BP919900 |
Clone id |
YMU001_000130_E03 |
Library |
YMU01 |
Length |
401 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000130_E03. |
Accession |
BP919900 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
CTTAAAGATTTCCATTAAAAATGACTCGTTTTATACATGTAATCCTGACGACTTTACAAT TGCCAAGGTCTTTTCTTTGAGCTCCTATTTCCGCTCACTCTCAGACGTGTTGCATATATA TGTCCTTTACAGTAAACAAACATGTGTCAAACATCCAAATAAGAAATGAATGTTCATTGG GATAGAATGAGTGGGAAGACGAACTCTAGAGACTTTATTCATGCCGAAAATCGCACGCTT GACCCTTTTTACAAAGGCCCCTTGAGTAATATTTGCAGAAAAGATCCTTTTTGGGCAAAA ATCTGCCATCACTACCCTGAAAATGGTCAGAACCTCTAAAATTTTGCGAGCGATCAAACT GTCCTCGGTTATGTGCATCCCGATTGTCATGACGAGATGCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9UTD1 |
Definition |
sp|Q9UTD1|YTH1_SCHPO mRNA 3'-end-processing protein yth1 OS=Schizosaccharomyces pombe |
Align length |
56 |
Score (bit) |
41.6 |
E-value |
0.001 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP919900|Adiantum capillus-veneris mRNA, clone: YMU001_000130_E03. (401 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9UTD1|YTH1_SCHPO mRNA 3'-end-processing protein yth1 OS=Schi... 42 0.001 sp|Q7SGR2|YTH1_NEUCR mRNA 3'-end-processing protein yth-1 OS=Neu... 41 0.002 sp|Q66KE3|CPSF4_XENTR Cleavage and polyadenylation specificity f... 40 0.005 sp|Q6DJP7|CPSF4_XENLA Cleavage and polyadenylation specificity f... 40 0.005 sp|Q5FVR7|CPSF4_RAT Cleavage and polyadenylation specificity fac... 40 0.005 sp|Q8BQZ5|CPSF4_MOUSE Cleavage and polyadenylation specificity f... 40 0.005 sp|O95639|CPSF4_HUMAN Cleavage and polyadenylation specificity f... 40 0.005 sp|O19137|CPSF4_BOVIN Cleavage and polyadenylation specificity f... 40 0.005 sp|Q4P384|YTH1_USTMA mRNA 3'-end-processing protein YTH1 OS=Usti... 39 0.010 sp|Q4IPA4|YTH1_GIBZE mRNA 3'-end-processing protein YTH1 OS=Gibb... 38 0.014 sp|Q59T36|YTH1_CANAL mRNA 3'-end-processing protein YTH1 OS=Cand... 38 0.018 sp|Q6C922|YTH1_YARLI mRNA 3'-end-processing protein YTH1 OS=Yarr... 37 0.030 sp|Q6FTL0|YTH1_CANGA mRNA 3'-end-processing protein YTH1 OS=Cand... 37 0.040 sp|A6NMK7|CPS4L_HUMAN Putative cleavage and polyadenylation spec... 36 0.052 sp|Q5BGN2|YTH1_EMENI mRNA 3'-end-processing protein yth1 OS=Emer... 36 0.068 sp|Q8BYK8|ZC3H6_MOUSE Zinc finger CCCH domain-containing protein... 35 0.088 sp|Q6BTT1|YTH1_DEBHA mRNA 3'-end-processing protein YTH1 OS=Deba... 35 0.088 sp|Q6C007|CWC2_YARLI Pre-mRNA-splicing factor CWC2 OS=Yarrowia l... 35 0.088 sp|Q2URI6|YTH1_ASPOR mRNA 3'-end-processing protein yth1 OS=Aspe... 35 0.12 sp|Q4WKD9|YTH1_ASPFU mRNA 3'-end-processing protein yth1 OS=Aspe... 35 0.12 sp|Q6ZPZ3|ZC3H4_MOUSE Zinc finger CCCH domain-containing protein... 34 0.26 sp|Q9UPT8|ZC3H4_HUMAN Zinc finger CCCH domain-containing protein... 34 0.26 sp|Q13434|MKRN4_HUMAN Putative makorin-4 OS=Homo sapiens GN=MKRN... 34 0.26 sp|Q6CKU1|YTH1_KLULA mRNA 3'-end-processing protein YTH1 OS=Kluy... 33 0.34 sp|Q758T3|YTH1_ASHGO mRNA 3'-end-processing protein YTH1 OS=Ashb... 33 0.34 sp|Q0DA50|C3H45_ORYSJ Zinc finger CCCH domain-containing protein... 33 0.34 sp|Q5ZA07|C3H41_ORYSJ Zinc finger CCCH domain-containing protein... 33 0.34 sp|Q5KMN5|YTH1_CRYNE mRNA 3'-end-processing protein YTH1 OS=Cryp... 33 0.44 sp|Q13064|MKRN3_HUMAN Makorin-3 OS=Homo sapiens GN=MKRN3 PE=1 SV=1 33 0.44 sp|Q51TF7|CWC2_MAGGR Pre-mRNA-splicing factor CWC2 OS=Magnaporth... 33 0.44
>sp|Q9UTD1|YTH1_SCHPO mRNA 3'-end-processing protein yth1 OS=Schizosaccharomyces pombe GN=yth1 PE=2 SV=1 Length = 170
Score = 41.6 bits (96), Expect = 0.001 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Frame = -2
Query: 343 NFRGSDHFQGSDGRFLPKK--DLFCKYYSRGLCKKGQACDFRHEXXXXXXXXXSFY 182 NF S +GR K + CK++ RGLCKKG+ CDF HE FY Sbjct: 30 NFGRSALLNSGNGRDSGSKMGSVVCKHWLRGLCKKGEQCDFLHEYNLKKMPPCHFY 85
>sp|Q7SGR2|YTH1_NEUCR mRNA 3'-end-processing protein yth-1 OS=Neurospora crassa GN=yth-1 PE=3 SV=1 Length = 317
Score = 41.2 bits (95), Expect = 0.002 Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Frame = -2
Query: 349 SQNFRGSDH-FQGSDGRFLPKKDLFCKYYSRGLCKKGQACDFRHE 218 SQN G + F G G L CK++ RGLCKKG++C+F HE Sbjct: 80 SQNTHGGGNTFSGGFG------SLVCKHWLRGLCKKGESCEFLHE 118
>sp|Q66KE3|CPSF4_XENTR Cleavage and polyadenylation specificity factor subunit 4 OS=Xenopus tropicalis GN=cpsf4 PE=2 SV=1 Length = 269
Score = 39.7 bits (91), Expect = 0.005 Identities = 16/37 (43%), Positives = 21/37 (56%) Frame = -2
Query: 292 KKDLFCKYYSRGLCKKGQACDFRHEXXXXXXXXXSFY 182 +K + CK++ RGLCKKG C+F HE FY Sbjct: 63 EKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFY 99
Score = 29.3 bits (64), Expect = 6.3 Identities = 10/19 (52%), Positives = 11/19 (57%) Frame = -2
Query: 277 CKYYSRGLCKKGQACDFRH 221 C +Y RG CK G C RH Sbjct: 124 CPWYDRGFCKHGPLCRHRH 142
>sp|Q6DJP7|CPSF4_XENLA Cleavage and polyadenylation specificity factor subunit 4 OS=Xenopus laevis GN=cpsf4 PE=2 SV=1 Length = 269
Score = 39.7 bits (91), Expect = 0.005 Identities = 16/37 (43%), Positives = 21/37 (56%) Frame = -2
Query: 292 KKDLFCKYYSRGLCKKGQACDFRHEXXXXXXXXXSFY 182 +K + CK++ RGLCKKG C+F HE FY Sbjct: 63 EKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFY 99
Score = 29.3 bits (64), Expect = 6.3 Identities = 10/19 (52%), Positives = 11/19 (57%) Frame = -2
Query: 277 CKYYSRGLCKKGQACDFRH 221 C +Y RG CK G C RH Sbjct: 124 CPWYDRGFCKHGPLCRHRH 142
>sp|Q5FVR7|CPSF4_RAT Cleavage and polyadenylation specificity factor subunit 4 OS=Rattus norvegicus GN=Cpsf4 PE=2 SV=1 Length = 243
Score = 39.7 bits (91), Expect = 0.005 Identities = 16/37 (43%), Positives = 21/37 (56%) Frame = -2
Query: 292 KKDLFCKYYSRGLCKKGQACDFRHEXXXXXXXXXSFY 182 +K + CK++ RGLCKKG C+F HE FY Sbjct: 63 EKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFY 99
Score = 29.3 bits (64), Expect = 6.3 Identities = 10/19 (52%), Positives = 11/19 (57%) Frame = -2
Query: 277 CKYYSRGLCKKGQACDFRH 221 C +Y RG CK G C RH Sbjct: 124 CPWYDRGFCKHGPLCRHRH 142
>sp|Q8BQZ5|CPSF4_MOUSE Cleavage and polyadenylation specificity factor subunit 4 OS=Mus musculus GN=Cpsf4 PE=2 SV=1 Length = 211
Score = 39.7 bits (91), Expect = 0.005 Identities = 16/37 (43%), Positives = 21/37 (56%) Frame = -2
Query: 292 KKDLFCKYYSRGLCKKGQACDFRHEXXXXXXXXXSFY 182 +K + CK++ RGLCKKG C+F HE FY Sbjct: 63 EKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFY 99
>sp|O95639|CPSF4_HUMAN Cleavage and polyadenylation specificity factor subunit 4 OS=Homo sapiens GN=CPSF4 PE=1 SV=1 Length = 269
Score = 39.7 bits (91), Expect = 0.005 Identities = 16/37 (43%), Positives = 21/37 (56%) Frame = -2
Query: 292 KKDLFCKYYSRGLCKKGQACDFRHEXXXXXXXXXSFY 182 +K + CK++ RGLCKKG C+F HE FY Sbjct: 63 EKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFY 99
Score = 29.3 bits (64), Expect = 6.3 Identities = 10/19 (52%), Positives = 11/19 (57%) Frame = -2
Query: 277 CKYYSRGLCKKGQACDFRH 221 C +Y RG CK G C RH Sbjct: 124 CPWYDRGFCKHGPLCRHRH 142
>sp|O19137|CPSF4_BOVIN Cleavage and polyadenylation specificity factor subunit 4 OS=Bos taurus GN=CPSF4 PE=2 SV=1 Length = 243
Score = 39.7 bits (91), Expect = 0.005 Identities = 16/37 (43%), Positives = 21/37 (56%) Frame = -2
Query: 292 KKDLFCKYYSRGLCKKGQACDFRHEXXXXXXXXXSFY 182 +K + CK++ RGLCKKG C+F HE FY Sbjct: 63 EKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFY 99
Score = 29.3 bits (64), Expect = 6.3 Identities = 10/19 (52%), Positives = 11/19 (57%) Frame = -2
Query: 277 CKYYSRGLCKKGQACDFRH 221 C +Y RG CK G C RH Sbjct: 124 CPWYDRGFCKHGPLCRHRH 142
>sp|Q4P384|YTH1_USTMA mRNA 3'-end-processing protein YTH1 OS=Ustilago maydis GN=YTH1 PE=3 SV=1 Length = 366
Score = 38.5 bits (88), Expect = 0.010 Identities = 16/38 (42%), Positives = 19/38 (50%) Frame = -2
Query: 295 PKKDLFCKYYSRGLCKKGQACDFRHEXXXXXXXXXSFY 182 P K CK++ RGLCKK CD+ HE FY Sbjct: 104 PNKRTVCKHWLRGLCKKDDQCDYLHEYDMRRIPECRFY 141
>sp|Q4IPA4|YTH1_GIBZE mRNA 3'-end-processing protein YTH1 OS=Gibberella zeae GN=YTH1 PE=3 SV=1 Length = 411
Score = 38.1 bits (87), Expect = 0.014 Identities = 14/22 (63%), Positives = 18/22 (81%) Frame = -2
Query: 283 LFCKYYSRGLCKKGQACDFRHE 218 L CK++ RGLCKKG+ C+F HE Sbjct: 233 LVCKHWLRGLCKKGEHCEFLHE 254
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q9SD34 |
Definition |
tr|Q9SD34|Q9SD34_ARATH Putative uncharacterized protein F24M12.160 OS=Arabidopsis thaliana |
Align length |
53 |
Score (bit) |
44.7 |
E-value |
0.002 |
Report |
|