BP919888
Clone id YMU001_000130_C11
Library
Length 410
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000130_C11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CCGCTCGAGCGGCCTGATTTCTCTGTTCTGTCACGCTCTCCACTTCTCTATCTCTCTCTC
TTTCTATTTCCCTATTTGACCTACGGCTTGTGTCCATGGCGTTTCTTCTATCCGTTTGAC
CTACGGCTTGCCATAGGCGCTCTTGACATTGCTTTAAGACTACCTAATGGACTACGAATG
GTTTCGGTAGGCATAGAGGTCATTTTCGAAATCCGTTTGCGTTTTTCCGTAGAAAAACGT
AACCGGATTTGACCTACGGCTTGTGTATTTGGCGTTAATTCAAACCCATTGACCTACGGC
TTACCATACGCGCTCTTGACATTGCTTTAAGACTATCTAATGGACTACGGATAGTTTCAG
TAGGCATAGAAGTCATTTCCGAAATCCGTTTGCATTTTTCCGTAGAACAA
■■Homology search results ■■ -
sp_hit_id A2AJT4
Definition sp|A2AJT4|SFR18_MOUSE Splicing factor, arginine/serine-rich 18 OS=Mus musculus
Align length 72
Score (bit) 30.4
E-value 2.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919888|Adiantum capillus-veneris mRNA, clone:
YMU001_000130_C11.
(410 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A2AJT4|SFR18_MOUSE Splicing factor, arginine/serine-rich 18 O... 30 2.9
sp|A7MD48|K1853_HUMAN Uncharacterized protein KIAA1853 OS=Homo s... 30 2.9
sp|Q8TF01|SFR18_HUMAN Splicing factor, arginine/serine-rich 18 O... 30 3.8
sp|O83326|Y304_TREPA Uncharacterized protein TP_0304 OS=Treponem... 29 6.5

>sp|A2AJT4|SFR18_MOUSE Splicing factor, arginine/serine-rich 18
OS=Mus musculus GN=Sfrs18 PE=2 SV=1
Length = 805

Score = 30.4 bits (67), Expect = 2.9
Identities = 23/72 (31%), Positives = 34/72 (47%)
Frame = -1

Query: 233 STEKRKRISKMTSMPTETIRSPLGSLKAMSRAPMASRRSNG*KKRHGHKP*VK*GNRKRE 54
S + +R S+ S T RS ++ R + R N H HK K +RK+E
Sbjct: 611 SPSRDRRRSRSRSRDRRTNRSSRS--RSRDRRKIEDPRGNLSGNSHKHKGEAKEQDRKKE 668

Query: 53 R*RSGERDRTEK 18
R RS ++DR +K
Sbjct: 669 RSRSVDKDRRKK 680


>sp|A7MD48|K1853_HUMAN Uncharacterized protein KIAA1853 OS=Homo
sapiens GN=KIAA1853 PE=2 SV=1
Length = 611

Score = 30.4 bits (67), Expect = 2.9
Identities = 28/91 (30%), Positives = 39/91 (42%)
Frame = -1

Query: 281 ELTPNTQAVGQIRLRFSTEKRKRISKMTSMPTETIRSPLGSLKAMSRAPMASRRSNG*KK 102
+LTP + G+ + + ST K++R S S SP+ K S RRS K+
Sbjct: 99 DLTPPPSSRGKKKKKKSTRKKRRRSSSYSP------SPVKKKKKKSSKKHKRRRSFSKKR 152

Query: 101 RHGHKP*VK*GNRKRER*RSGERDRTEKSGR 9
RH K R +R + R R KS R
Sbjct: 153 RHSSSS-PKSKRRDEKRHKKQSRSRPRKSHR 182


>sp|Q8TF01|SFR18_HUMAN Splicing factor, arginine/serine-rich 18
OS=Homo sapiens GN=SFRS18 PE=1 SV=2
Length = 805

Score = 30.0 bits (66), Expect = 3.8
Identities = 22/72 (30%), Positives = 34/72 (47%)
Frame = -1

Query: 233 STEKRKRISKMTSMPTETIRSPLGSLKAMSRAPMASRRSNG*KKRHGHKP*VK*GNRKRE 54
S + +R S+ S T R+ ++ R + +R N H HK K RK+E
Sbjct: 611 SPSRERRRSRSRSRDRRTNRASRS--RSRDRRKIDDQRGNLSGNSHKHKGEAKEQERKKE 668

Query: 53 R*RSGERDRTEK 18
R RS ++DR +K
Sbjct: 669 RSRSIDKDRKKK 680


>sp|O83326|Y304_TREPA Uncharacterized protein TP_0304 OS=Treponema
pallidum GN=TP_0304 PE=4 SV=1
Length = 1039

Score = 29.3 bits (64), Expect = 6.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2

Query: 14 LISLFCHALHFSISLSFYFPI*PTACVHGVS 106
L+S+F H L ISL F+ P+ P GV+
Sbjct: 179 LLSIFYHELTHKISLDFFMPLLPPLFTEGVA 209


tr_hit_id B7PYH0
Definition tr|B7PYH0|B7PYH0_IXOSC Alternative splicing factor SRp55/B52/SRp75, putative OS=Ixodes scapularis
Align length 99
Score (bit) 35.4
E-value 1.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919888|Adiantum capillus-veneris mRNA, clone:
YMU001_000130_C11.
(410 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B7PYH0|B7PYH0_IXOSC Alternative splicing factor SRp55/B52/SRp... 35 1.4
tr|B3MYH9|B3MYH9_DROAN GF22145 OS=Drosophila ananassae GN=GF2214... 33 5.5

>tr|B7PYH0|B7PYH0_IXOSC Alternative splicing factor SRp55/B52/SRp75,
putative OS=Ixodes scapularis GN=IscW_ISCW010321 PE=4
SV=1
Length = 364

Score = 35.4 bits (80), Expect = 1.4
Identities = 33/99 (33%), Positives = 42/99 (42%), Gaps = 4/99 (4%)
Frame = -1

Query: 290 NGFELTPNTQAVGQIRLRFSTEKRKRISKMTSMPTETIRSPLGSLKAMSRAPMASRRSNG 111
N + NT G+ R+R EKR R S+ S RS ++ SR+ SRRS
Sbjct: 154 NALDKLDNTDLSGR-RIRLVEEKRLRRSRSRSRSRSRSRSRSSRSRSRSRSARRSRRSRS 212

Query: 110 *KKRHGHKP*VK*GNRKRER----*RSGERDRTEKSGRS 6
+ P VK +R R R RS R RT RS
Sbjct: 213 HSRSRSRSP-VKRRSRSRSRTPVKRRSRSRSRTPVKRRS 250


>tr|B3MYH9|B3MYH9_DROAN GF22145 OS=Drosophila ananassae GN=GF22145
PE=4 SV=1
Length = 425

Score = 33.5 bits (75), Expect = 5.5
Identities = 23/74 (31%), Positives = 35/74 (47%)
Frame = -1

Query: 227 EKRKRISKMTSMPTETIRSPLGSLKAMSRAPMASRRSNG*KKRHGHKP*VK*GNRKRER* 48
EKR + PTE ++ + R +S R N ++RH H + R+RER
Sbjct: 71 EKRSKPQPAEEKPTEELQEQRSKWDSPERG--SSSRQNVKQRRHSHS---RSKERERERE 125

Query: 47 RSGERDRTEKSGRS 6
R +RDR ++ RS
Sbjct: 126 RDRDRDRGDRHDRS 139