTGGGTAAATCCACAATTGATGATGTAGTCTGCTGCCATT
CAGGGCAGTGGTTTCATGGTGCTGACAGGATTTTTTTGTCAAAGATATGTTATGAAACTG
CCATTGTCGGTAACACAGCAATGGTGGTTCTCGCTAGGTAATGAGGGCCATTTTGACCTT
TGTGGTTTTTGCTGGTGGCTTGGCTTATTCCTATATGCACATGGTCTATGACGGTCCATG
AAATGTGGATGGGCTGAATGCCTTTAGAATCTGAGAATCTCAGAATCTTTTGTCGTCTGT
AGGCTAATCTCTTGAGCCCCTCTGCGTTAAACAGCTGTTAAGCCCTATACGCAACCTGTG
GCGCACACTTGACAACCCAATACCTACAATTTGATACAAAAACACATCATTTATTTGTCG
TGACAGTGGAGTTTTCGTACGGTTGTACCTTTTTTGCCCCCTGATGAGTCTCTTATTGCC
AATGGGCTGATGTTTCACATTTAAA
■■Homology search results ■■ -
sp_hit_id P23579
Definition sp|P23579|RPOB_EUGGR DNA-directed RNA polymerase subunit beta OS=Euglena gracilis
Align length 62
Score (bit) 30.0
E-value 6.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919867|Adiantum capillus-veneris mRNA, clone:
YMU001_000130_B01.
         (505 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P23579|RPOB_EUGGR DNA-directed RNA polymerase subunit beta OS...    30   6.5  
sp|P76226|YNJF_ECOLI Inner membrane protein ynjF OS=Escherichia ...    30   8.3  
sp|Q7G794|LOX3_ORYSJ Putative lipoxygenase 3 OS=Oryza sativa sub...    30   8.4  

>sp|P23579|RPOB_EUGGR DNA-directed RNA polymerase subunit beta
           OS=Euglena gracilis GN=rpoB PE=3 SV=1
          Length = 1082

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = -1

Query: 424 VTTNK*CVFVSNCRYWVVKCAPQVAYRA*QLFNAEGLKRLAYRRQKILRFSDSKGIQPIH 245
           + TNK   F+S+ +      AP   +R+ Q    +  K L  +R KI  +S SK I  I 
Sbjct: 453 IETNKGIYFISSAQEKYFTVAPFDVFRSSQSNLLDKNKLLGVKRSKIFSYSFSKNIDFIS 512

Query: 244 IS 239
           IS
Sbjct: 513 IS 514


>sp|P76226|YNJF_ECOLI Inner membrane protein ynjF OS=Escherichia
           coli (strain K12) GN=ynjF PE=1 SV=2
          Length = 206

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 177 PLWFLLVAWLIPICTWSMTVHEMWMG*MPLES 272
           P WF   AW+     W  T   +W G + L+S
Sbjct: 171 PAWFAWFAWIFGALCWMTTFTRVWSGYLTLKS 202


>sp|Q7G794|LOX3_ORYSJ Putative lipoxygenase 3 OS=Oryza sativa subsp.
           japonica GN=Os03g0700400 PE=3 SV=1
          Length = 866

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 136 QQWWFSLGNEGHFDLCGFCWW 198
           Q WW  +   GH DL G  WW
Sbjct: 668 QAWWAEVREVGHGDLKGAAWW 688
tr_hit_id Q5PSM0
Definition tr|Q5PSM0|Q5PSM0_WHEAT Cytokinin oxidase (Fragment) OS=Triticum aestivum
Align length 38
Score (bit) 34.7
E-value 2.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919867|Adiantum capillus-veneris mRNA, clone:
YMU001_000130_B01.
         (505 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5PSM0|Q5PSM0_WHEAT Cytokinin oxidase (Fragment) OS=Triticum ...    35   2.7  
tr|B1G670|B1G670_9BURK Amidase OS=Burkholderia graminis C4D1M GN...    34   3.5  
tr|B2JQX4|B2JQX4_BURP8 Amidase OS=Burkholderia phymatum (strain ...    33   7.8  

>tr|Q5PSM0|Q5PSM0_WHEAT Cytokinin oxidase (Fragment) OS=Triticum
           aestivum PE=4 SV=1
          Length = 85

 Score = 34.7 bits (78), Expect = 2.7
 Identities = 21/38 (55%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = -1

Query: 364 APQVAYRA*QLFN--AEGLKRLAYRRQKILRFSDSKGI 257
           A +V Y   QLF+  A+ LKRL  R QKILRF D  GI
Sbjct: 11  AEEVFYAVSQLFSSVADDLKRLEARNQKILRFRDLAGI 48


>tr|B1G670|B1G670_9BURK Amidase OS=Burkholderia graminis C4D1M
           GN=BgramDRAFT_4772 PE=4 SV=1
          Length = 405

 Score = 34.3 bits (77), Expect = 3.5
 Identities = 20/60 (33%), Positives = 32/60 (53%)
 Frame = -1

Query: 382 YWVVKCAPQVAYRA*QLFNAEGLKRLAYRRQKILRFSDSKGIQPIHISWTVIDHVHIGIS 203
           YW+V   P VA RA    +A+ L  +  R Q++L  +   G+  + + WT  D V +G+S
Sbjct: 321 YWLVPTVPGVAPRADA--SAQTLDHVRARSQQMLCAAGLAGLPQVSMPWTRFDGVPVGLS 378


>tr|B2JQX4|B2JQX4_BURP8 Amidase OS=Burkholderia phymatum (strain DSM
           17167 / STM815) GN=Bphy_4553 PE=4 SV=1
          Length = 400

 Score = 33.1 bits (74), Expect = 7.8
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = -1

Query: 382 YWVVKCAPQVAYRA*QLFNAEGLKRLAYRRQKILRFSDSKGIQPIHISWTVIDHVHIGIS 203
           YW+V   P VA RA    +AE +     R Q++L  +   G+  + + WT I+   +G+S
Sbjct: 320 YWIVPTVPGVAPRADA--SAETVDHTRARSQQMLCVAGLAGLPQVSMPWTRIEGAPVGLS 377