BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919892|Adiantum capillus-veneris mRNA, clone:
YMU001_000130_D04.
         (450 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A9WH66|RL3_CHLAA 50S ribosomal protein L3 OS=Chloroflexus aur...    33   0.56 
sp|Q6UXH1|CREL2_HUMAN Cysteine-rich with EGF-like domain protein...    32   1.7  
sp|Q3ZZM4|RL3_DEHSC 50S ribosomal protein L3 OS=Dehalococcoides ...    29   8.0  
sp|A5FRY9|RL3_DEHSB 50S ribosomal protein L3 OS=Dehalococcoides ...    29   8.0  
sp|A8GHR1|MDTD_SERP5 Putative multidrug resistance protein mdtD ...    29   8.2  

>sp|A9WH66|RL3_CHLAA 50S ribosomal protein L3 OS=Chloroflexus
           aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)
           GN=rplC PE=3 SV=1
          Length = 210

 Score = 33.1 bits (74), Expect = 0.56
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +2

Query: 272 RGGRKTQSKSSRHLPNEGSGVTTTPQQVWHG 364
           RGG KT  +S RH      G  TTP +VW G
Sbjct: 129 RGGPKTHGQSDRHRAPGSIGAGTTPGRVWKG 159


>sp|Q6UXH1|CREL2_HUMAN Cysteine-rich with EGF-like domain protein 2
           OS=Homo sapiens GN=CRELD2 PE=1 SV=1
          Length = 353

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -1

Query: 408 ILRLPAAPDALKLRRPCHTCCGVV 337
           +L LP AP+A K   PCH C G+V
Sbjct: 15  LLLLPPAPEAAKKPTPCHRCRGLV 38


>sp|Q3ZZM4|RL3_DEHSC 50S ribosomal protein L3 OS=Dehalococcoides sp.
           (strain CBDB1) GN=rplC PE=3 SV=1
          Length = 205

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 275 GGRKTQSKSSRHLPNEGSGVTTTPQQVWHG 364
           GG KT  +S RH      G TTTP +++ G
Sbjct: 126 GGPKTHGQSDRHRAPGSIGSTTTPGRIYKG 155


>sp|A5FRY9|RL3_DEHSB 50S ribosomal protein L3 OS=Dehalococcoides sp.
           (strain BAV1) GN=rplC PE=3 SV=1
          Length = 205

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 275 GGRKTQSKSSRHLPNEGSGVTTTPQQVWHG 364
           GG KT  +S RH      G TTTP +++ G
Sbjct: 126 GGPKTHGQSDRHRAPGSIGSTTTPGRIYKG 155


>sp|A8GHR1|MDTD_SERP5 Putative multidrug resistance protein mdtD
           OS=Serratia proteamaculans (strain 568) GN=mdtD PE=3
           SV=1
          Length = 477

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -1

Query: 438 YLLAVCCMLGILRLPAAPDALKLRRPCHTCCGVVVTPEPSFGKCRL 301
           ++ + CCM  I+ LPA   A   R P  T     +T EP  G  RL
Sbjct: 433 FIYSYCCMALIIALPALAFA---RVPADTTTNRTLTKEPGTGSTRL 475

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919892|Adiantum capillus-veneris mRNA, clone:
YMU001_000130_D04.
         (450 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9SZD8|Q9SZD8_ARATH Putative uncharacterized protein F19B15.1...    50   6e-05
tr|Q9ZQF8|Q9ZQF8_ARATH Putative non-LTR retroelement reverse tra...    46   8e-04
tr|Q9SIS9|Q9SIS9_ARATH Putative non-LTR retroelement reverse tra...    46   8e-04
tr|O64712|O64712_ARATH Putative reverse transcriptase OS=Arabido...    46   0.001
tr|Q1SMZ7|Q1SMZ7_MEDTR Ribonuclease H OS=Medicago truncatula GN=...    45   0.002
tr|Q0J4I9|Q0J4I9_ORYSJ Os08g0511200 protein OS=Oryza sativa subs...    43   0.007
tr|B8BCC1|B8BCC1_ORYSI Putative uncharacterized protein OS=Oryza...    43   0.007
tr|A3BUR5|A3BUR5_ORYSJ Putative uncharacterized protein OS=Oryza...    43   0.007
tr|Q9SLE9|Q9SLE9_ARATH Putative non-LTR retroelement reverse tra...    43   0.009
tr|Q9LVT7|Q9LVT7_ARATH Similarity to non-LTR retroelement revers...    43   0.009
tr|Q9C697|Q9C697_ARATH Reverse transcriptase, putative; 16838-20...    42   0.012
tr|A3B2E1|A3B2E1_ORYSJ Putative uncharacterized protein OS=Oryza...    41   0.026
tr|Q76B32|Q76B32_TETNG Reverse transcriptase OS=Tetraodon nigrov...    41   0.034
tr|Q4T7P5|Q4T7P5_TETNG Chromosome undetermined SCAF8057, whole g...    41   0.034
tr|Q9SHP2|Q9SHP2_ARATH Putative non-LTR retroelement reverse tra...    41   0.034
tr|Q9LSE9|Q9LSE9_ARATH Reverse transcriptase-like protein OS=Ara...    41   0.034
tr|Q01N39|Q01N39_ORYSA H0215A08.3 protein OS=Oryza sativa GN=H02...    41   0.034
tr|B8A0C0|B8A0C0_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.100
tr|Q2HVE2|Q2HVE2_MEDTR RNA-directed DNA polymerase (Reverse tran...    39   0.13 
tr|Q2A9F9|Q2A9F9_BRAOL Putative uncharacterized protein OS=Brass...    39   0.13 
tr|Q0JM72|Q0JM72_ORYSJ Os01g0531300 protein OS=Oryza sativa subs...    39   0.13 
tr|Q7XJS2|Q7XJS2_ARATH Putative non-LTR retroelement reverse tra...    39   0.17 
tr|Q75LZ3|Q75LZ3_ORYSJ Putative uncharacterized protein P0676G05...    39   0.17 
tr|Q2HUN6|Q2HUN6_MEDTR RNA-directed DNA polymerase (Reverse tran...    39   0.17 
tr|O81630|O81630_ARATH F8M12.22 protein OS=Arabidopsis thaliana ...    39   0.17 
tr|O22148|O22148_ARATH Putative non-LTR retroelement reverse tra...    39   0.17 
tr|Q8SA93|Q8SA93_MAIZE Putative polyprotein OS=Zea mays GN=Z195D...    38   0.22 
tr|Q6K4X1|Q6K4X1_ORYSJ Putative uncharacterized protein OSJNBa00...    38   0.22 
tr|Q2QSK7|Q2QSK7_ORYSJ Retrotransposon protein, putative, LINE s...    38   0.29 
tr|Q9SKJ4|Q9SKJ4_ARATH Putative non-LTR retroelement reverse tra...    37   0.38 

>tr|Q9SZD8|Q9SZD8_ARATH Putative uncharacterized protein F19B15.120
           (Putative reverse transcriptase/RNA-dependent DNA
           polymerase) (Putative uncharacterized protein AT4g29090)
           OS=Arabidopsis thaliana GN=F19B15.120 PE=2 SV=1
          Length = 575

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
 Frame = -3

Query: 442 ALPVGSVLHARHIAP-SRCPRCLEAEETVPHLLWCCRHSRA--FIRQVSTALRLRFPSAS 272
           +LPV   L  RH++  S C RC   +ETV HLL+ C  +R    I  +   L   +  + 
Sbjct: 277 SLPVAGALAYRHLSKESACIRCPSCKETVNHLLFKCTFARLTWAISSIPIPLGGEWADSI 336

Query: 271 FHRRFWLFGVLR-SPQSQFAVFFTWVRFWTMWAIWHHRNSLMF*G 140
           +   +W+F +   +PQ + A   + +  W +W +W +RN L+F G
Sbjct: 337 YVNLYWVFNLGNGNPQWEKA---SQLVPWLLWRLWKNRNELVFRG 378


>tr|Q9ZQF8|Q9ZQF8_ARATH Putative non-LTR retroelement reverse
            transcriptase OS=Arabidopsis thaliana GN=At2g15540 PE=2
            SV=1
          Length = 1225

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 34/111 (30%), Positives = 47/111 (42%), Gaps = 4/111 (3%)
 Frame = -3

Query: 445  GALPVGSVLHARHIAPSR-CPRCLEAEETVPHLLWCCRHSR-AFIRQVSTALRLRFPSAS 272
            G L     L +RHI   + CPRC   EE++ HLL+ C  SR  +      +    FP  S
Sbjct: 945  GCLATNQRLFSRHIGTEKVCPRCGAEEESINHLLFLCPPSRQIWALSPIPSSEYIFPRNS 1004

Query: 271  FHRRFWLFGVLRSPQSQFAVFFTWVRF--WTMWAIWHHRNSLMF*GTFVDP 125
                F+ F  L S   +F +    +    W +W IW  RN  +F      P
Sbjct: 1005 L---FYNFDFLLSRGKEFDIAEDIMEIFPWILWYIWKSRNRFIFENVIESP 1052


>tr|Q9SIS9|Q9SIS9_ARATH Putative non-LTR retroelement reverse
            transcriptase OS=Arabidopsis thaliana GN=At2g01840 PE=2
            SV=1
          Length = 1715

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
 Frame = -3

Query: 445  GALPVGSVLHARHI-APSRCPRCLEAEETVPHLLWCCRHSRAFIRQV--STALRLRFPSA 275
            GAL   + L  R+I A   C RC  A+ET+ H+++ C +++   R    S + RL F + 
Sbjct: 1407 GALSTTTQLRNRNIPADPTCQRCCNADETINHIIFTCSYAQVVWRSANFSGSNRLCF-TD 1465

Query: 274  SFHRRFWLFGVLRSPQSQ-FAVFFTWVRFWTMWAIWHHRNSLMF*GTFVDPFPY 116
            +      L  +L+  ++Q   +    + FW MW +W  RN  +F    +D FP+
Sbjct: 1466 NLEENIRL--ILQGKKNQNLPILNGLMPFWIMWRLWKSRNEYLF--QQLDRFPW 1515


>tr|O64712|O64712_ARATH Putative reverse transcriptase
           OS=Arabidopsis thaliana GN=At2g02650 PE=2 SV=1
          Length = 365

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
 Frame = -3

Query: 445 GALPVGSVLHARHI-APSRCPRCLEAEETVPHLLWCCRHSRAFIRQVSTALRLRF-PSAS 272
           GAL   + L +R+I A   C RC   EET+ H+++ C ++++  R  +  +  ++ P +S
Sbjct: 56  GALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQSVWRSANIIIGNQWGPPSS 115

Query: 271 FHRRFWLFGVLRSPQSQFAVFFTWVRFWTMWAIWHHRNSLMF 146
           F         L   Q+  ++   ++ FW MW +W  RN  +F
Sbjct: 116 FEDNLNRLIQLSKTQTTNSLD-RFLPFWIMWRLWKSRNVFLF 156


>tr|Q1SMZ7|Q1SMZ7_MEDTR Ribonuclease H OS=Medicago truncatula
           GN=MtrDRAFT_AC139526g25v2 PE=4 SV=1
          Length = 438

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
 Frame = -3

Query: 439 LPVGSVLHARHIAPS-RCPRCLEAEETVPHLLWCCRHSRAFIRQVSTALRLRFPSASFHR 263
           +P  S+LH R+IAPS  C RC E +ET  H +  C  SR+  +++       F + S H 
Sbjct: 144 VPTLSLLHRRNIAPSPTCARCGEEDETFLHCVRDCHFSRSIWQKIGFTGNDFFTATSAHD 203

Query: 262 RFWLFGVLRSPQSQFAVFFTWVRFWTMWAIWHHRN 158
            F + G+  S    F        F  +W  W HRN
Sbjct: 204 WFKI-GMSSSLPDIF--------FGGLWWAWRHRN 229


>tr|Q0J4I9|Q0J4I9_ORYSJ Os08g0511200 protein OS=Oryza sativa subsp.
           japonica GN=Os08g0511200 PE=4 SV=1
          Length = 1176

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
 Frame = -3

Query: 439 LPVGSVLHARHIAPSR-CPRCLEAEETVPHLLWCCRHSRAFIRQVSTALRLRFPSASFHR 263
           LP  + LH ++I P+  C  C  A+ET  HL   C+ ++ F R + T++       +   
Sbjct: 657 LPTKANLHKKNIVPTAGCIVCNCADETATHLFLQCQFAQEFWRALRTSVVSNVQDLAD-- 714

Query: 262 RFWLFGVLRSPQSQFAVFFTWVRFWTMWAIWHHRNSLMF*G 140
              L      P   F VFF        W +W+HR+ ++F G
Sbjct: 715 ---LVAPCHLPVKHFQVFF----LLCFWGLWNHRHDVVFRG 748


>tr|B8BCC1|B8BCC1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_29844 PE=4 SV=1
          Length = 386

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
 Frame = -3

Query: 439 LPVGSVLHARHIAPSR-CPRCLEAEETVPHLLWCCRHSRAFIRQVSTALRLRFPSASFHR 263
           LP  + LH ++I P+  C  C  A+ET  HL   C+ ++ F R + T++       +   
Sbjct: 250 LPTKANLHKKNIVPTAGCIVCNCADETATHLFLQCQFAQEFWRALRTSVVSNVQDLAD-- 307

Query: 262 RFWLFGVLRSPQSQFAVFFTWVRFWTMWAIWHHRNSLMF*G 140
              L      P   F VFF        W +W+HR+ ++F G
Sbjct: 308 ---LVAPCHLPVKHFQVFF----LLCFWGLWNHRHDVVFRG 341


>tr|A3BUR5|A3BUR5_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_026787 PE=4 SV=1
          Length = 777

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
 Frame = -3

Query: 439 LPVGSVLHARHIAPSR-CPRCLEAEETVPHLLWCCRHSRAFIRQVSTALRLRFPSASFHR 263
           LP  + LH ++I P+  C  C  A+ET  HL   C+ ++ F R + T++       +   
Sbjct: 671 LPTKANLHKKNIVPTAGCIVCNCADETATHLFLQCQFAQEFWRALRTSVVSNVQDLAD-- 728

Query: 262 RFWLFGVLRSPQSQFAVFFTWVRFWTMWAIWHHRNSLMF*G 140
              L      P   F VFF        W +W+HR+ ++F G
Sbjct: 729 ---LVAPCHLPVKHFQVFF----LLCFWGLWNHRHDVVFRG 762


>tr|Q9SLE9|Q9SLE9_ARATH Putative non-LTR retroelement reverse
            transcriptase OS=Arabidopsis thaliana GN=At2g16680 PE=2
            SV=1
          Length = 1319

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
 Frame = -3

Query: 445  GALPVGSVLHARHIAPSR-CPRCLEAEETVPHLLWCCRHSRAFIRQVSTALRLRFPSASF 269
            GAL V   L +R I  +  C  C E  ET+ HLL+ C     F RQV     ++ P+  F
Sbjct: 1017 GALAVEDRLRSRGIRTADGCLFCKEEIETINHLLFQC----PFARQVWALSLIQAPATGF 1072

Query: 268  HRRFW--LFGVLRSPQSQFAV--FFTWVRFWTMWAIWHHRNSLMF*GT 137
                +  +  V+++ Q+ F +      V  W +W IW +RN  +F GT
Sbjct: 1073 GTSIFSNINHVIQNSQN-FGIPRHMRTVSPWLLWEIWKNRNKTLFQGT 1119


>tr|Q9LVT7|Q9LVT7_ARATH Similarity to non-LTR retroelement reverse
           transcriptase OS=Arabidopsis thaliana PE=4 SV=1
          Length = 329

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 6/105 (5%)
 Frame = -3

Query: 421 LHARHIA-PSRCPRCLEAEETVPHLLWCCRHSR-AFIRQVSTALRLRFPSASFHRR---- 260
           L+ RHI    +CPRC   EET+ HL++ C  +R  +      +   RF S+S +      
Sbjct: 40  LYFRHIGRDKKCPRCGADEETINHLIFECPPARQVWALSGIPSSPSRFLSSSIYNNLDYL 99

Query: 259 FWLFGVLRSPQSQFAVFFTWVRFWTMWAIWHHRNSLMF*GTFVDP 125
           +W    + + +    VF      W MW IW  RN   F    V P
Sbjct: 100 YWRANEIGACEESLRVF-----PWIMWYIWKARNRKNFESICVQP 139