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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919872
Clone id YMU001_000130_B06
Library
Length 364
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000130_B06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AAGTTTATAACCAATATTTTGCCCTATAAGAGGGAGCAATAGAGACATCGTTTTGGATGA
AATGAGCCAGCGCCAGAGATCAGCCCATCGTTTCGCAGATCAGCCCCTTGGTGTTTTGGA
CCTTCATTGCGAGCATCCGCACCGGATCAGCCATAGCAGCCAGAGTTTTCAATTTTCAGC
CCTTTCCCTCGCCGGAAGAGCCATGAATCTGCAAATGCTAGTCTCTCTGCTGTTGAATCA
ACCTTTCGGCAGGACATCAAATCTCTCTCCCGGCCATTTCCTCACCACATCGCTGCCCAT
CATCAGCTGTGTTTTAAGCCCTGGTTCCCGCAACAGATCTGCTGCATTTTGTGCACCAGA
TCTG
■■Homology search results ■■ -
sp_hit_id Q90XD2
Definition sp|Q90XD2|SPEB_CHICK Agmatinase, mitochondrial OS=Gallus gallus
Align length 54
Score (bit) 30.4
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919872|Adiantum capillus-veneris mRNA, clone:
YMU001_000130_B06.
         (364 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q90XD2|SPEB_CHICK Agmatinase, mitochondrial OS=Gallus gallus ...    30   2.9  
sp|Q09830|YAD4_SCHPO TBC domain-containing protein C4G8.04 OS=Sc...    30   3.8  
sp|O34504|YCEB_BACSU Uncharacterized protein yceB OS=Bacillus su...    30   3.8  
sp|Q96SQ7|ATOH8_HUMAN Protein atonal homolog 8 OS=Homo sapiens G...    29   6.4  
sp|Q9LZJ6|ATL3L_ARATH RING-H2 finger protein ATL3L OS=Arabidopsi...    29   8.4  

>sp|Q90XD2|SPEB_CHICK Agmatinase, mitochondrial OS=Gallus gallus
           GN=AGMAT PE=2 SV=1
          Length = 340

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = -2

Query: 336 LLREPGLKTQLMMGSDVVRKWPGERFDVLPKG*FNSRETSICRFMALPARERAE 175
           LLR   L  +L+  S         RF+V P   F +R   +C  + LP +  AE
Sbjct: 4   LLRTARLSARLLFASAAAPCRRASRFNVPPSAEFVARPVGVCSMLRLPVQTSAE 57


>sp|Q09830|YAD4_SCHPO TBC domain-containing protein C4G8.04
           OS=Schizosaccharomyces pombe GN=SPAC4G8.04 PE=1 SV=1
          Length = 772

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +1

Query: 61  NEPAPEISPSFRRSAPWCFGPSLRASAPDQP*QPEFSIFSPFPRR-KSHESANASLSAVE 237
           ++P+   S  F RS+P C  PS+ ++      +PE   +S   +   S+++  +SLS + 
Sbjct: 266 HDPSLLSSSKFFRSSPRCSTPSVSSTFVSATSEPEVETYSVSTKNSSSNKNLRSSLSKLL 325

Query: 238 STFRQDIKSLS 270
           ST   + K LS
Sbjct: 326 STSNLNNKPLS 336


>sp|O34504|YCEB_BACSU Uncharacterized protein yceB OS=Bacillus
           subtilis GN=yceB PE=4 SV=1
          Length = 313

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 251 CRKVDSTAERLAFA-DSWLFRRGKGL 177
           C K D  AE LA + D WL R GKGL
Sbjct: 210 CAKTDEEAEELALSQDLWLLRVGKGL 235


>sp|Q96SQ7|ATOH8_HUMAN Protein atonal homolog 8 OS=Homo sapiens
           GN=ATOH8 PE=2 SV=2
          Length = 321

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
 Frame = +1

Query: 64  EPAPEISPSFRRSAPWCFGPSLRA-SAPDQP*QPEFSIFSPFPRRKSHESANASLSAVES 240
           E  P   P  R     C  P+  A SAP  P  P  S   P P  +  ES+ +S+S V  
Sbjct: 141 EAQPFREPGLRPRILLCAPPARPAPSAPPAPPAPPESTVRPAPPTRPGESSYSSISHVIY 200

Query: 241 TFRQDIKSLSRPFPHHIAA 297
              QD  +  R  P    A
Sbjct: 201 NNHQDSSASPRKRPGEATA 219


>sp|Q9LZJ6|ATL3L_ARATH RING-H2 finger protein ATL3L OS=Arabidopsis
           thaliana GN=ATL3L PE=2 SV=1
          Length = 257

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = +1

Query: 196 KSHESANASLSAVESTFRQDIKSLSRPFPHHIAAHHQLCFKPWFPQQICCILC 354
           K+HES     S   S F +D +    P   H+   H  C   WF  +  C LC
Sbjct: 104 KTHESPLEECSVCLSEFEEDDEGRVLPKCGHV--FHVDCIDTWFRSRSSCPLC 154
tr_hit_id B6KUN2
Definition tr|B6KUN2|B6KUN2_TOXGO Ribosomal protein L15, putative OS=Toxoplasma gondii ME49
Align length 79
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919872|Adiantum capillus-veneris mRNA, clone:
YMU001_000130_B06.
         (364 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6KUN2|B6KUN2_TOXGO Ribosomal protein L15, putative OS=Toxopl...    35   1.9  
tr|A1S305|A1S305_SHEAM Putative uncharacterized protein OS=Shewa...    33   5.5  
tr|B3MYT0|B3MYT0_DROAN GF22205 OS=Drosophila ananassae GN=GF2220...    33   5.5  
tr|B8B535|B8B535_ORYSI Putative uncharacterized protein OS=Oryza...    33   7.1  
tr|B7ZZ59|B7ZZ59_MAIZE Putative uncharacterized protein OS=Zea m...    33   7.1  
tr|B4FRT4|B4FRT4_MAIZE Putative uncharacterized protein OS=Zea m...    33   7.1  
tr|B6P9K7|B6P9K7_BRAFL Putative uncharacterized protein OS=Branc...    33   7.1  

>tr|B6KUN2|B6KUN2_TOXGO Ribosomal protein L15, putative
           OS=Toxoplasma gondii ME49 GN=TGME49_020300 PE=4 SV=1
          Length = 1361

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 29/79 (36%), Positives = 40/79 (50%)
 Frame = +1

Query: 61  NEPAPEISPSFRRSAPWCFGPSLRASAPDQP*QPEFSIFSPFPRRKSHESANASLSAVES 240
           + P+P  SPS   S+P    PS  +S+P  P  P  S  SP P   S  S ++S SAV S
Sbjct: 196 SSPSPSSSPSSFPSSPSPSSPSPSSSSPS-PSSPSPSSSSPSPSSSSPSSPSSSSSAVPS 254

Query: 241 TFRQDIKSLSRPFPHHIAA 297
            F      L+ P  H+++A
Sbjct: 255 -FDYFFHPLTSP-KHYLSA 271


>tr|A1S305|A1S305_SHEAM Putative uncharacterized protein
           OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
           GN=Sama_0551 PE=3 SV=1
          Length = 257

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = -1

Query: 121 VQNTKGLICETMG*SLALAHFIQNDVSIAPSYRAKYWL 8
           + +  GL  E +   L  AHF  N+V +AP+YRA+ WL
Sbjct: 46  IDSQHGLQYELLEAILQHAHFRLNEVKLAPNYRARRWL 83


>tr|B3MYT0|B3MYT0_DROAN GF22205 OS=Drosophila ananassae GN=GF22205
           PE=4 SV=1
          Length = 3474

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +2

Query: 38  NRDIVLDEMSQRQRSAHRFADQPLGVLDLHCEHPHRISH 154
           N D + +E+ Q     HR  D+ L   DLH  HPH  SH
Sbjct: 803 NMDYIFNELKQ----THRQLDEDLRACDLHQNHPHHHSH 837


>tr|B8B535|B8B535_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_27055 PE=4 SV=1
          Length = 591

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +1

Query: 118 GPSLRASA--PDQP*QPEFSIFSPFPRRKSHESANASLSAVESTFRQDIKSLSRPFPHHI 291
           GP+  A+A  P  P QP+F  + P P   S   ++ + S+V ST  +    L RPFP   
Sbjct: 34  GPAAAAAAAKPGTPKQPKFPFYLPSPLPASSYKSSPANSSVASTPARG--GLKRPFPPPS 91

Query: 292 AAHH 303
            A H
Sbjct: 92  PAKH 95


>tr|B7ZZ59|B7ZZ59_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 213

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = +1

Query: 64  EPAPEISPSFRRSAPWCFGPSLRASAPDQP*QPEFSIFSPFP-RRKSHESANASLSAVES 240
           EPA     S    A    G      AP  P QP+FS + P P +  S++ + A+ SA  +
Sbjct: 13  EPAVAEDNSVADGAAAGCGDGPPVKAPRTPKQPKFSFYLPSPLQPSSYKGSPANSSAAST 72

Query: 241 TFRQDIKSLSRPFPHHIAAHH 303
             R   K   RPFP    A H
Sbjct: 73  PARGGFK---RPFPPPSPAKH 90


>tr|B4FRT4|B4FRT4_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 586

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = +1

Query: 64  EPAPEISPSFRRSAPWCFGPSLRASAPDQP*QPEFSIFSPFP-RRKSHESANASLSAVES 240
           EPA     S    A    G      AP  P QP+FS + P P +  S++ + A+ SA  +
Sbjct: 13  EPAVAEDNSVADGAAAGCGDGPPVKAPRTPKQPKFSFYLPSPLQPSSYKGSPANSSAAST 72

Query: 241 TFRQDIKSLSRPFPHHIAAHH 303
             R   K   RPFP    A H
Sbjct: 73  PARGGFK---RPFPPPSPAKH 90


>tr|B6P9K7|B6P9K7_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_104357 PE=4 SV=1
          Length = 162

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 24/79 (30%), Positives = 30/79 (37%)
 Frame = +1

Query: 67  PAPEISPSFRRSAPWCFGPSLRASAPDQP*QPEFSIFSPFPRRKSHESANASLSAVESTF 246
           P P + PS R S   C  PS+R S              PF R   H S + S   +  + 
Sbjct: 4   PPPFLHPSIRPSVRPCIHPSVRPS------------IHPFIRPSIHLSVHPS---IHPSI 48

Query: 247 RQDIKSLSRPFPHHIAAHH 303
              I+   RP  HH   HH
Sbjct: 49  HPSIRPSVRPSIHHSLIHH 67