NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919889
Clone id YMU001_000130_C12
Library
Length 539
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000130_C12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAAAGTGAGCAAACTGTTAAGCTCACAAGCTTCTACAATAGGCAAACAAATTTGACAAAA
TTTTGGTAGAGTCTCCCTTGTAACTGGAGAAAAAACTCAACAGTAAACCGTAAAAGAGAC
AACACAAAATGCCCAAATGGCCAAATCCGGGAATGTTGTCGTCCGGAATCACCTCACAAA
GTCATACAAAGAGCAAGCATGCTCTAGTCGGAGTACCACTCAACGAAATATTGACAAAAC
CTGTCAACTTGTTTGCATAAACAGGCTTCAATGGATGTGCATAAACAAGTGCTCAACTGT
GAGCATCAACCATGCATCCAAAATACTTAGCCATGATGGCTCCACATCTCCACCTCTGTT
CCCACATAGAGTATACATCAACACAAAACTATGTGCCGAGAAACTGCATACGGATGTACC
TTAGTCCAAGGACCACATCCCAAATCAACAATTGCAAGTTAAATCAGTACCCAATGGACT
CCACAATGTGACGTACATATCCCCAGACGCAATCTACACAACGATTTACAGTATACAAG
■■Homology search results ■■ -
sp_hit_id Q55D99
Definition sp|Q55D99|PAKA_DICDI Serine/threonine-protein kinase pakA OS=Dictyostelium discoideum
Align length 61
Score (bit) 32.7
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919889|Adiantum capillus-veneris mRNA, clone:
YMU001_000130_C12.
         (539 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q55D99|PAKA_DICDI Serine/threonine-protein kinase pakA OS=Dic...    33   1.2  
sp|Q5RL51|GSTCD_MOUSE Glutathione S-transferase C-terminal domai...    32   2.0  
sp|Q6FVM9|SRB8_CANGA Mediator of RNA polymerase II transcription...    31   4.4  
sp|Q58344|Y934_METJA Uncharacterized polyferredoxin-like protein...    30   5.7  
sp|P53129|MON1_YEAST Vacuolar fusion protein MON1 OS=Saccharomyc...    30   7.5  
sp|Q4R6Y8|GSTCD_MACFA Glutathione S-transferase C-terminal domai...    30   9.8  
sp|Q8NEC7|GSTCD_HUMAN Glutathione S-transferase C-terminal domai...    30   9.8  

>sp|Q55D99|PAKA_DICDI Serine/threonine-protein kinase pakA
           OS=Dictyostelium discoideum GN=pakA PE=1 SV=1
          Length = 1197

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 22/61 (36%), Positives = 24/61 (39%)
 Frame = +3

Query: 93  KLNSKP*KRQHKMPKWPNPGMLSSGITSQSHTKSKHALVGVPLNEILTKPVNLFA*TGFN 272
           KL SK  K  H   K P+ G    G   +   K     VG P N      VN  A TGF 
Sbjct: 779 KLFSKEKKDHHSSSKSPSSGSSGGGEVDEKKKKKLSPRVGTPFNVKHDVHVNFNADTGFE 838

Query: 273 G 275
           G
Sbjct: 839 G 839


>sp|Q5RL51|GSTCD_MOUSE Glutathione S-transferase C-terminal
           domain-containing protein OS=Mus musculus GN=Gstcd PE=2
           SV=1
          Length = 634

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 2/110 (1%)
 Frame = +2

Query: 155 VVVRNHLTKSYKEQACSSRSTTQRNIDKTCQLVCINRLQWMCINKCSTVSINHASKILSH 334
           VV+R+ + KSY+ +             KTC   C    QW    +   ++I  A +    
Sbjct: 108 VVLRHIIQKSYEAEPSRKEILELLGFKKTCLKACAEVSQW---TRLCELTIPLAVENFLQ 164

Query: 335 DGSTSPPLFPHRVYINTKLCAE--KLHTDVP*SKDHIPNQQLQVKSVPNG 478
           + S  PP  P  +    +  +E  ++H D    +  +  Q+      P+G
Sbjct: 165 ESSEHPPTIPEEILELERKLSEPVRVHNDDKLRRQKLKQQKAAGSEPPSG 214


>sp|Q6FVM9|SRB8_CANGA Mediator of RNA polymerase II transcription
            subunit 12 OS=Candida glabrata GN=SRB8 PE=3 SV=1
          Length = 1358

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 23/74 (31%), Positives = 31/74 (41%)
 Frame = +3

Query: 285  TSAQL*ASTMHPKYLAMMAPHLHLCSHIEYTSTQNYVPRNCIRMYLSPRTTSQINNCKLN 464
            TS+   +   H K  A+    LH     +YT      P  CI+ Y   + T  INNC LN
Sbjct: 1293 TSSTTPSEGTHKKRCAIWDKRLH-----KYTGELQRKPYYCIKNY---QDTEDINNCSLN 1344

Query: 465  QYPMDSTM*RTYPQ 506
                D+   R  P+
Sbjct: 1345 LSLFDARYERNNPR 1358


>sp|Q58344|Y934_METJA Uncharacterized polyferredoxin-like protein
           MJ0934 OS=Methanocaldococcus jannaschii GN=MJ0934 PE=4
           SV=1
          Length = 209

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 102 C*VFSPVTRETLPKFCQICLPIVEACELNSLLT 4
           C     + +E  P+ C++CL  +E C L ++LT
Sbjct: 139 CEAIDIINKEINPEKCKLCLSCIEKCPLQAILT 171


>sp|P53129|MON1_YEAST Vacuolar fusion protein MON1 OS=Saccharomyces
           cerevisiae GN=MON1 PE=1 SV=1
          Length = 644

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = +2

Query: 140 AKSGNVVVRNHLTKSYKEQACSSRSTTQRNIDKTCQLVCINRLQWMCINKCSTVSINHAS 319
           +K  N  +RN+L            ST   N+D+ C L+C      + +N    +  NH+S
Sbjct: 286 SKRENFDLRNYL-----------ESTDFENLDEICSLICNRMFPDLLLNSLQCLPFNHSS 334

Query: 320 KI 325
           ++
Sbjct: 335 RL 336


>sp|Q4R6Y8|GSTCD_MACFA Glutathione S-transferase C-terminal
           domain-containing protein OS=Macaca fascicularis
           GN=GSTCD PE=2 SV=1
          Length = 633

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
 Frame = +2

Query: 155 VVVRNHLTKSYKEQACSSRSTTQRNIDKTCQLVCINRLQWMCINKCSTVSINHASKILSH 334
           VV+R+ + KSY+               KTC   C    QW    +   ++I  A +    
Sbjct: 107 VVLRHIIQKSYEADPLKKELLELLGFKKTCLKACAEVSQW---TRLCELTIPLAIENFLR 163

Query: 335 DGSTSPPLFPHRVYINTKLCAE--KLHTD 415
           + S  PP  P  +    K  +E  ++H D
Sbjct: 164 ESSDQPPTIPVEILQLEKKLSEPVRVHND 192


>sp|Q8NEC7|GSTCD_HUMAN Glutathione S-transferase C-terminal
           domain-containing protein OS=Homo sapiens GN=GSTCD PE=1
           SV=2
          Length = 633

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
 Frame = +2

Query: 155 VVVRNHLTKSYKEQACSSRSTTQRNIDKTCQLVCINRLQWMCINKCSTVSINHASKILSH 334
           VV+R+ + KSY+               KTC   C    QW    +   ++I  A +    
Sbjct: 107 VVLRHIIQKSYEADPLKKELLELLGFKKTCLKACAEVSQW---TRLCELTIPLAIENFLR 163

Query: 335 DGSTSPPLFPHRVYINTKLCAE--KLHTD 415
           + S  PP  P  +    K  +E  ++H D
Sbjct: 164 ESSDQPPTIPVEILQLEKKLSEPVRVHND 192
tr_hit_id B8MFE0
Definition tr|B8MFE0|B8MFE0_9EURO Multicopper oxidase, putative OS=Talaromyces stipitatus ATCC 10500
Align length 79
Score (bit) 33.9
E-value 5.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919889|Adiantum capillus-veneris mRNA, clone:
YMU001_000130_C12.
         (539 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8MFE0|B8MFE0_9EURO Multicopper oxidase, putative OS=Talaromy...    34   5.6  
tr|A5X2W0|A5X2W0_ONCMY CCAAT/enhancer binding protein delta2 OS=...    33   7.3  
tr|B0VZQ9|B0VZQ9_CULQU Zinc finger protein 60 OS=Culex quinquefa...    33   7.3  
tr|Q232Z0|Q232Z0_TETTH Putative uncharacterized protein OS=Tetra...    31   8.5  
tr|Q7RE75|Q7RE75_PLAYO Putative uncharacterized protein PY05192 ...    33   9.5  
tr|B3N6J5|B3N6J5_DROER GG24133 OS=Drosophila erecta GN=GG24133 P...    33   9.5  

>tr|B8MFE0|B8MFE0_9EURO Multicopper oxidase, putative OS=Talaromyces
           stipitatus ATCC 10500 GN=TSTA_017490 PE=4 SV=1
          Length = 558

 Score = 33.9 bits (76), Expect = 5.6
 Identities = 21/79 (26%), Positives = 36/79 (45%)
 Frame = +2

Query: 128 NAQMAKSGNVVVRNHLTKSYKEQACSSRSTTQRNIDKTCQLVCINRLQWMCINKCSTVSI 307
           N  ++  G V     LT+ +  +A  +  TT ++I+ T        + W   N   T + 
Sbjct: 355 NYNISSQGCVEDSLELTEPFFPEALPTEITTYQDINITFGANATGAMVWFANNISFTANY 414

Query: 308 NHASKILSHDGSTSPPLFP 364
           NH   +L+ +G+TS P  P
Sbjct: 415 NHPLLLLAKEGNTSYPYDP 433


>tr|A5X2W0|A5X2W0_ONCMY CCAAT/enhancer binding protein delta2
           OS=Oncorhynchus mykiss PE=2 SV=1
          Length = 304

 Score = 33.5 bits (75), Expect = 7.3
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
 Frame = +3

Query: 342 PHLHLCSHIEYTSTQNYVPRNCIRMYLSPRTTS-----QINNCKLNQYPMDS 482
           PHL LC+   +    N V +     Y+   TTS     Q++NC  N YP+ S
Sbjct: 84  PHLELCNDELFLDLFNTVKQEKTDFYMPSSTTSSSNMQQLSNCSTNAYPVGS 135


>tr|B0VZQ9|B0VZQ9_CULQU Zinc finger protein 60 OS=Culex
           quinquefasciatus GN=CpipJ_CPIJ000178 PE=4 SV=1
          Length = 528

 Score = 33.5 bits (75), Expect = 7.3
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
 Frame = +2

Query: 161 VRNHLTKSYKEQACSSRSTTQRNIDKTCQLVC-----INRLQWMCINKCSTVSINHASKI 325
           +R H+ +   +  C   S+ Q N+DK  Q V        ++ + C   CS V ++H   I
Sbjct: 318 LRAHMQRHKGQVRCKVCSSAQHNMDKLYQHVTKFHRDTRKMTYDCCPNCSEVHLSHQQMI 377

Query: 326 LSHDGSTSPPLFPHRVYINTKLC 394
              +    PP    R  +   +C
Sbjct: 378 EHKESCLLPPSLYGRFRLECHIC 400


>tr|Q232Z0|Q232Z0_TETTH Putative uncharacterized protein
            OS=Tetrahymena thermophila SB210 GN=TTHERM_00394630 PE=4
            SV=1
          Length = 1794

 Score = 30.8 bits (68), Expect(2) = 8.5
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = +3

Query: 357  CSHIEYTSTQN----YVPRNCIRMYLSPRTTSQINNCKLNQYPMDSTM*RTYPQTQST 518
            CS  +Y  T      Y   NC ++ L+   +   NNCKLNQ+  D+T+   Y   Q T
Sbjct: 1107 CSQTQYKQTTAVDPFYTCLNCNQLILAADCS---NNCKLNQFFWDTTIATQYKCRQCT 1161



 Score = 20.8 bits (42), Expect(2) = 8.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 233  DKTCQLVCINRLQWMCINKCSTV 301
            +K  Q+ C N+ Q  C+NKC  V
Sbjct: 1075 NKCTQIKC-NQDQNTCVNKCIMV 1096


>tr|Q7RE75|Q7RE75_PLAYO Putative uncharacterized protein PY05192
           OS=Plasmodium yoelii yoelii GN=PY05192 PE=4 SV=1
          Length = 677

 Score = 33.1 bits (74), Expect = 9.5
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
 Frame = +2

Query: 209 RSTTQRNIDKTCQL------VCINRLQWMCINKCSTVSINHASKILSHDGSTSPP 355
           ++TTQ N+D T ++      VC N +  +C N  S+V  N+ S   S DG  + P
Sbjct: 508 QTTTQHNLDTTPKIGNNVSSVCSNNVSSVCSNNVSSVCSNNVSSGDSSDGKGAGP 562


>tr|B3N6J5|B3N6J5_DROER GG24133 OS=Drosophila erecta GN=GG24133 PE=4
           SV=1
          Length = 612

 Score = 33.1 bits (74), Expect = 9.5
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = +2

Query: 224 RNIDKTCQLVCINRLQWMCINKCSTVSINHAS---KILSHDGSTSPPLFPHRVYINTKLC 394
           R   K C ++    L W+  + C T   ++ S    +L+   +TSPP F H    NT + 
Sbjct: 255 RTFGKYCDVIKDANLNWLEWSVCFTKEFHNRSAVLNLLASSAATSPPHFTHYNIHNTNVN 314

Query: 395 AEKLHTD 415
             + HT+
Sbjct: 315 GHRGHTN 321