BP919900
Clone id YMU001_000130_E03
Library
Length 401
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000130_E03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CTTAAAGATTTCCATTAAAAATGACTCGTTTTATACATGTAATCCTGACGACTTTACAAT
TGCCAAGGTCTTTTCTTTGAGCTCCTATTTCCGCTCACTCTCAGACGTGTTGCATATATA
TGTCCTTTACAGTAAACAAACATGTGTCAAACATCCAAATAAGAAATGAATGTTCATTGG
GATAGAATGAGTGGGAAGACGAACTCTAGAGACTTTATTCATGCCGAAAATCGCACGCTT
GACCCTTTTTACAAAGGCCCCTTGAGTAATATTTGCAGAAAAGATCCTTTTTGGGCAAAA
ATCTGCCATCACTACCCTGAAAATGGTCAGAACCTCTAAAATTTTGCGAGCGATCAAACT
GTCCTCGGTTATGTGCATCCCGATTGTCATGACGAGATGCA
■■Homology search results ■■ -
sp_hit_id Q9UTD1
Definition sp|Q9UTD1|YTH1_SCHPO mRNA 3'-end-processing protein yth1 OS=Schizosaccharomyces pombe
Align length 56
Score (bit) 41.6
E-value 0.001
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919900|Adiantum capillus-veneris mRNA, clone:
YMU001_000130_E03.
(401 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9UTD1|YTH1_SCHPO mRNA 3'-end-processing protein yth1 OS=Schi... 42 0.001
sp|Q7SGR2|YTH1_NEUCR mRNA 3'-end-processing protein yth-1 OS=Neu... 41 0.002
sp|Q66KE3|CPSF4_XENTR Cleavage and polyadenylation specificity f... 40 0.005
sp|Q6DJP7|CPSF4_XENLA Cleavage and polyadenylation specificity f... 40 0.005
sp|Q5FVR7|CPSF4_RAT Cleavage and polyadenylation specificity fac... 40 0.005
sp|Q8BQZ5|CPSF4_MOUSE Cleavage and polyadenylation specificity f... 40 0.005
sp|O95639|CPSF4_HUMAN Cleavage and polyadenylation specificity f... 40 0.005
sp|O19137|CPSF4_BOVIN Cleavage and polyadenylation specificity f... 40 0.005
sp|Q4P384|YTH1_USTMA mRNA 3'-end-processing protein YTH1 OS=Usti... 39 0.010
sp|Q4IPA4|YTH1_GIBZE mRNA 3'-end-processing protein YTH1 OS=Gibb... 38 0.014
sp|Q59T36|YTH1_CANAL mRNA 3'-end-processing protein YTH1 OS=Cand... 38 0.018
sp|Q6C922|YTH1_YARLI mRNA 3'-end-processing protein YTH1 OS=Yarr... 37 0.030
sp|Q6FTL0|YTH1_CANGA mRNA 3'-end-processing protein YTH1 OS=Cand... 37 0.040
sp|A6NMK7|CPS4L_HUMAN Putative cleavage and polyadenylation spec... 36 0.052
sp|Q5BGN2|YTH1_EMENI mRNA 3'-end-processing protein yth1 OS=Emer... 36 0.068
sp|Q8BYK8|ZC3H6_MOUSE Zinc finger CCCH domain-containing protein... 35 0.088
sp|Q6BTT1|YTH1_DEBHA mRNA 3'-end-processing protein YTH1 OS=Deba... 35 0.088
sp|Q6C007|CWC2_YARLI Pre-mRNA-splicing factor CWC2 OS=Yarrowia l... 35 0.088
sp|Q2URI6|YTH1_ASPOR mRNA 3'-end-processing protein yth1 OS=Aspe... 35 0.12
sp|Q4WKD9|YTH1_ASPFU mRNA 3'-end-processing protein yth1 OS=Aspe... 35 0.12
sp|Q6ZPZ3|ZC3H4_MOUSE Zinc finger CCCH domain-containing protein... 34 0.26
sp|Q9UPT8|ZC3H4_HUMAN Zinc finger CCCH domain-containing protein... 34 0.26
sp|Q13434|MKRN4_HUMAN Putative makorin-4 OS=Homo sapiens GN=MKRN... 34 0.26
sp|Q6CKU1|YTH1_KLULA mRNA 3'-end-processing protein YTH1 OS=Kluy... 33 0.34
sp|Q758T3|YTH1_ASHGO mRNA 3'-end-processing protein YTH1 OS=Ashb... 33 0.34
sp|Q0DA50|C3H45_ORYSJ Zinc finger CCCH domain-containing protein... 33 0.34
sp|Q5ZA07|C3H41_ORYSJ Zinc finger CCCH domain-containing protein... 33 0.34
sp|Q5KMN5|YTH1_CRYNE mRNA 3'-end-processing protein YTH1 OS=Cryp... 33 0.44
sp|Q13064|MKRN3_HUMAN Makorin-3 OS=Homo sapiens GN=MKRN3 PE=1 SV=1 33 0.44
sp|Q51TF7|CWC2_MAGGR Pre-mRNA-splicing factor CWC2 OS=Magnaporth... 33 0.44

>sp|Q9UTD1|YTH1_SCHPO mRNA 3'-end-processing protein yth1
OS=Schizosaccharomyces pombe GN=yth1 PE=2 SV=1
Length = 170

Score = 41.6 bits (96), Expect = 0.001
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -2

Query: 343 NFRGSDHFQGSDGRFLPKK--DLFCKYYSRGLCKKGQACDFRHEXXXXXXXXXSFY 182
NF S +GR K + CK++ RGLCKKG+ CDF HE FY
Sbjct: 30 NFGRSALLNSGNGRDSGSKMGSVVCKHWLRGLCKKGEQCDFLHEYNLKKMPPCHFY 85


>sp|Q7SGR2|YTH1_NEUCR mRNA 3'-end-processing protein yth-1
OS=Neurospora crassa GN=yth-1 PE=3 SV=1
Length = 317

Score = 41.2 bits (95), Expect = 0.002
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = -2

Query: 349 SQNFRGSDH-FQGSDGRFLPKKDLFCKYYSRGLCKKGQACDFRHE 218
SQN G + F G G L CK++ RGLCKKG++C+F HE
Sbjct: 80 SQNTHGGGNTFSGGFG------SLVCKHWLRGLCKKGESCEFLHE 118


>sp|Q66KE3|CPSF4_XENTR Cleavage and polyadenylation specificity
factor subunit 4 OS=Xenopus tropicalis GN=cpsf4 PE=2
SV=1
Length = 269

Score = 39.7 bits (91), Expect = 0.005
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -2

Query: 292 KKDLFCKYYSRGLCKKGQACDFRHEXXXXXXXXXSFY 182
+K + CK++ RGLCKKG C+F HE FY
Sbjct: 63 EKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFY 99



Score = 29.3 bits (64), Expect = 6.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2

Query: 277 CKYYSRGLCKKGQACDFRH 221
C +Y RG CK G C RH
Sbjct: 124 CPWYDRGFCKHGPLCRHRH 142


>sp|Q6DJP7|CPSF4_XENLA Cleavage and polyadenylation specificity
factor subunit 4 OS=Xenopus laevis GN=cpsf4 PE=2 SV=1
Length = 269

Score = 39.7 bits (91), Expect = 0.005
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -2

Query: 292 KKDLFCKYYSRGLCKKGQACDFRHEXXXXXXXXXSFY 182
+K + CK++ RGLCKKG C+F HE FY
Sbjct: 63 EKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFY 99



Score = 29.3 bits (64), Expect = 6.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2

Query: 277 CKYYSRGLCKKGQACDFRH 221
C +Y RG CK G C RH
Sbjct: 124 CPWYDRGFCKHGPLCRHRH 142


>sp|Q5FVR7|CPSF4_RAT Cleavage and polyadenylation specificity factor
subunit 4 OS=Rattus norvegicus GN=Cpsf4 PE=2 SV=1
Length = 243

Score = 39.7 bits (91), Expect = 0.005
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -2

Query: 292 KKDLFCKYYSRGLCKKGQACDFRHEXXXXXXXXXSFY 182
+K + CK++ RGLCKKG C+F HE FY
Sbjct: 63 EKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFY 99



Score = 29.3 bits (64), Expect = 6.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2

Query: 277 CKYYSRGLCKKGQACDFRH 221
C +Y RG CK G C RH
Sbjct: 124 CPWYDRGFCKHGPLCRHRH 142


>sp|Q8BQZ5|CPSF4_MOUSE Cleavage and polyadenylation specificity
factor subunit 4 OS=Mus musculus GN=Cpsf4 PE=2 SV=1
Length = 211

Score = 39.7 bits (91), Expect = 0.005
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -2

Query: 292 KKDLFCKYYSRGLCKKGQACDFRHEXXXXXXXXXSFY 182
+K + CK++ RGLCKKG C+F HE FY
Sbjct: 63 EKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFY 99


>sp|O95639|CPSF4_HUMAN Cleavage and polyadenylation specificity
factor subunit 4 OS=Homo sapiens GN=CPSF4 PE=1 SV=1
Length = 269

Score = 39.7 bits (91), Expect = 0.005
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -2

Query: 292 KKDLFCKYYSRGLCKKGQACDFRHEXXXXXXXXXSFY 182
+K + CK++ RGLCKKG C+F HE FY
Sbjct: 63 EKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFY 99



Score = 29.3 bits (64), Expect = 6.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2

Query: 277 CKYYSRGLCKKGQACDFRH 221
C +Y RG CK G C RH
Sbjct: 124 CPWYDRGFCKHGPLCRHRH 142


>sp|O19137|CPSF4_BOVIN Cleavage and polyadenylation specificity
factor subunit 4 OS=Bos taurus GN=CPSF4 PE=2 SV=1
Length = 243

Score = 39.7 bits (91), Expect = 0.005
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -2

Query: 292 KKDLFCKYYSRGLCKKGQACDFRHEXXXXXXXXXSFY 182
+K + CK++ RGLCKKG C+F HE FY
Sbjct: 63 EKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFY 99



Score = 29.3 bits (64), Expect = 6.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2

Query: 277 CKYYSRGLCKKGQACDFRH 221
C +Y RG CK G C RH
Sbjct: 124 CPWYDRGFCKHGPLCRHRH 142


>sp|Q4P384|YTH1_USTMA mRNA 3'-end-processing protein YTH1
OS=Ustilago maydis GN=YTH1 PE=3 SV=1
Length = 366

Score = 38.5 bits (88), Expect = 0.010
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -2

Query: 295 PKKDLFCKYYSRGLCKKGQACDFRHEXXXXXXXXXSFY 182
P K CK++ RGLCKK CD+ HE FY
Sbjct: 104 PNKRTVCKHWLRGLCKKDDQCDYLHEYDMRRIPECRFY 141


>sp|Q4IPA4|YTH1_GIBZE mRNA 3'-end-processing protein YTH1
OS=Gibberella zeae GN=YTH1 PE=3 SV=1
Length = 411

Score = 38.1 bits (87), Expect = 0.014
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = -2

Query: 283 LFCKYYSRGLCKKGQACDFRHE 218
L CK++ RGLCKKG+ C+F HE
Sbjct: 233 LVCKHWLRGLCKKGEHCEFLHE 254


tr_hit_id Q9SD34
Definition tr|Q9SD34|Q9SD34_ARATH Putative uncharacterized protein F24M12.160 OS=Arabidopsis thaliana
Align length 53
Score (bit) 44.7
E-value 0.002
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919900|Adiantum capillus-veneris mRNA, clone:
YMU001_000130_E03.
(401 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q9SD34|Q9SD34_ARATH Putative uncharacterized protein F24M12.1... 45 0.002
tr|B6JVW0|B6JVW0_SCHJP Zinc finger protein Yth1 OS=Schizosacchar... 40 0.044
tr|B8BHV0|B8BHV0_ORYSI Putative uncharacterized protein OS=Oryza... 40 0.057
tr|B6MHM6|B6MHM6_BRAFL Putative uncharacterized protein OS=Branc... 40 0.057
tr|B6LAK0|B6LAK0_BRAFL Putative uncharacterized protein OS=Branc... 40 0.057
tr|A5DUI3|A5DUI3_LODEL Protein YTH1 OS=Lodderomyces elongisporus... 40 0.057
tr|Q9I904|Q9I904_DANRE No arches (Fragment) OS=Danio rerio GN=na... 40 0.075
tr|Q98881|Q98881_DANRE No arches OS=Danio rerio GN=nar PE=2 SV=1 40 0.075
tr|Q4SVP0|Q4SVP0_TETNG Chromosome undetermined SCAF13749, whole ... 40 0.075
tr|Q28FZ4|Q28FZ4_XENTR Novel protein similar to cpsf4 OS=Xenopus... 40 0.075
tr|Q28DB2|Q28DB2_XENTR Novel protein similar to cpsf4 OS=Xenopus... 40 0.075
tr|Q9QYU6|Q9QYU6_RAT Zinc finger protein (Fragment) OS=Rattus no... 40 0.075
tr|B2LVG6|B2LVG6_MOUSE Cleavage and polyadenylation specific fac... 40 0.075
tr|B2LVG5|B2LVG5_MOUSE Cleavage and polyadenylation specific fac... 40 0.075
tr|B7Z7B0|B7Z7B0_HUMAN cDNA FLJ52791, highly similar to Cleavage... 40 0.075
tr|Q0UU43|Q0UU43_PHANO Putative uncharacterized protein OS=Phaeo... 40 0.075
tr|B2WC08|B2WC08_PYRTR mRNA 3'-end-processing protein yth1 OS=Py... 40 0.075
tr|B3RPS1|B3RPS1_TRIAD Putative uncharacterized protein OS=Trich... 39 0.098
tr|B2B7W8|B2B7W8_PODAN Predicted CDS Pa_2_12510 OS=Podospora ans... 39 0.098
tr|A4REF9|A4REF9_MAGGR Putative uncharacterized protein OS=Magna... 39 0.098
tr|Q4RAC4|Q4RAC4_TETNG Chromosome undetermined SCAF24031, whole ... 39 0.17
tr|B8BVX8|B8BVX8_THAPS Predicted protein OS=Thalassiosira pseudo... 39 0.17
tr|Q9VPT8|Q9VPT8_DROME Clipper OS=Drosophila melanogaster GN=Clp... 39 0.17
tr|Q24081|Q24081_DROME Zinc finger protein OS=Drosophila melanog... 39 0.17
tr|A7S8B4|A7S8B4_NEMVE Predicted protein (Fragment) OS=Nematoste... 39 0.17
tr|A0JQ42|A0JQ42_DROME IP02511p (Fragment) OS=Drosophila melanog... 39 0.17
tr|B8P5C2|B8P5C2_9APHY Predicted protein (Fragment) OS=Postia pl... 39 0.17
tr|B0CQ84|B0CQ84_LACBS Predicted protein OS=Laccaria bicolor (st... 39 0.17
tr|A7EKP8|A7EKP8_SCLS1 Putative uncharacterized protein OS=Scler... 39 0.17
tr|A6RMC4|A6RMC4_BOTFB Putative uncharacterized protein OS=Botry... 39 0.17

>tr|Q9SD34|Q9SD34_ARATH Putative uncharacterized protein F24M12.160
OS=Arabidopsis thaliana GN=F24M12.160 PE=4 SV=1
Length = 1247

Score = 44.7 bits (104), Expect = 0.002
Identities = 22/53 (41%), Positives = 28/53 (52%)
Frame = -2

Query: 379 DAHNRGQFDRSQNFRGSDHFQGSDGRFLPKKDLFCKYYSRGLCKKGQACDFRH 221
++HN Q+ S N G DH GS PK CK+Y G CK+G +C F H
Sbjct: 1195 NSHNNRQWPYS-NSHGYDHGSGSYAAHPPKGLKICKFYESGYCKRGASCSFWH 1246


>tr|B6JVW0|B6JVW0_SCHJP Zinc finger protein Yth1
OS=Schizosaccharomyces japonicus yFS275 GN=SJAG_00527
PE=4 SV=1
Length = 171

Score = 40.4 bits (93), Expect = 0.044
Identities = 25/71 (35%), Positives = 31/71 (43%)
Frame = -2

Query: 394 RHDNRDAHNRGQFDRSQNFRGSDHFQGSDGRFLPKKDLFCKYYSRGLCKKGQACDFRHEX 215
RH D R +D QN R + GS + CK++ RGLCKKG C+F HE
Sbjct: 27 RHHQFDYSAR--YDAHQNARENGSKMGS---------VVCKHWLRGLCKKGNQCEFLHEY 75

Query: 214 XXXXXXXXSFY 182
FY
Sbjct: 76 NLKKMPPCHFY 86


>tr|B8BHV0|B8BHV0_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_34293 PE=4 SV=1
Length = 1681

Score = 40.0 bits (92), Expect = 0.057
Identities = 21/58 (36%), Positives = 26/58 (44%)
Frame = -2

Query: 394 RHDNRDAHNRGQFDRSQNFRGSDHFQGSDGRFLPKKDLFCKYYSRGLCKKGQACDFRH 221
R D+R H G RS + RG Q G C+YY G C+KG +C F H
Sbjct: 1635 RSDHRQEHGNGGSSRSSSSRG----QSQRG--------ICRYYENGYCRKGTSCQFLH 1680


>tr|B6MHM6|B6MHM6_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_123167 PE=4 SV=1
Length = 300

Score = 40.0 bits (92), Expect = 0.057
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -2

Query: 292 KKDLFCKYYSRGLCKKGQACDFRHEXXXXXXXXXSFY 182
+K + CK++ RGLCKKG C+F HE FY
Sbjct: 63 EKSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFY 99


>tr|B6LAK0|B6LAK0_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_118661 PE=4 SV=1
Length = 300

Score = 40.0 bits (92), Expect = 0.057
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -2

Query: 292 KKDLFCKYYSRGLCKKGQACDFRHEXXXXXXXXXSFY 182
+K + CK++ RGLCKKG C+F HE FY
Sbjct: 63 EKSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFY 99


>tr|A5DUI3|A5DUI3_LODEL Protein YTH1 OS=Lodderomyces elongisporus
GN=LELG_01019 PE=4 SV=1
Length = 211

Score = 40.0 bits (92), Expect = 0.057
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -2

Query: 292 KKDLFCKYYSRGLCKKGQACDFRHEXXXXXXXXXSFY 182
K L CK++ RGLCKKG C+F HE FY
Sbjct: 66 KNKLVCKHWLRGLCKKGDNCEFLHEYNLRKMPECVFY 102


>tr|Q9I904|Q9I904_DANRE No arches (Fragment) OS=Danio rerio GN=nar
PE=2 SV=1
Length = 190

Score = 39.7 bits (91), Expect = 0.075
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -2

Query: 292 KKDLFCKYYSRGLCKKGQACDFRHEXXXXXXXXXSFY 182
+K + CK++ RGLCKKG C+F HE FY
Sbjct: 63 EKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFY 99


>tr|Q98881|Q98881_DANRE No arches OS=Danio rerio GN=nar PE=2 SV=1
Length = 271

Score = 39.7 bits (91), Expect = 0.075
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -2

Query: 292 KKDLFCKYYSRGLCKKGQACDFRHEXXXXXXXXXSFY 182
+K + CK++ RGLCKKG C+F HE FY
Sbjct: 63 EKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFY 99


>tr|Q4SVP0|Q4SVP0_TETNG Chromosome undetermined SCAF13749, whole
genome shotgun sequence. (Fragment) OS=Tetraodon
nigroviridis GN=GSTENG00011892001 PE=4 SV=1
Length = 291

Score = 39.7 bits (91), Expect = 0.075
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -2

Query: 292 KKDLFCKYYSRGLCKKGQACDFRHEXXXXXXXXXSFY 182
+K + CK++ RGLCKKG C+F HE FY
Sbjct: 63 EKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFY 99


>tr|Q28FZ4|Q28FZ4_XENTR Novel protein similar to cpsf4 OS=Xenopus
tropicalis GN=TGas053l04.1-001 PE=2 SV=1
Length = 279

Score = 39.7 bits (91), Expect = 0.075
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -2

Query: 292 KKDLFCKYYSRGLCKKGQACDFRHEXXXXXXXXXSFY 182
+K + CK++ RGLCKKG C+F HE FY
Sbjct: 63 EKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFY 99