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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919901
Clone id YMU001_000130_E04
Library
Length 395
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000130_E04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGGCATATAGAAAAACTGGCATAAATCATAAGCACGGCGATATCTCCCCGGATCAAAACA
TAGCACTGATTCCCCTACAATATTGGATAGCATTAAATCCCCTATAACATTAGGCATCAT
TAGATATTGCCATATGCCTTGTGCAACCTGCTCAGCTGATTGCTGATCATCCATCATTCG
TAGGAACCTTGGTAATGCAGCTTCACCCTCTGTAGCATTAGAATTCTGGGCATGCATATT
TGGATACATCAATTCCTTGGAAAAACCCTCTCATTTTGTTCCCAAGAATCATTAGGAAAT
TTTTTCCTATTTTGCACATGCTCAAAATCTAGTAAAGCCTCATCAAGCAATTGCACAAGG
TCAACATCAACCACATCTGGATAAACTAGCTCATG
■■Homology search results ■■ -
sp_hit_id Q1EAK2
Definition sp|Q1EAK2|SRB8_COCIM Mediator of RNA polymerase II transcription subunit 12 OS=Coccidioides immitis
Align length 18
Score (bit) 29.3
E-value 6.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919901|Adiantum capillus-veneris mRNA, clone:
YMU001_000130_E04.
         (395 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q1EAK2|SRB8_COCIM Mediator of RNA polymerase II transcription...    29   6.4  
sp|P62295|ASPM_SAGLB Abnormal spindle-like microcephaly-associat...    29   6.4  
sp|Q8WXI7|MUC16_HUMAN Mucin-16 OS=Homo sapiens GN=MUC16 PE=1 SV=2      29   8.3  

>sp|Q1EAK2|SRB8_COCIM Mediator of RNA polymerase II transcription
            subunit 12 OS=Coccidioides immitis GN=SRB8 PE=3 SV=1
          Length = 1491

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = +3

Query: 276  LFPRIIRKFFPILHMLKI 329
            LFPR IRK FP+L +LKI
Sbjct: 1152 LFPRTIRKAFPLLILLKI 1169


>sp|P62295|ASPM_SAGLB Abnormal spindle-like microcephaly-associated
           protein homolog (Fragment) OS=Saguinus labiatus GN=ASPM
           PE=3 SV=1
          Length = 1527

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 227 RILMLQRVKLHYQGSYE*WMISNQLSRLHKA 135
           + L+LQ   +  Q SY  WMI  ++  +H+A
Sbjct: 900 QFLLLQNAAIKIQSSYRRWMIRKRMREMHRA 930


>sp|Q8WXI7|MUC16_HUMAN Mucin-16 OS=Homo sapiens GN=MUC16 PE=1 SV=2
          Length = 22152

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 35   RRYLPGSKHSTDSPTILDSI--KSPITLGIIRYCHMPCAT 148
            R  +PG  HST+SP I   +    PI+LGI    +M   T
Sbjct: 6700 RTSIPGPDHSTESPDISTEVIPSLPISLGITESSNMTIIT 6739
tr_hit_id Q1IFP2
Definition tr|Q1IFP2|Q1IFP2_PSEE4 Selenocysteinyl-tRNA-specific translation factor OS=Pseudomonas entomophila (strain L48)
Align length 67
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919901|Adiantum capillus-veneris mRNA, clone:
YMU001_000130_E04.
         (395 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1IFP2|Q1IFP2_PSEE4 Selenocysteinyl-tRNA-specific translation...    36   1.1  
tr|B1J348|B1J348_PSEPW Selenocysteine-specific translation elong...    34   3.2  
tr|A8RJ41|A8RJ41_9CLOT Putative uncharacterized protein OS=Clost...    34   3.2  
tr|B4HXK7|B4HXK7_DROSE GM14610 OS=Drosophila sechellia GN=GM1461...    34   3.2  
tr|Q16UI9|Q16UI9_AEDAE Putative uncharacterized protein (Fragmen...    33   7.1  
tr|B0KKC0|B0KKC0_PSEPG Selenocysteine-specific translation elong...    33   9.2  

>tr|Q1IFP2|Q1IFP2_PSEE4 Selenocysteinyl-tRNA-specific translation
           factor OS=Pseudomonas entomophila (strain L48) GN=selB
           PE=4 SV=1
          Length = 640

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
 Frame = -3

Query: 258 KELMYPNMHAQNSNATEGEAALPRFLRMMDDQQSAEQVAQGIW---QYLMMPNVIGDLML 88
           K +    +HAQN  A   EA     L +  ++ SAEQV +G W   ++L  P+V  D+ L
Sbjct: 217 KPVRVRGLHAQNQAALVAEAGQRVALNISAEKLSAEQVHRGDWLLPEWLHAPSVRVDIDL 276

Query: 87  SNIVGES 67
           + + GE+
Sbjct: 277 TLLAGET 283


>tr|B1J348|B1J348_PSEPW Selenocysteine-specific translation
           elongation factor OS=Pseudomonas putida (strain W619)
           GN=PputW619_0549 PE=4 SV=1
          Length = 640

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = -3

Query: 258 KELMYPNMHAQNSNATEGEAALPRFLRMMDDQQSAEQVAQGIW---QYLMMPNVIGDLML 88
           K +    +HAQN  A   EA     L +  ++ + EQV +G W   Q+L  P+   D+ L
Sbjct: 217 KAVRVRGLHAQNQAALVAEAGQRVALNIAAERLAVEQVRRGDWLVSQWLHAPSTRVDIEL 276

Query: 87  SNIVGES 67
             + GES
Sbjct: 277 QLLAGES 283


>tr|A8RJ41|A8RJ41_9CLOT Putative uncharacterized protein
           OS=Clostridium bolteae ATCC BAA-613 GN=CLOBOL_00878 PE=4
           SV=1
          Length = 325

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -2

Query: 373 WLMLTLCNCLMRLY*ILSMCKIGKNFLMILGNKMRGFFQGIDVSKY 236
           W+++ +  C++  Y  L+  K G+    + GNK      GIDV KY
Sbjct: 175 WIIIIMLGCVLVAYLFLNFTKHGRYLYAMGGNKEAAKLSGIDVKKY 220


>tr|B4HXK7|B4HXK7_DROSE GM14610 OS=Drosophila sechellia GN=GM14610
           PE=4 SV=1
          Length = 1263

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 14  NWHKS*ARRYLPGSKHSTDSPTILDSIKSPITLGIIRYCHMPCATCSADC 163
           NW  S  R +    + S+   T   +I S  +   +R+C +PC  CSA C
Sbjct: 384 NWRSSSTRIHCISIRCSSTISTTSTTISSSCSSWAVRWCSIPCIICSAPC 433


>tr|Q16UI9|Q16UI9_AEDAE Putative uncharacterized protein (Fragment)
           OS=Aedes aegypti GN=AAEL009896 PE=4 SV=1
          Length = 175

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +2

Query: 11  KNWHKS*ARRYLPGSKHSTDSPTILDSIKSPIT 109
           +NW ++ +RR+ PG+ HS + P IL ++  PI+
Sbjct: 80  RNWFRTRSRRHRPGTAHSFNLPLILFAVAVPIS 112


>tr|B0KKC0|B0KKC0_PSEPG Selenocysteine-specific translation
           elongation factor OS=Pseudomonas putida (strain GB-1)
           GN=PputGB1_0537 PE=4 SV=1
          Length = 640

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
 Frame = -3

Query: 258 KELMYPNMHAQNSNATEGEAALPRFLRMMDDQQSAEQVAQGIW---QYLMMPNVIGDLML 88
           K +    +HAQN  A   EA     L +  ++ + EQV +G W   ++L  P+V  D+ L
Sbjct: 217 KPVRVRGLHAQNQAALVAEAGQRVALNIAAERLTVEQVHRGDWLVPEWLHAPSVRVDIEL 276

Query: 87  SNIVGES 67
           + + GE+
Sbjct: 277 NLLPGET 283