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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919876
Clone id YMU001_000130_B11
Library
Length 550
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000130_B11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTAAAGGCACAACGCCTTTACCCCAACAACCTCCCACTTAAATGGGAATGTGTTGATAAT
TGGTACTACTATAGGATCTAGTAGTATGTACAGTAGGTAAGGAGGAAGCTCGTCTCAACC
TATGCCCATTGGCTCTCTCAAAGCCAATGCATGCCCTCATGTAGACTTTAGCGGTGTGCG
AAAGCGTATATCTCTACTAGAATCAACATGCATATCCTGTAGGTATTCTGTAATGACCTG
CACTGCTCCATGATGCATCATGCTAGTGTGAGTCATAGCACGACTAACAAGCCCAACTAC
AAACGCTCTGATTGCAGTTGCTATGTTGGGTCTCAACACTAAGAGGTCATACATTAGAGT
TCCAAAGACTGATGACAAACGCGTAATCTCTGCCAGCATATCCATGCCAATTGCATCAAC
GCCATGAGTAGTGACCTCTGCCAGTCTATCTGTAGTAGGTATCTCAACCCTCACTGGATC
ACCACCAGAACTAGTCACATATGAACGCGTCAATCCTGACTCCAAGGTAGTTGTCACTCC
CTCATCATCC
■■Homology search results ■■ -
sp_hit_id P10978
Definition sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum
Align length 53
Score (bit) 35.8
E-value 0.14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919876|Adiantum capillus-veneris mRNA, clone:
YMU001_000130_B11.
         (550 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra...    36   0.14 
sp|Q5VTH9|WDR78_HUMAN WD repeat-containing protein 78 OS=Homo sa...    32   2.7  
sp|Q87A29|RL1_XYLFT 50S ribosomal protein L1 OS=Xylella fastidio...    32   2.7  
sp|Q9PA83|RL1_XYLFA 50S ribosomal protein L1 OS=Xylella fastidio...    32   2.7  
sp|Q2RVF5|RUVB_RHORT Holliday junction ATP-dependent DNA helicas...    31   3.5  
sp|Q9CK86|RL1_PASMU 50S ribosomal protein L1 OS=Pasteurella mult...    31   3.5  
sp|Q9SRH4|PEL7_ARATH Probable pectate lyase 7 OS=Arabidopsis tha...    31   3.5  
sp|A1TYI7|RL1_MARAV 50S ribosomal protein L1 OS=Marinobacter aqu...    31   4.6  
sp|A6T3L6|RL1_JANMA 50S ribosomal protein L1 OS=Janthinobacteriu...    31   4.6  
sp|Q6R2J8|SRF8_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Ara...    30   6.0  
sp|Q11DH7|RUVB_MESSB Holliday junction ATP-dependent DNA helicas...    30   7.8  
sp|Q5GWS3|RL1_XANOR 50S ribosomal protein L1 OS=Xanthomonas oryz...    30   7.8  
sp|Q2NZX5|RL1_XANOM 50S ribosomal protein L1 OS=Xanthomonas oryz...    30   7.8  
sp|Q6C3S1|NDE1_YARLI Nuclear distribution protein nudE homolog 1...    30   7.8  

>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from
            transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
          Length = 1328

 Score = 35.8 bits (81), Expect = 0.14
 Identities = 22/53 (41%), Positives = 31/53 (58%)
 Frame = -2

Query: 375  SSVFGTLMYDLLVLRPNIATAIRAFVVGLVSRAMTHTSMMHHGAVQVITEYLQ 217
            SS  G+LMY ++  RP+IA A     VG+VSR + +    H  AV+ I  YL+
Sbjct: 1112 SSAVGSLMYAMVCTRPDIAHA-----VGVVSRFLENPGKEHWEAVKWILRYLR 1159


>sp|Q5VTH9|WDR78_HUMAN WD repeat-containing protein 78 OS=Homo
           sapiens GN=WDR78 PE=2 SV=1
          Length = 848

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 24/80 (30%), Positives = 39/80 (48%)
 Frame = +2

Query: 287 TSPTTNALIAVAMLGLNTKRSYIRVPKTDDKRVISASISMPIASTP*VVTSASLSVVGIS 466
           T+P   A + V+  G + ++++     T  K+ IS   +M   S     T A+ S + +S
Sbjct: 34  TTPQLVATMPVSPAGSHKQQNFGLNNATQPKKSISFFATMKATSVK-GYTGANQSRMAVS 92

Query: 467 TLTGSPPELVTYERVNPDSK 526
                PPEL T E+ NP+ K
Sbjct: 93  KTVLIPPELKTVEKPNPNIK 112


>sp|Q87A29|RL1_XYLFT 50S ribosomal protein L1 OS=Xylella fastidiosa
           (strain Temecula1 / ATCC 700964) GN=rplA PE=3 SV=1
          Length = 232

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 24/83 (28%), Positives = 42/83 (50%)
 Frame = -2

Query: 474 VRVEIPTTDRLAEVTTHGVDAIGMDMLAEITRLSSVFGTLMYDLLVLRPNIATAIRAFVV 295
           V V +P+  +  +    G DA+GMD LAE  +     G L YD+++  P+   A+R  VV
Sbjct: 74  VAVFVPSGAKAEDALAAGADAVGMDDLAEKMQA----GDLNYDVVIATPD---AMR--VV 124

Query: 294 GLVSRAMTHTSMMHHGAVQVITE 226
           G +   +    +M +  V  +++
Sbjct: 125 GKLGTLLGPRGLMPNPKVGTVSQ 147


>sp|Q9PA83|RL1_XYLFA 50S ribosomal protein L1 OS=Xylella fastidiosa
           GN=rplA PE=3 SV=1
          Length = 232

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 24/83 (28%), Positives = 42/83 (50%)
 Frame = -2

Query: 474 VRVEIPTTDRLAEVTTHGVDAIGMDMLAEITRLSSVFGTLMYDLLVLRPNIATAIRAFVV 295
           V V +P+  +  +    G DA+GMD LAE  +     G L YD+++  P+   A+R  VV
Sbjct: 74  VAVFVPSGAKAEDALAAGADAVGMDDLAEKMQA----GDLNYDVVIATPD---AMR--VV 124

Query: 294 GLVSRAMTHTSMMHHGAVQVITE 226
           G +   +    +M +  V  +++
Sbjct: 125 GKLGTLLGPRGLMPNPKVGTVSQ 147


>sp|Q2RVF5|RUVB_RHORT Holliday junction ATP-dependent DNA helicase
           ruvB OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB
           8255) GN=ruvB PE=3 SV=1
          Length = 350

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -2

Query: 537 VTTTLESGLTRSYVTSSGGDPVRVEIPTTDRLAEVTTHGVDAIGMDMLAEITR 379
           V  T  SGL  + +    G P+R++   TD L ++ T G   +GM +  E  R
Sbjct: 160 VGATTRSGLLTTPLRDRFGIPLRLDFYETDELVQIVTRGSRLLGMALTDEGAR 212


>sp|Q9CK86|RL1_PASMU 50S ribosomal protein L1 OS=Pasteurella
           multocida GN=rplA PE=3 SV=1
          Length = 229

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
 Frame = -2

Query: 483 GDPVRVEIPTTDRLAEVTTH-GVDAIGMDMLAEITRLSSVFGTLMYDLLVLRPNIATAIR 307
           G  VRV + T    AE     G D +GM+ LAE+ +     G + +D+++  P+   A+R
Sbjct: 70  GRSVRVAVFTQGANAEAAKEAGADLVGMEDLAELVKK----GEMNFDVVIASPD---AMR 122

Query: 306 AFVVGLVSRAMTHTSMMHHGAVQVITEYLQDMHVDS-SRDIRFR 178
             VVG + + +    +M +  V  +T  + D   ++ S  +R+R
Sbjct: 123 --VVGQLGQILGPRGLMPNPKVGTVTPNVADAVKNAKSGQVRYR 164


>sp|Q9SRH4|PEL7_ARATH Probable pectate lyase 7 OS=Arabidopsis
           thaliana GN=At3g01270 PE=2 SV=1
          Length = 475

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -2

Query: 336 LRPNIATAIRAFVVGLVSRAMTHTSMMHHGAVQVITEYLQDMHVDSSRDI 187
           +R N+A     + V   + A  HT M +H     I ++  + H D+S D+
Sbjct: 22  IRANVADETDEYWVNKANEARKHTLMAYHPDPYEIVDHFHERHYDNSTDV 71


>sp|A1TYI7|RL1_MARAV 50S ribosomal protein L1 OS=Marinobacter
           aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=rplA
           PE=3 SV=1
          Length = 232

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
 Frame = -2

Query: 483 GDPVRVEIPTTDRLAE-VTTHGVDAIGMDMLAEITRLSSVFGTLMYDLLVLRPNIATAIR 307
           G  VRV + T    AE  T  G D +GMD LA+  +     G + +D+++  P+   A+R
Sbjct: 71  GKTVRVAVFTQGANAEKATAAGADVVGMDDLADEVKK----GNMDFDVVIATPD---AMR 123

Query: 306 AFVVGLVSRAMTHTSMMHHGAVQVITEYLQDMHVDS-SRDIRFRT 175
             VVG + + +    +M +  V  +T  ++    ++ +  +R+RT
Sbjct: 124 --VVGQLGQILGPRGLMPNPKVGTVTADVETAVKNAKAGQVRYRT 166


>sp|A6T3L6|RL1_JANMA 50S ribosomal protein L1 OS=Janthinobacterium
           sp. (strain Marseille) GN=rplA PE=3 SV=1
          Length = 231

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
 Frame = -2

Query: 483 GDPVRVEI-PTTDRLAEVTTHGVDAIGMDMLAEITRLSSVFGTLMYDLLVLRPNIATAIR 307
           G  VRV +  T ++  +    G D +GMD LAE  +     G + +D+++  P+      
Sbjct: 70  GKSVRVAVFATGEKAGQAKAAGADIVGMDDLAEQIKA----GNMPFDIVIASPDTMR--- 122

Query: 306 AFVVGLVSRAMTHTSMMHHGAVQVIT 229
             +VG + + +    MM +  V  +T
Sbjct: 123 --IVGTLGQILGPRGMMPNPKVGTVT 146


>sp|Q6R2J8|SRF8_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 8
           OS=Arabidopsis thaliana GN=SRF8 PE=2 SV=1
          Length = 703

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 401 SMPIASTP*VVTSASLSVVGISTLTGSPPELVTYERVNPDSKV 529
           S+P++ TP V      SV  ++ L  SP E VT +RV  +  +
Sbjct: 329 SLPLSGTPEVQEQRVKSVASVADLKSSPAEKVTVDRVMKNGSI 371
tr_hit_id Q5GA69
Definition tr|Q5GA69|Q5GA69_SOLLC Putative polyprotein OS=Solanum lycopersicum
Align length 53
Score (bit) 41.6
E-value 0.028
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919876|Adiantum capillus-veneris mRNA, clone:
YMU001_000130_B11.
         (550 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5GA69|Q5GA69_SOLLC Putative polyprotein OS=Solanum lycopersi...    42   0.028
tr|A5B6M5|A5B6M5_VITVI Putative uncharacterized protein OS=Vitis...    40   0.063
tr|A5C7I9|A5C7I9_VITVI Putative uncharacterized protein OS=Vitis...    40   0.11 
tr|A5B1E7|A5B1E7_VITVI Putative uncharacterized protein OS=Vitis...    40   0.11 
tr|A5BAP9|A5BAP9_VITVI Putative uncharacterized protein OS=Vitis...    39   0.14 
tr|A5APH6|A5APH6_VITVI Putative uncharacterized protein OS=Vitis...    39   0.14 
tr|B8YLY6|B8YLY6_MEDTR Gag-Pol polyprotein OS=Medicago truncatul...    39   0.18 
tr|B8YLY5|B8YLY5_MEDTR Gag-Pol polyprotein OS=Medicago truncatul...    39   0.18 
tr|B8YLY4|B8YLY4_MEDTR Gag-Pol polyprotein OS=Medicago truncatul...    39   0.18 
tr|B8YLY3|B8YLY3_MEDTR Gag-Pol polyprotein OS=Medicago truncatul...    39   0.18 
tr|B8YLY7|B8YLY7_LOTJA Gag-Pol polyprotein OS=Lotus japonicus PE...    39   0.24 
tr|A5BA89|A5BA89_VITVI Putative uncharacterized protein OS=Vitis...    39   0.24 
tr|A5BA77|A5BA77_VITVI Putative uncharacterized protein (Fragmen...    39   0.24 
tr|A5B4P6|A5B4P6_VITVI Putative uncharacterized protein OS=Vitis...    39   0.24 
tr|A5BE52|A5BE52_VITVI Putative uncharacterized protein OS=Vitis...    38   0.31 
tr|A5B4I5|A5B4I5_VITVI Putative uncharacterized protein OS=Vitis...    38   0.31 
tr|A5AGF7|A5AGF7_VITVI Putative uncharacterized protein OS=Vitis...    38   0.31 
tr|A5C844|A5C844_VITVI Putative uncharacterized protein OS=Vitis...    38   0.41 
tr|A5BPU0|A5BPU0_VITVI Putative uncharacterized protein OS=Vitis...    38   0.41 
tr|A5BIC7|A5BIC7_VITVI Putative uncharacterized protein OS=Vitis...    38   0.41 
tr|A5BGX3|A5BGX3_VITVI Putative uncharacterized protein OS=Vitis...    38   0.41 
tr|A5BD56|A5BD56_VITVI Putative uncharacterized protein OS=Vitis...    38   0.41 
tr|A5B7F1|A5B7F1_VITVI Putative uncharacterized protein OS=Vitis...    38   0.41 
tr|A5AL16|A5AL16_VITVI Putative uncharacterized protein OS=Vitis...    38   0.41 
tr|A5AHY1|A5AHY1_VITVI Putative uncharacterized protein OS=Vitis...    38   0.41 
tr|A5AER2|A5AER2_VITVI Putative uncharacterized protein OS=Vitis...    38   0.41 
tr|Q9ZQE4|Q9ZQE4_ARATH Copia-like retroelement pol polyprotein O...    37   0.53 
tr|A5CAX7|A5CAX7_VITVI Putative uncharacterized protein OS=Vitis...    37   0.53 
tr|A5CA02|A5CA02_VITVI Putative uncharacterized protein OS=Vitis...    37   0.53 
tr|A5BYJ3|A5BYJ3_VITVI Putative uncharacterized protein OS=Vitis...    37   0.53 

>tr|Q5GA69|Q5GA69_SOLLC Putative polyprotein OS=Solanum lycopersicum
           PE=4 SV=1
          Length = 687

 Score = 41.6 bits (96), Expect = 0.028
 Identities = 25/53 (47%), Positives = 34/53 (64%)
 Frame = -2

Query: 375 SSVFGTLMYDLLVLRPNIATAIRAFVVGLVSRAMTHTSMMHHGAVQVITEYLQ 217
           SSV G+LMY ++  RP+IA A     VGLVSR + + S +H  AV+ I  YL+
Sbjct: 472 SSVVGSLMYAMVCTRPDIAHA-----VGLVSRYLANPSKVHWEAVKWILRYLR 519


>tr|A5B6M5|A5B6M5_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_035792 PE=4 SV=1
          Length = 1179

 Score = 40.4 bits (93), Expect = 0.063
 Identities = 23/53 (43%), Positives = 32/53 (60%)
 Frame = -2

Query: 375  SSVFGTLMYDLLVLRPNIATAIRAFVVGLVSRAMTHTSMMHHGAVQVITEYLQ 217
            +S  G+LMYD++  RP+IA A     VG+VSR M+     H  AV+ I  YL+
Sbjct: 1036 ASAIGSLMYDMVCTRPDIAHA-----VGVVSRFMSRPGKQHWEAVKWILRYLK 1083


>tr|A5C7I9|A5C7I9_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_005915 PE=4 SV=1
          Length = 406

 Score = 39.7 bits (91), Expect = 0.11
 Identities = 22/59 (37%), Positives = 33/59 (55%)
 Frame = -2

Query: 393 AEITRLSSVFGTLMYDLLVLRPNIATAIRAFVVGLVSRAMTHTSMMHHGAVQVITEYLQ 217
           A+I   SS+ G LMY  +  RP+IA     FVVG++ R +++    H  A + +  YLQ
Sbjct: 203 AQIILYSSLVGXLMYAQVCTRPBIA-----FVVGMLGRYLSNPGSQHWKAAKKVLRYLQ 256


>tr|A5B1E7|A5B1E7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_037084 PE=4 SV=1
          Length = 246

 Score = 39.7 bits (91), Expect = 0.11
 Identities = 21/54 (38%), Positives = 35/54 (64%)
 Frame = -2

Query: 375 SSVFGTLMYDLLVLRPNIATAIRAFVVGLVSRAMTHTSMMHHGAVQVITEYLQD 214
           +SV G+LMY ++  RP+I     A+ VG+V+R +++   +H  AV+ I  YL+D
Sbjct: 78  ASVVGSLMYVMVCTRPDI-----AYAVGVVNRFLSNPGRLHWEAVKWIMRYLRD 126


>tr|A5BAP9|A5BAP9_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_021825 PE=4 SV=1
          Length = 849

 Score = 39.3 bits (90), Expect = 0.14
 Identities = 21/53 (39%), Positives = 32/53 (60%)
 Frame = -2

Query: 375 SSVFGTLMYDLLVLRPNIATAIRAFVVGLVSRAMTHTSMMHHGAVQVITEYLQ 217
           SSV G+LMY  +  RP+IA     FVVG++ R++++    H  A + +  YLQ
Sbjct: 686 SSVVGSLMYAQVCTRPDIA-----FVVGMLGRSLSNLGSQHWKAAKKVLRYLQ 733


>tr|A5APH6|A5APH6_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_018181 PE=4 SV=1
          Length = 1069

 Score = 39.3 bits (90), Expect = 0.14
 Identities = 32/87 (36%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
 Frame = -2

Query: 375  SSVFGTLMYDLLVLRPNIATAIRAFVVGLVSRAMTHTSMMHHGAVQVITEYLQD------ 214
            +S  G+LMY ++  RP+IA A     VG+VSR M+     H  AV+ I  YL+       
Sbjct: 980  ASAIGSLMYAMMCTRPDIAHA-----VGVVSRFMSRPGKQHWEAVKWILRYLKSASLKLQ 1034

Query: 213  --MHVDSSRDIRFRTPLKST*GHALAL 139
              + VD + DI  R   KST G    L
Sbjct: 1035 GYVDVDFAGDIDSR---KSTIGFVFTL 1058


>tr|B8YLY6|B8YLY6_MEDTR Gag-Pol polyprotein OS=Medicago truncatula
            PE=4 SV=1
          Length = 1305

 Score = 38.9 bits (89), Expect = 0.18
 Identities = 27/87 (31%), Positives = 43/87 (49%)
 Frame = -2

Query: 477  PVRVEIPTTDRLAEVTTHGVDAIGMDMLAEITRLSSVFGTLMYDLLVLRPNIATAIRAFV 298
            P+   +P   +L+   +   +A  M+M       +S  G+LMY ++  RP+IA A     
Sbjct: 1057 PISTPLPVNFKLSSGMSPSNEAERMEMSR--VPYASAVGSLMYAMICTRPDIAQA----- 1109

Query: 297  VGLVSRAMTHTSMMHHGAVQVITEYLQ 217
            VG+VSR M      H  AV+ I  Y++
Sbjct: 1110 VGVVSRFMADPGKEHWNAVKRIMRYIK 1136


>tr|B8YLY5|B8YLY5_MEDTR Gag-Pol polyprotein OS=Medicago truncatula
            PE=4 SV=1
          Length = 1305

 Score = 38.9 bits (89), Expect = 0.18
 Identities = 27/87 (31%), Positives = 43/87 (49%)
 Frame = -2

Query: 477  PVRVEIPTTDRLAEVTTHGVDAIGMDMLAEITRLSSVFGTLMYDLLVLRPNIATAIRAFV 298
            P+   +P   +L+   +   +A  M+M       +S  G+LMY ++  RP+IA A     
Sbjct: 1057 PISTPLPVNFKLSSGMSPSNEAERMEMSR--VPYASAVGSLMYAMICTRPDIAQA----- 1109

Query: 297  VGLVSRAMTHTSMMHHGAVQVITEYLQ 217
            VG+VSR M      H  AV+ I  Y++
Sbjct: 1110 VGVVSRFMADPGKEHWNAVKRIMRYIK 1136


>tr|B8YLY4|B8YLY4_MEDTR Gag-Pol polyprotein OS=Medicago truncatula
            PE=4 SV=1
          Length = 1305

 Score = 38.9 bits (89), Expect = 0.18
 Identities = 27/87 (31%), Positives = 43/87 (49%)
 Frame = -2

Query: 477  PVRVEIPTTDRLAEVTTHGVDAIGMDMLAEITRLSSVFGTLMYDLLVLRPNIATAIRAFV 298
            P+   +P   +L+   +   +A  M+M       +S  G+LMY ++  RP+IA A     
Sbjct: 1057 PISTPLPVNFKLSSGMSPSNEAERMEMSR--VPYASAVGSLMYAMICTRPDIAQA----- 1109

Query: 297  VGLVSRAMTHTSMMHHGAVQVITEYLQ 217
            VG+VSR M      H  AV+ I  Y++
Sbjct: 1110 VGVVSRFMADPGKEHWNAVKRIMRYIK 1136


>tr|B8YLY3|B8YLY3_MEDTR Gag-Pol polyprotein OS=Medicago truncatula
            PE=4 SV=1
          Length = 1305

 Score = 38.9 bits (89), Expect = 0.18
 Identities = 27/87 (31%), Positives = 43/87 (49%)
 Frame = -2

Query: 477  PVRVEIPTTDRLAEVTTHGVDAIGMDMLAEITRLSSVFGTLMYDLLVLRPNIATAIRAFV 298
            P+   +P   +L+   +   +A  M+M       +S  G+LMY ++  RP+IA A     
Sbjct: 1057 PISTPLPVNFKLSSGMSPSNEAERMEMSR--VPYASAVGSLMYAMICTRPDIAQA----- 1109

Query: 297  VGLVSRAMTHTSMMHHGAVQVITEYLQ 217
            VG+VSR M      H  AV+ I  Y++
Sbjct: 1110 VGVVSRFMADPGKEHWNAVKRIMRYIK 1136