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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919904
Clone id YMU001_000130_E07
Library
Length 368
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000130_E07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCACAGCTATCTCTCCTTTACATTGAATAAGCCCACAATACATGTTGGCAAGCTTCACAC
TGCCCCATCGGCATCTCCAAACCACCACAATAGCATTGCTAGGCATAATATTCCTTATCC
ACTCATCTTAACATCCATCATGAACATATGGTGTCACACTCGCTGGCTGCATATCACAAA
ATAGCTACAACAAAGAACAATTGTAGTGATCATGCAACTCCAAGTACCCTTTCCTTCAGA
ACAAAAACATCATCCATCTCTCCAACCAAGCCACACTTGTAAATTAACATTTGATATGCC
AATTTGCCAGATTATCAAGGACTCGTAAGCAACCCCATAATTGCCATACTTAACAAGAGC
AATGTTGT
■■Homology search results ■■ -
sp_hit_id Q9NGQ2
Definition sp|Q9NGQ2|KIF1_DICDI Kinesin-related protein 1 OS=Dictyostelium discoideum
Align length 49
Score (bit) 32.0
E-value 0.99
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919904|Adiantum capillus-veneris mRNA, clone:
YMU001_000130_E07.
         (368 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9NGQ2|KIF1_DICDI Kinesin-related protein 1 OS=Dictyostelium ...    32   0.99 
sp|Q9MVE5|RBL_TAXDI Ribulose bisphosphate carboxylase large chai...    30   4.9  
sp|P24680|RBL_PODGR Ribulose bisphosphate carboxylase large chai...    30   4.9  
sp|P31184|RBL_DICCR Ribulose bisphosphate carboxylase large chai...    30   4.9  
sp|A6H5I5|RBL_CYCTA Ribulose bisphosphate carboxylase large chai...    30   4.9  
sp|Q32026|RBL_CUNLA Ribulose bisphosphate carboxylase large chai...    30   4.9  
sp|P48696|RBL_CRYJA Ribulose bisphosphate carboxylase large chai...    30   4.9  
sp|P48694|RBL_COFAR Ribulose bisphosphate carboxylase large chai...    30   4.9  
sp|O20304|RBL_CASFS Ribulose bisphosphate carboxylase large chai...    30   4.9  
sp|Q31715|RBL_BERBR Ribulose bisphosphate carboxylase large chai...    30   4.9  
sp|Q95918|NU5M_POLOR NADH-ubiquinone oxidoreductase chain 5 OS=P...    30   4.9  
sp|Q8GVE1|CIGR2_ORYSJ Chitin-inducible gibberellin-responsive pr...    30   4.9  
sp|Q9Z3Q7|RHBF_RHIME Rhizobactin siderophore biosynthesis protei...    29   6.4  
sp|Q94RJ2|NU5M_CHIMO NADH-ubiquinone oxidoreductase chain 5 OS=C...    29   6.4  
sp|Q35813|NU5M_STRCA NADH-ubiquinone oxidoreductase chain 5 OS=S...    29   8.3  
sp|Q9ZZM3|NU5M_SALSA NADH-ubiquinone oxidoreductase chain 5 OS=S...    29   8.3  
sp|P34195|NU5M_CROLA NADH-ubiquinone oxidoreductase chain 5 OS=C...    29   8.3  
sp|Q08CK1|ECSIT_DANRE Evolutionarily conserved signaling interme...    29   8.3  

>sp|Q9NGQ2|KIF1_DICDI Kinesin-related protein 1 OS=Dictyostelium
           discoideum GN=kif1 PE=1 SV=1
          Length = 2205

 Score = 32.0 bits (71), Expect = 0.99
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +1

Query: 127 LNIHHEHMVSHSLAAYHKIATTKNNCSDHATPSTLSFRTKTSSISPTKP 273
           LNIH EH +  ++     I+ + N  +++      S  T TSS SP+KP
Sbjct: 501 LNIHKEHCIFENINGKVIISPSNNFMNNNNNKENSSSTTPTSSKSPSKP 549


>sp|Q9MVE5|RBL_TAXDI Ribulose bisphosphate carboxylase large chain
           OS=Taxodium distichum GN=rbcL PE=3 SV=1
          Length = 475

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = -3

Query: 342 NYGVA-YESL---IIWQIGISNVNLQVWLGWRDG*CFCSE 235
           NYG A YE L   + +     NVN Q ++ WRD  CFC+E
Sbjct: 184 NYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFCFCAE 223


>sp|P24680|RBL_PODGR Ribulose bisphosphate carboxylase large chain
           OS=Podocarpus gracilior GN=rbcL PE=3 SV=1
          Length = 475

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = -3

Query: 342 NYGVA-YESL---IIWQIGISNVNLQVWLGWRDG*CFCSE 235
           NYG A YE L   + +     NVN Q ++ WRD  CFC+E
Sbjct: 184 NYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFCFCAE 223


>sp|P31184|RBL_DICCR Ribulose bisphosphate carboxylase large chain
           (Fragment) OS=Dichapetalum crassifolium GN=rbcL PE=3
           SV=2
          Length = 448

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = -3

Query: 342 NYGVA-YESL---IIWQIGISNVNLQVWLGWRDG*CFCSE 235
           NYG A YE L   + +     NVN Q ++ WRD  CFC+E
Sbjct: 183 NYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFCFCAE 222


>sp|A6H5I5|RBL_CYCTA Ribulose bisphosphate carboxylase large chain
           OS=Cycas taitungensis GN=rbcL PE=3 SV=1
          Length = 475

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = -3

Query: 342 NYGVA-YESL---IIWQIGISNVNLQVWLGWRDG*CFCSE 235
           NYG A YE L   + +     NVN Q ++ WRD  CFC+E
Sbjct: 184 NYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFCFCAE 223


>sp|Q32026|RBL_CUNLA Ribulose bisphosphate carboxylase large chain
           (Fragment) OS=Cunninghamia lanceolata GN=rbcL PE=3 SV=2
          Length = 460

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = -3

Query: 342 NYGVA-YESL---IIWQIGISNVNLQVWLGWRDG*CFCSE 235
           NYG A YE L   + +     NVN Q ++ WRD  CFC+E
Sbjct: 174 NYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFCFCAE 213


>sp|P48696|RBL_CRYJA Ribulose bisphosphate carboxylase large chain
           OS=Cryptomeria japonica GN=rbcL PE=3 SV=2
          Length = 475

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = -3

Query: 342 NYGVA-YESL---IIWQIGISNVNLQVWLGWRDG*CFCSE 235
           NYG A YE L   + +     NVN Q ++ WRD  CFC+E
Sbjct: 184 NYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFCFCAE 223


>sp|P48694|RBL_COFAR Ribulose bisphosphate carboxylase large chain
           OS=Coffea arabica GN=rbcL PE=3 SV=2
          Length = 481

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = -3

Query: 342 NYGVA-YESL---IIWQIGISNVNLQVWLGWRDG*CFCSE 235
           NYG A YE L   + +     NVN Q ++ WRD  CFC+E
Sbjct: 184 NYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFCFCAE 223


>sp|O20304|RBL_CASFS Ribulose bisphosphate carboxylase large chain
           (Fragment) OS=Cassia fistula GN=rbcL PE=3 SV=1
          Length = 465

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = -3

Query: 342 NYGVA-YESL---IIWQIGISNVNLQVWLGWRDG*CFCSE 235
           NYG A YE L   + +     NVN Q ++ WRD  CFC+E
Sbjct: 174 NYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFCFCAE 213


>sp|Q31715|RBL_BERBR Ribulose bisphosphate carboxylase large chain
           (Fragment) OS=Bertiera breviflora GN=rbcL PE=3 SV=1
          Length = 470

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = -3

Query: 342 NYGVA-YESL---IIWQIGISNVNLQVWLGWRDG*CFCSE 235
           NYG A YE L   + +     NVN Q ++ WRD  CFC+E
Sbjct: 175 NYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFCFCAE 214
tr_hit_id A2R2Y8
Definition tr|A2R2Y8|A2R2Y8_ASPNC Contig An14c0100, complete genome. OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
Align length 68
Score (bit) 37.4
E-value 0.38
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919904|Adiantum capillus-veneris mRNA, clone:
YMU001_000130_E07.
         (368 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A2R2Y8|A2R2Y8_ASPNC Contig An14c0100, complete genome. OS=Asp...    37   0.38 
tr|Q6D1C0|Q6D1C0_ERWCT Putative uncharacterized protein OS=Erwin...    34   3.2  
tr|B4IIP1|B4IIP1_DROSE GM16921 OS=Drosophila sechellia GN=GM1692...    29   5.3  
tr|B4QQX1|B4QQX1_DROSI GD12258 OS=Drosophila simulans GN=GD12258...    29   5.4  
tr|A4CB07|A4CB07_9GAMM Acetyltransferase, GNAT family protein OS...    33   7.1  
tr|A2QXZ9|A2QXZ9_ASPNC Similarity to hypothetical protein B13D24...    33   7.1  
tr|B4IUD1|B4IUD1_DROYA GE22765 OS=Drosophila yakuba GN=GE22765 P...    28   8.7  
tr|B7Z079|B7Z079_DROME Teyrha-meyrha, isoform B OS=Drosophila me...    28   8.7  
tr|B4PGD6|B4PGD6_DROYA GE22476 OS=Drosophila yakuba GN=GE22476 P...    28   8.7  
tr|Q9VW27|Q9VW27_DROME Teyrha-meyrha, isoform A OS=Drosophila me...    28   8.8  
tr|Q8SY01|Q8SY01_DROME RE33994p OS=Drosophila melanogaster GN=te...    28   9.2  
tr|B3MCL2|B3MCL2_DROAN GF12868 OS=Drosophila ananassae GN=GF1286...    33   9.3  

>tr|A2R2Y8|A2R2Y8_ASPNC Contig An14c0100, complete genome.
           OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
           GN=An14g02420 PE=3 SV=1
          Length = 966

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 12/68 (17%)
 Frame = +1

Query: 109 YSLSTHLNIHHEHMVSHSLAAYHKIATTKNNCSDHATPSTLS------------FRTKTS 252
           Y++STH     EH  S S  ++H ++T+K+  +   T ST S              T TS
Sbjct: 195 YTISTHSFSSSEHASSESATSFHAVSTSKHTHTHTPTSSTSSSNTPTRSSALTQHETSTS 254

Query: 253 SISPTKPH 276
           S +PT+ H
Sbjct: 255 SSTPTRSH 262


>tr|Q6D1C0|Q6D1C0_ERWCT Putative uncharacterized protein OS=Erwinia
           carotovora subsp. atroseptica GN=ECA3528 PE=4 SV=1
          Length = 238

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 30/101 (29%), Positives = 39/101 (38%), Gaps = 10/101 (9%)
 Frame = +2

Query: 8   YLSFTLNKPTIHVGKLHTAPSA------SPNHHNSIARHNIPYPLILTSIMNIWCHTRWL 169
           YL F  + P    G    AP A      SPN  N IA H   YP +   I  +       
Sbjct: 138 YLPFAESHPQAQAGFAQMAPDAAMPVFFSPNAENQIAEHQKKYPQLKRFISQVLAQDPRP 197

Query: 170 HITK--*LQQRTIVVIMQLQVPFP--SEQKHHPSLQPSHTC 280
              K     +   V++++  V +    EQ    SL PSHTC
Sbjct: 198 AYRKGESATREYAVLLLEFNVRWRVCGEQTEVLSLDPSHTC 238


>tr|B4IIP1|B4IIP1_DROSE GM16921 OS=Drosophila sechellia GN=GM16921
           PE=4 SV=1
          Length = 748

 Score = 28.9 bits (63), Expect(2) = 5.3
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 112 SLSTHLNIHHEHMVSHSLAAYHKIATTKNNCSDHATPSTLSFRT 243
           +++TH ++ H H +SH  AA+H    + +     A P  LS  T
Sbjct: 263 AVTTHHHMAHPHPLSHHHAAHHAALASLSMAGLRAVPGGLSLVT 306



 Score = 23.5 bits (49), Expect(2) = 5.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 68  SASPNHHNSIARHNIPYPL 124
           ++SP+HH     H+ P+PL
Sbjct: 222 ASSPHHHPHTHAHSHPHPL 240


>tr|B4QQX1|B4QQX1_DROSI GD12258 OS=Drosophila simulans GN=GD12258
           PE=4 SV=1
          Length = 636

 Score = 28.9 bits (63), Expect(2) = 5.4
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 112 SLSTHLNIHHEHMVSHSLAAYHKIATTKNNCSDHATPSTLSFRT 243
           +++TH ++ H H +SH  AA+H    + +     A P  LS  T
Sbjct: 273 AVTTHHHMAHPHPLSHHHAAHHAALASLSMAGLRAVPGGLSLVT 316



 Score = 23.5 bits (49), Expect(2) = 5.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 68  SASPNHHNSIARHNIPYPL 124
           ++SP+HH     H+ P+PL
Sbjct: 232 ASSPHHHPHTHAHSHPHPL 250


>tr|A4CB07|A4CB07_9GAMM Acetyltransferase, GNAT family protein
           OS=Pseudoalteromonas tunicata D2 GN=PTD2_22157 PE=4 SV=1
          Length = 152

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 17/38 (44%), Positives = 24/38 (63%)
 Frame = -2

Query: 280 TSVAWLERWMMFLF*RKGYLELHDHYNCSLL*LFCDMQ 167
           T V  LE   +FL  ++  L LHDHY+CS L ++CD +
Sbjct: 31  TMVPHLENAGIFLTAKEHLLRLHDHYHCSHL-IYCDAE 67


>tr|A2QXZ9|A2QXZ9_ASPNC Similarity to hypothetical protein
           B13D24.020 - Neurospora crassa OS=Aspergillus niger
           (strain CBS 513.88 / FGSC A1513) GN=An11g10810 PE=4 SV=1
          Length = 439

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 22/72 (30%), Positives = 34/72 (47%)
 Frame = +1

Query: 52  ASHCPIGISKPPQ*HC*A*YSLSTHLNIHHEHMVSHSLAAYHKIATTKNNCSDHATPSTL 231
           A H P  +  PPQ    A  S   H + HH +    S+  Y   + +K+N   H  PS+ 
Sbjct: 4   ALHPPRVLLHPPQ-FTTAIASRLIHQHPHHHNYTLLSVRPYASHSKSKSNSKSHTRPSSA 62

Query: 232 SFRTKTSSISPT 267
           +  T T++ +PT
Sbjct: 63  AQPTTTTTTTPT 74


>tr|B4IUD1|B4IUD1_DROYA GE22765 OS=Drosophila yakuba GN=GE22765 PE=4
           SV=1
          Length = 833

 Score = 28.1 bits (61), Expect(2) = 8.7
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 112 SLSTHLNIHHEHMVSHSLAAYHKIATTKNNCSDHATPSTLS 234
           +++TH ++ H H +SH  AA+H    + +     A P  LS
Sbjct: 291 AVTTHHHMAHPHPLSHHHAAHHAALASLSMAGLRAVPGGLS 331



 Score = 23.5 bits (49), Expect(2) = 8.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 68  SASPNHHNSIARHNIPYPL 124
           ++SP+HH     H+ P+PL
Sbjct: 232 ASSPHHHPHTHAHSHPHPL 250


>tr|B7Z079|B7Z079_DROME Teyrha-meyrha, isoform B OS=Drosophila
           melanogaster GN=tey PE=4 SV=1
          Length = 822

 Score = 28.1 bits (61), Expect(2) = 8.7
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 112 SLSTHLNIHHEHMVSHSLAAYHKIATTKNNCSDHATPSTLS 234
           +++TH ++ H H +SH  AA+H    + +     A P  LS
Sbjct: 273 AVTTHHHMAHPHPLSHHHAAHHAALASLSMAGLRAVPGGLS 313



 Score = 23.5 bits (49), Expect(2) = 8.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 68  SASPNHHNSIARHNIPYPL 124
           ++SP+HH     H+ P+PL
Sbjct: 232 ASSPHHHPHTHAHSHPHPL 250


>tr|B4PGD6|B4PGD6_DROYA GE22476 OS=Drosophila yakuba GN=GE22476 PE=4
           SV=1
          Length = 814

 Score = 28.1 bits (61), Expect(2) = 8.7
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 112 SLSTHLNIHHEHMVSHSLAAYHKIATTKNNCSDHATPSTLS 234
           +++TH ++ H H +SH  AA+H    + +     A P  LS
Sbjct: 273 AVTTHHHMAHPHPLSHHHAAHHAALASLSMAGLRAVPGGLS 313



 Score = 23.5 bits (49), Expect(2) = 8.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 68  SASPNHHNSIARHNIPYPL 124
           ++SP+HH     H+ P+PL
Sbjct: 232 ASSPHHHPHTHAHSHPHPL 250


>tr|Q9VW27|Q9VW27_DROME Teyrha-meyrha, isoform A OS=Drosophila
           melanogaster GN=tey PE=1 SV=2
          Length = 717

 Score = 28.1 bits (61), Expect(2) = 8.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 112 SLSTHLNIHHEHMVSHSLAAYHKIATTKNNCSDHATPSTLS 234
           +++TH ++ H H +SH  AA+H    + +     A P  LS
Sbjct: 273 AVTTHHHMAHPHPLSHHHAAHHAALASLSMAGLRAVPGGLS 313



 Score = 23.5 bits (49), Expect(2) = 8.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 68  SASPNHHNSIARHNIPYPL 124
           ++SP+HH     H+ P+PL
Sbjct: 232 ASSPHHHPHTHAHSHPHPL 250