BP919895 |
Clone id |
YMU001_000130_D09 |
Library |
YMU01 |
Length |
499 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000130_D09. |
Accession |
BP919895 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL829Contig1 |
Sequence |
ATAAATCCTCTAATCCATTTAAAACTGCTTTTAGACCTTTGCCACCACTTACTCCGGCTG CTGCTACAGATGAATCCTCTCCAGTTTCAGGGAGCATCGGCTGAGTAAGGCTCTTTCCGG TCCCGGACATTGTAAAGAGGTCAAGCAACTGGCCTTTGTCCATCTTGTCAAGACTTGCGT TTTCGGCATTCACAACAGTGTTTGCCACCGATATCTTGAAACGTTGAAGATTCATGACTT TCTCCTCCAGAGTGCCCCGCATGATCAACCTGTGAACATTGACGACTCTTTTCTGTCCCA GCCTGTGCGCTCTATCCATTGCCTGAAGATCCCGCATGGGATTCCAATCGTGTTCCATAA AAACAACAGTATCAGCTGTTGTCAAGTTCAGACCAAGGCCCCCCACATGAGTTGTCAAAA GTAGAACATCAATTGTAGGATCAGAGTTGAAAGCCTTCACTATTTCAAACCGTTTATCTG GTTCAACCGATCCATCTAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O14981 |
Definition |
sp|O14981|BTAF1_HUMAN TATA-binding protein-associated factor 172 OS=Homo sapiens |
Align length |
130 |
Score (bit) |
164.0 |
E-value |
3.0e-40 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SFY1 |
Definition |
tr|A9SFY1|A9SFY1_PHYPA SNF2 superfamily chromatin remodeling protein OS=Physcomitrella patens subsp. patens |
Align length |
166 |
Score (bit) |
197.0 |
E-value |
2.0e-49 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP919895|Adiantum capillus-veneris mRNA, clone: YMU001_000130_D09. (499 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9SFY1|A9SFY1_PHYPA SNF2 superfamily chromatin remodeling pro... 197 2e-49 tr|Q6H7U1|Q6H7U1_ORYSJ Putative SNF2 domain-containing protein O... 186 5e-46 tr|A3A3E1|A3A3E1_ORYSJ Putative uncharacterized protein OS=Oryza... 186 5e-46 tr|A2X169|A2X169_ORYSI Putative uncharacterized protein OS=Oryza... 186 5e-46 tr|B5BT18|B5BT18_ARATH Homolog of human BTAF1 OS=Arabidopsis tha... 185 1e-45 tr|A7PSP4|A7PSP4_VITVI Chromosome chr6 scaffold_28, whole genome... 182 8e-45 tr|B8Q5I1|B8Q5I1_TRIMO Mot1 (Fragment) OS=Triticum monococcum PE... 181 2e-44 tr|Q9M378|Q9M378_ARATH TATA box binding protein (TBP) associated... 177 3e-43 tr|Q8BTS9|Q8BTS9_MOUSE Putative uncharacterized protein (Fragmen... 164 3e-39 tr|Q52KH4|Q52KH4_MOUSE Btaf1 protein (Fragment) OS=Mus musculus ... 164 3e-39 tr|A0ZVB6|A0ZVB6_MOUSE TBP-associated factor 170 OS=Mus musculus... 164 3e-39 tr|Q8N6J1|Q8N6J1_HUMAN BTAF1 protein (Fragment) OS=Homo sapiens ... 164 3e-39 tr|Q5VXE8|Q5VXE8_HUMAN BTAF1 RNA polymerase II, B-TFIID transcri... 164 3e-39 tr|Q59HB6|Q59HB6_HUMAN BTAF1 RNA polymerase II, B-TFIID transcri... 164 3e-39 tr|B4E0W6|B4E0W6_HUMAN cDNA FLJ54397, highly similar to TATA-bin... 164 3e-39 tr|Q00ZA8|Q00ZA8_OSTTA Putative SNF2 domain-containing protein (... 163 5e-39 tr|A4S4D1|A4S4D1_OSTLU Predicted protein OS=Ostreococcus lucimar... 162 6e-39 tr|B2AWF4|B2AWF4_PODAN Predicted CDS Pa_7_6970 OS=Podospora anse... 161 2e-38 tr|A1D445|A1D445_NEOFI TBP associated factor (Mot1), putative OS... 160 2e-38 tr|Q5B5J3|Q5B5J3_EMENI Putative uncharacterized protein OS=Emeri... 160 3e-38 tr|Q1E0N5|Q1E0N5_COCIM Putative uncharacterized protein OS=Cocci... 160 3e-38 tr|A2RAN4|A2RAN4_ASPNC Contig An18c0120, complete genome OS=Aspe... 160 3e-38 tr|Q2UUE2|Q2UUE2_ASPOR SNF2 family DNA-dependent ATPase domain-c... 160 4e-38 tr|B8NRX9|B8NRX9_ASPFL TBP associated factor (Mot1), putative OS... 160 4e-38 tr|A6QS31|A6QS31_AJECN Putative uncharacterized protein OS=Ajell... 160 4e-38 tr|Q7S1Z7|Q7S1Z7_NEUCR Putative uncharacterized protein OS=Neuro... 159 5e-38 tr|Q4WJI7|Q4WJI7_ASPFU TBP associated factor (Mot1), putative OS... 159 5e-38 tr|B8M870|B8M870_9EURO TBP associated factor (Mot1), putative OS... 159 5e-38 tr|B0XPE7|B0XPE7_ASPFC TBP associated factor (Mot1), putative OS... 159 5e-38 tr|B6Q674|B6Q674_PENMA TBP associated factor (Mot1), putative OS... 159 9e-38
>tr|A9SFY1|A9SFY1_PHYPA SNF2 superfamily chromatin remodeling protein OS=Physcomitrella patens subsp. patens GN=CHR1532 PE=4 SV=1 Length = 2041
Score = 197 bits (502), Expect = 2e-49 Identities = 108/166 (65%), Positives = 118/166 (71%) Frame = -1
Query: 499 LDGSVEPDKRFEIVKAFNSDPTIDVXXXXXXXXXXXXXXXTADTVVFMEHDWNPMRDLQA 320 LDGSVE DKRF+IVKAFNSDPTIDV ADTVVFMEHDWNPMRDLQA Sbjct: 1857 LDGSVESDKRFDIVKAFNSDPTIDVLLLTTHVGGLGLNLTAADTVVFMEHDWNPMRDLQA 1916
Query: 319 MDRAHRLGQKRVVNVHRLIMRGTLEEKVMNLQRFKISVANTVVNAENASLDKMDKGQLLD 140 MDRAHRLGQKRVVNVHRLIMRGTLEEK+M+LQRFKISVANTV+NAENASL+ MD QLLD Sbjct: 1917 MDRAHRLGQKRVVNVHRLIMRGTLEEKIMSLQRFKISVANTVINAENASLNTMDTTQLLD 1976
Query: 139 LFTMSGTGKSLTQPMLPETGEDXXXXXXXXXXXXXXXXXLNGLEDL 2 LFT+S + + M + GED LN LE+L Sbjct: 1977 LFTVSKNAQKASTSM--KAGEDESDAAASVGVNKGLKAMLNNLEEL 2020
>tr|Q6H7U1|Q6H7U1_ORYSJ Putative SNF2 domain-containing protein OS=Oryza sativa subsp. japonica GN=OJ9003_G05.21 PE=4 SV=1 Length = 2057
Score = 186 bits (472), Expect = 5e-46 Identities = 103/167 (61%), Positives = 118/167 (70%), Gaps = 1/167 (0%) Frame = -1
Query: 499 LDGSVEPDKRFEIVKAFNSDPTIDVXXXXXXXXXXXXXXXTADTVVFMEHDWNPMRDLQA 320 LDGSVEP+KRFEIVKAFNSDPTIDV +ADT+VFMEHDWNPM+DLQA Sbjct: 1872 LDGSVEPEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFMEHDWNPMKDLQA 1931
Query: 319 MDRAHRLGQKRVVNVHRLIMRGTLEEKVMNLQRFKISVANTVVNAENASLDKMDKGQLLD 140 MDRAHRLGQ++VVNVHRLIMRGTLEEKVM+LQRFK+SVAN V+NAENASL M+ QLLD Sbjct: 1932 MDRAHRLGQRKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASLKTMNTDQLLD 1991
Query: 139 LFTMSGTGKSLTQPMLP-ETGEDXXXXXXXXXXXXXXXXXLNGLEDL 2 LF + T S +LP +G D LNGL++L Sbjct: 1992 LF--ASTPASRKASVLPSSSGGDQSKDSKGKSGGKGLKSILNGLDEL 2036
>tr|A3A3E1|A3A3E1_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_005313 PE=4 SV=1 Length = 2514
Score = 186 bits (472), Expect = 5e-46 Identities = 103/167 (61%), Positives = 118/167 (70%), Gaps = 1/167 (0%) Frame = -1
Query: 499 LDGSVEPDKRFEIVKAFNSDPTIDVXXXXXXXXXXXXXXXTADTVVFMEHDWNPMRDLQA 320 LDGSVEP+KRFEIVKAFNSDPTIDV +ADT+VFMEHDWNPM+DLQA Sbjct: 2329 LDGSVEPEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFMEHDWNPMKDLQA 2388
Query: 319 MDRAHRLGQKRVVNVHRLIMRGTLEEKVMNLQRFKISVANTVVNAENASLDKMDKGQLLD 140 MDRAHRLGQ++VVNVHRLIMRGTLEEKVM+LQRFK+SVAN V+NAENASL M+ QLLD Sbjct: 2389 MDRAHRLGQRKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASLKTMNTDQLLD 2448
Query: 139 LFTMSGTGKSLTQPMLP-ETGEDXXXXXXXXXXXXXXXXXLNGLEDL 2 LF + T S +LP +G D LNGL++L Sbjct: 2449 LF--ASTPASRKASVLPSSSGGDQSKDSKGKSGGKGLKSILNGLDEL 2493
>tr|A2X169|A2X169_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_05951 PE=4 SV=1 Length = 936
Score = 186 bits (472), Expect = 5e-46 Identities = 103/167 (61%), Positives = 118/167 (70%), Gaps = 1/167 (0%) Frame = -1
Query: 499 LDGSVEPDKRFEIVKAFNSDPTIDVXXXXXXXXXXXXXXXTADTVVFMEHDWNPMRDLQA 320 LDGSVEP+KRFEIVKAFNSDPTIDV +ADT+VFMEHDWNPM+DLQA Sbjct: 751 LDGSVEPEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFMEHDWNPMKDLQA 810
Query: 319 MDRAHRLGQKRVVNVHRLIMRGTLEEKVMNLQRFKISVANTVVNAENASLDKMDKGQLLD 140 MDRAHRLGQ++VVNVHRLIMRGTLEEKVM+LQRFK+SVAN V+NAENASL M+ QLLD Sbjct: 811 MDRAHRLGQRKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASLKTMNTDQLLD 870
Query: 139 LFTMSGTGKSLTQPMLP-ETGEDXXXXXXXXXXXXXXXXXLNGLEDL 2 LF + T S +LP +G D LNGL++L Sbjct: 871 LF--ASTPASRKASVLPSSSGGDQSKDSKGKSGGKGLKSILNGLDEL 915
>tr|B5BT18|B5BT18_ARATH Homolog of human BTAF1 OS=Arabidopsis thaliana GN=AtBTAF1 PE=2 SV=1 Length = 2045
Score = 185 bits (469), Expect = 1e-45 Identities = 94/129 (72%), Positives = 104/129 (80%) Frame = -1
Query: 499 LDGSVEPDKRFEIVKAFNSDPTIDVXXXXXXXXXXXXXXXTADTVVFMEHDWNPMRDLQA 320 LDGSV P+KRFEIVKAFNSDPTIDV +ADT+VFMEHDWNPMRD QA Sbjct: 1863 LDGSVVPEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFMEHDWNPMRDHQA 1922
Query: 319 MDRAHRLGQKRVVNVHRLIMRGTLEEKVMNLQRFKISVANTVVNAENASLDKMDKGQLLD 140 MDRAHRLGQKRVVNVHRLIMRGTLEEKVM+LQ+FK+SVANTV+NAENAS+ M+ QLLD Sbjct: 1923 MDRAHRLGQKRVVNVHRLIMRGTLEEKVMSLQKFKVSVANTVINAENASMKTMNTDQLLD 1982
Query: 139 LFTMSGTGK 113 LF + T K Sbjct: 1983 LFASAETSK 1991
>tr|A7PSP4|A7PSP4_VITVI Chromosome chr6 scaffold_28, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00023017001 PE=4 SV=1 Length = 1592
Score = 182 bits (462), Expect = 8e-45 Identities = 91/123 (73%), Positives = 103/123 (83%) Frame = -1
Query: 499 LDGSVEPDKRFEIVKAFNSDPTIDVXXXXXXXXXXXXXXXTADTVVFMEHDWNPMRDLQA 320 LDGSVEP+KRFEIVKAFNSDPTIDV +ADT+VFMEHDWNPMRD QA Sbjct: 1407 LDGSVEPEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFMEHDWNPMRDHQA 1466
Query: 319 MDRAHRLGQKRVVNVHRLIMRGTLEEKVMNLQRFKISVANTVVNAENASLDKMDKGQLLD 140 MDRAHRLGQ++VVNVHRLIMRGTLEEKVM+LQRFK+SVAN+V+N+ENAS+ M+ QLLD Sbjct: 1467 MDRAHRLGQRKVVNVHRLIMRGTLEEKVMSLQRFKLSVANSVINSENASMKTMNTDQLLD 1526
Query: 139 LFT 131 LFT Sbjct: 1527 LFT 1529
>tr|B8Q5I1|B8Q5I1_TRIMO Mot1 (Fragment) OS=Triticum monococcum PE=4 SV=1 Length = 179
Score = 181 bits (458), Expect = 2e-44 Identities = 94/139 (67%), Positives = 107/139 (76%) Frame = -1
Query: 499 LDGSVEPDKRFEIVKAFNSDPTIDVXXXXXXXXXXXXXXXTADTVVFMEHDWNPMRDLQA 320 LDGSV+ DKRFEIVK FNSDPTIDV +ADT+VFMEHDWNPM+DLQA Sbjct: 13 LDGSVQTDKRFEIVKTFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFMEHDWNPMKDLQA 72
Query: 319 MDRAHRLGQKRVVNVHRLIMRGTLEEKVMNLQRFKISVANTVVNAENASLDKMDKGQLLD 140 MDRAHRLGQ++VVNVHRLIMRGTLEEKVM+LQRFK+SVAN V+N+ENASL M+ QLLD Sbjct: 73 MDRAHRLGQRKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINSENASLKTMNTDQLLD 132
Query: 139 LFTMSGTGKSLTQPMLPET 83 LFT T S +LP + Sbjct: 133 LFT--STPASRKASVLPSS 149
>tr|Q9M378|Q9M378_ARATH TATA box binding protein (TBP) associated factor (TAF)-like protein OS=Arabidopsis thaliana GN=F24B22.240 PE=4 SV=1 Length = 2049
Score = 177 bits (448), Expect = 3e-43 Identities = 94/140 (67%), Positives = 104/140 (74%), Gaps = 11/140 (7%) Frame = -1
Query: 499 LDGSVEPDKRFEIVKAFNSDPTIDVXXXXXXXXXXXXXXXTADTVVFMEHDWNPMRD--- 329 LDGSV P+KRFEIVKAFNSDPTIDV +ADT+VFMEHDWNPMRD Sbjct: 1856 LDGSVVPEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFMEHDWNPMRDHQF 1915
Query: 328 --------LQAMDRAHRLGQKRVVNVHRLIMRGTLEEKVMNLQRFKISVANTVVNAENAS 173 QAMDRAHRLGQKRVVNVHRLIMRGTLEEKVM+LQ+FK+SVANTV+NAENAS Sbjct: 1916 ANIELNKLWQAMDRAHRLGQKRVVNVHRLIMRGTLEEKVMSLQKFKVSVANTVINAENAS 1975
Query: 172 LDKMDKGQLLDLFTMSGTGK 113 + M+ QLLDLF + T K Sbjct: 1976 MKTMNTDQLLDLFASAETSK 1995
>tr|Q8BTS9|Q8BTS9_MOUSE Putative uncharacterized protein (Fragment) OS=Mus musculus GN=Btaf1 PE=2 SV=1 Length = 594
Score = 164 bits (414), Expect = 3e-39 Identities = 80/130 (61%), Positives = 97/130 (74%) Frame = -1
Query: 499 LDGSVEPDKRFEIVKAFNSDPTIDVXXXXXXXXXXXXXXXTADTVVFMEHDWNPMRDLQA 320 LDGS+ P +R IV FN+DP+IDV ADTVVF+EHDWNPMRDLQA Sbjct: 422 LDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQA 481
Query: 319 MDRAHRLGQKRVVNVHRLIMRGTLEEKVMNLQRFKISVANTVVNAENASLDKMDKGQLLD 140 MDRAHR+GQKRVVNV+RLI RGTLEEK+M LQ+FK+++ANTV++ EN+SL M QLLD Sbjct: 482 MDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLD 541
Query: 139 LFTMSGTGKS 110 LFT+ GK+ Sbjct: 542 LFTLDKDGKA 551
>tr|Q52KH4|Q52KH4_MOUSE Btaf1 protein (Fragment) OS=Mus musculus GN=Btaf1 PE=2 SV=1 Length = 990
Score = 164 bits (414), Expect = 3e-39 Identities = 80/130 (61%), Positives = 97/130 (74%) Frame = -1
Query: 499 LDGSVEPDKRFEIVKAFNSDPTIDVXXXXXXXXXXXXXXXTADTVVFMEHDWNPMRDLQA 320 LDGS+ P +R IV FN+DP+IDV ADTVVF+EHDWNPMRDLQA Sbjct: 818 LDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQA 877
Query: 319 MDRAHRLGQKRVVNVHRLIMRGTLEEKVMNLQRFKISVANTVVNAENASLDKMDKGQLLD 140 MDRAHR+GQKRVVNV+RLI RGTLEEK+M LQ+FK+++ANTV++ EN+SL M QLLD Sbjct: 878 MDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLD 937
Query: 139 LFTMSGTGKS 110 LFT+ GK+ Sbjct: 938 LFTLDKDGKA 947
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