NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919869
Clone id YMU001_000130_B03
Library
Length 480
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000130_B03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTTTGAGTACCTGTTGTTGAATAGCTTTGTGACATAAAATTCATTGTGAAACTCCTTTAG
CTAGCTTTGGCTGCTGCCACAAACGTCCATAATTCAAGAAGTAGCCATAAGCCTTCTTTC
AAATCTTCTTGAACTCTACATCACTTCAATAATCTTGGTTCTCAAGTGTACCAAGATAGC
GACCAATAATTGGCCACTCACCATCATACATAGACTCAGTAAATGCTTCAAACACTTGAG
CAATAGAACCTCAATTAGCATGAATGAGATGATGTATAGAAATTCAAACCCACATCATCA
CTCGTTGTTAGCATCTCCTCGTCATCTTCATACCTAGCTCGAGACAACATGTCAACAACT
GGATTATCTCTCCGGTAATGTGATGAATTTCATGGTTAAGTGTTTTAGTAAAAGCAATCC
ATGGAAGCATAGCAATATTTGCTATAGAACAAAGAGCAATCATGCCCAACACTGGCAAAC
■■Homology search results ■■ -
sp_hit_id Q9N2V9
Definition sp|Q9N2V9|PDE6_CAEEL Probable 3',5'-cyclic phosphodiesterase pde-6 OS=Caenorhabditis elegans
Align length 89
Score (bit) 30.4
E-value 4.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919869|Adiantum capillus-veneris mRNA, clone:
YMU001_000130_B03.
         (480 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9N2V9|PDE6_CAEEL Probable 3',5'-cyclic phosphodiesterase pde...    30   4.3  
sp|Q09708|YAGG_SCHPO Uncharacterized protein C12G12.16c OS=Schiz...    30   5.6  
sp|A7TMC5|ATG23_VANPO Autophagy-related protein 23 OS=Vanderwalt...    29   9.6  

>sp|Q9N2V9|PDE6_CAEEL Probable 3',5'-cyclic phosphodiesterase pde-6
           OS=Caenorhabditis elegans GN=pde-6 PE=2 SV=1
          Length = 760

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
 Frame = +2

Query: 197 LTIIHRLS-KCFKHLSNRTSISMN----EMMYRNSNPHHHSLLASPRHLHT*LETTCQQL 361
           LT+ H  +   F  LS    I M     EM+       H   LA    +H   +   +Q 
Sbjct: 582 LTLQHNANVNIFSSLSREEFIQMRHAMVEMVLATDISRHFEYLAKFNKMHV-TDVPEEQR 640

Query: 362 DYLSGNVMNFMVKCFSKSNPWKHSNICYR 448
           D  S  + + +VKC   SNP +   +C R
Sbjct: 641 DTNSLTICDMLVKCADISNPAREWGLCQR 669


>sp|Q09708|YAGG_SCHPO Uncharacterized protein C12G12.16c
           OS=Schizosaccharomyces pombe GN=SPAC12G12.16c PE=2 SV=1
          Length = 496

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +2

Query: 137 YITSIILVLKC-TKIATNNWPLTIIHRLSKCFKHLSNRTSISMNEMMYRNSNPHHHSLLA 313
           YI   +   K  T + +NN   + IH + K F HLS+ T + + + + R  N     L A
Sbjct: 417 YIKKFLTAKKLFTDLPSNNELFSFIHNIPKEFLHLSDSTYLDLEKQVLRIFNVQIEELDA 476

Query: 314 -SPRHLHT*LE 343
            +P + H  LE
Sbjct: 477 KTPWYYHYELE 487


>sp|A7TMC5|ATG23_VANPO Autophagy-related protein 23
           OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM
           70294) GN=ATG23 PE=3 SV=1
          Length = 491

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
 Frame = +2

Query: 89  IIQEVAISLLSNLLELYITSIILVLKCTKIATNNWPLT--IIHRLSKCFKHLSNRTSISM 262
           II    I LL NL+E      +LV    ++  N  P+   I   +SK   + +N T+I+ 
Sbjct: 368 IIDSTDIQLLRNLIEN--EKKVLVQATNELKLNLTPVNSKINDSISKSINN-NNNTNITT 424

Query: 263 NEMMYRNSNPHHHSLLAS 316
           N  +  N+N + +SLL S
Sbjct: 425 NTSINNNNNTNENSLLDS 442
tr_hit_id A9SEB1
Definition tr|A9SEB1|A9SEB1_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 35
Score (bit) 42.4
E-value 0.012
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919869|Adiantum capillus-veneris mRNA, clone:
YMU001_000130_B03.
         (480 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SEB1|A9SEB1_PHYPA Predicted protein (Fragment) OS=Physcomit...    42   0.012
tr|B6AFA4|B6AFA4_9CRYT HEAT repeat family protein OS=Cryptospori...    35   2.4  
tr|B8LUE4|B8LUE4_9EURO Putative uncharacterized protein OS=Talar...    34   3.2  
tr|B6N423|B6N423_BRAFL Putative uncharacterized protein OS=Branc...    34   4.1  
tr|B6N407|B6N407_BRAFL Putative uncharacterized protein OS=Branc...    34   4.1  
tr|B3S0A7|B3S0A7_TRIAD Putative uncharacterized protein OS=Trich...    33   7.0  

>tr|A9SEB1|A9SEB1_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_46806 PE=4 SV=1
          Length = 75

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 20/35 (57%), Positives = 25/35 (71%)
 Frame = -3

Query: 478 LPVLGMIALCSIANIAMLPWIAFTKTLNHEIHHIT 374
           LP+LGMI   S  +IAML WIA+ K+LN E  H+T
Sbjct: 30  LPLLGMITNWSTPDIAMLRWIAYIKSLNLEFKHVT 64


>tr|B6AFA4|B6AFA4_9CRYT HEAT repeat family protein
           OS=Cryptosporidium muris RN66 GN=CMU_032800 PE=4 SV=1
          Length = 2752

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
 Frame = +2

Query: 104 AISLLSNLLEL-YITSIILVLKCTKIATNNWPLTIIHRLSKCFKHLSNRTSISMNEMM 274
           +I   + L+EL ++  I   L  T++ +NNW  T I  L    ++LSN TSIS+N+++
Sbjct: 588 SIDRYNRLIELDFLLDIANYLDSTQLNSNNWRCTYI--LKCMIEYLSNSTSISLNKLI 643


>tr|B8LUE4|B8LUE4_9EURO Putative uncharacterized protein
           OS=Talaromyces stipitatus ATCC 10500 GN=TSTA_071200 PE=4
           SV=1
          Length = 351

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 26/94 (27%), Positives = 38/94 (40%)
 Frame = +2

Query: 143 TSIILVLKCTKIATNNWPLTIIHRLSKCFKHLSNRTSISMNEMMYRNSNPHHHSLLASPR 322
           T IIL+  C  +   NW    I   S    H  N+    + EM+ R  +    S L SP 
Sbjct: 94  TQIILLFDCEHVTACNWRKRFIS--SSVQDHSINKDMSGLEEMLQRERS-LLASFLCSPL 150

Query: 323 HLHT*LETTCQQLDYLSGNVMNFMVKCFSKSNPW 424
           H HT   T  Q   ++   +++   +   KS  W
Sbjct: 151 HRHTKSPTLWQHRLWILTKLLDLQEQAAVKSEIW 184


>tr|B6N423|B6N423_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_125867 PE=4 SV=1
          Length = 1346

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
 Frame = +2

Query: 89  IIQEVAISLLSNLLELY--ITSIILVLKCTKIATNNWPLTIIHRLSKCFKHLSNRTSISM 262
           +++ V + L   +LE Y  I S+I  L C+ ++ N W   +++ L + FK ++      M
Sbjct: 634 VLKVVGLVLRQQVLEFYEEILSLIYSLTCSSVSQNMWQ--VLYLLYENFKEVAFDYFTEM 691

Query: 263 NEMMYRNSNPHHHSLLASPRHL 328
              ++        + L+SP+HL
Sbjct: 692 MPCLHNYITVDTQAFLSSPKHL 713


>tr|B6N407|B6N407_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_125858 PE=4 SV=1
          Length = 980

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
 Frame = +2

Query: 89  IIQEVAISLLSNLLELY--ITSIILVLKCTKIATNNWPLTIIHRLSKCFKHLSNRTSISM 262
           +++ V + L   +LE Y  I S+I  L C+ ++ N W   +++ L + FK ++      M
Sbjct: 571 VLKVVGLVLRQQVLEFYEEILSLIYSLTCSSVSQNMWQ--VLYLLYENFKEVAFDYFTEM 628

Query: 263 NEMMYRNSNPHHHSLLASPRHL 328
              ++        + L+SP+HL
Sbjct: 629 MPCLHNYITVDTQAFLSSPKHL 650


>tr|B3S0A7|B3S0A7_TRIAD Putative uncharacterized protein
           OS=Trichoplax adhaerens GN=TRIADDRAFT_57745 PE=4 SV=1
          Length = 441

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 35/119 (29%), Positives = 52/119 (43%), Gaps = 3/119 (2%)
 Frame = +2

Query: 113 LLSNLLELYITSIILVLKCTK---IATNNWPLTIIHRLSKCFKHLSNRTSISMNEMMYRN 283
           L S+   LY T   L    T+   I+ N+  LT ++ L      L N++++SMN    RN
Sbjct: 67  LSSSFRSLYKTVFSLDNSITENGTISGNDQVLTAVNNLGSS---LDNQSTVSMNSYDSRN 123

Query: 284 SNPHHHSLLASPRHLHT*LETTCQQLDYLSGNVMNFMVKCFSKSNPWKHSNICYRTKSN 460
           S+      LASP+H H       QQ      N M+   +  S  +P+   N     KS+
Sbjct: 124 SS------LASPQHHHQQHHHHQQQQQQQQRNPMSLHQQSSSIESPFIEPNGSINLKSS 176