BP919905
Clone id YMU001_000130_E08
Library
Length 345
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000130_E08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TCATTGCTGTCCGTAGCTGCTCAGAGCTTCCTCGAGGAACATGCAGACTTTCAAGCTCTT
CCCTTGAGCATATGTCGTGATGCCTTTGCTATAGTTTCCTGGAGAATCTTCGTTGCCTCT
CATTCTCCGCTTCTTGATTTCTGATATCTTGCATCACTTTCTCCTGCATGATGCTCTTAT
AATGCGATTCTGCAGCAACACCTTTGGCTATTTCTTCTTCAACTGCTATAAGCTCGTTTT
CCCTTGCTTGAAAAGCTTCAATGTCATCTTTCGCAGACTCATGTAATAGATCTATCTCAG
ACCTTATGGAGGAAACCTTCTCTTGGCTTTGTGAACGCTTAATCT
■■Homology search results ■■ -
sp_hit_id Q06704
Definition sp|Q06704|IMH1_YEAST Golgin IMH1 OS=Saccharomyces cerevisiae
Align length 59
Score (bit) 32.3
E-value 0.75
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919905|Adiantum capillus-veneris mRNA, clone:
YMU001_000130_E08.
(345 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q06704|IMH1_YEAST Golgin IMH1 OS=Saccharomyces cerevisiae GN=... 32 0.75
sp|O14248|TEA3_SCHPO Tip elongation aberrant protein 3 OS=Schizo... 32 0.98
sp|Q33568|CYB_TRYBO Cytochrome b OS=Trypanoplasma borreli GN=MT-... 32 1.3
sp|A6T716|MUKB_KLEP7 Chromosome partition protein mukB OS=Klebsi... 30 2.9
sp|P27536|POST_XENLA Posterior protein OS=Xenopus laevis GN=po P... 30 3.7
sp|Q8EER9|SYT_SHEON Threonyl-tRNA synthetase OS=Shewanella oneid... 30 4.9
sp|Q6DEU9|CTR9_XENTR RNA polymerase-associated protein CTR9 homo... 30 4.9
sp|Q4QR29|CTR9_XENLA RNA polymerase-associated protein CTR9 homo... 30 4.9
sp|A1S6G4|SYT_SHEAM Threonyl-tRNA synthetase OS=Shewanella amazo... 29 6.4
sp|Q10168|NSP1_SCHPO Nucleoporin nsp1 OS=Schizosaccharomyces pom... 29 8.3
sp|Q5FKF0|CCA_LACAC CCA-adding enzyme OS=Lactobacillus acidophil... 29 8.3

>sp|Q06704|IMH1_YEAST Golgin IMH1 OS=Saccharomyces cerevisiae
GN=IMH1 PE=1 SV=1
Length = 911

Score = 32.3 bits (72), Expect = 0.75
Identities = 19/59 (32%), Positives = 33/59 (55%)
Frame = -3

Query: 334 SQSQEKVSSIRSEIDLLHESAKDDIEAFQARENELIAVEEEIAKGVAAESHYKSIMQEK 158
S+ E+V +++ E+D L IEA++A+ EL + E ++K V H K++ EK
Sbjct: 418 SKQNEEVKTVKLELDDLRHKNATMIEAYEAKNTELRSKIELLSKKV---EHLKNLCTEK 473


>sp|O14248|TEA3_SCHPO Tip elongation aberrant protein 3
OS=Schizosaccharomyces pombe GN=tea3 PE=1 SV=1
Length = 1125

Score = 32.0 bits (71), Expect = 0.98
Identities = 16/59 (27%), Positives = 34/59 (57%)
Frame = -3

Query: 334 SQSQEKVSSIRSEIDLLHESAKDDIEAFQARENELIAVEEEIAKGVAAESHYKSIMQEK 158
S+S++K+S + S+++ LHE ++ + R EL+ ++++ + Y S+M EK
Sbjct: 873 SKSKQKISYLESQLEGLHELLRESQRLCEGRTKELLNSQQKL---YDLKHSYSSVMTEK 928


>sp|Q33568|CYB_TRYBO Cytochrome b OS=Trypanoplasma borreli GN=MT-CYB
PE=2 SV=2
Length = 372

Score = 31.6 bits (70), Expect = 1.3
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +2

Query: 113 LPLILRFLISD---ILHHFLLHDALIMRFCSNTFGYFFFNCYKL 235
LP +L FLI +LH+FL D L+ RF +FFF Y L
Sbjct: 187 LPFVLLFLIGAHFFVLHYFLSSDGLLDRFPFYYERFFFFLLYYL 230


>sp|A6T716|MUKB_KLEP7 Chromosome partition protein mukB
OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC
700721 / MGH 78578) GN=mukB PE=3 SV=1
Length = 1482

Score = 30.4 bits (67), Expect = 2.9
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = -3

Query: 331 QSQEKVSSIRSEIDLLHESAKDDIEAFQARENE----LIAVEEEIAKGVAAESHYKSIMQ 164
Q+ E+ ++ DL ESA + +E FQA+E E ++++E++++ A S ++ Q
Sbjct: 421 QALERAKALCHLPDLTPESADEWLETFQAKEQEATEKMLSLEQKMSVAQTAHSQFEQAYQ 480


>sp|P27536|POST_XENLA Posterior protein OS=Xenopus laevis GN=po PE=2
SV=1
Length = 555

Score = 30.0 bits (66), Expect = 3.7
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = -3

Query: 325 QEKVSSIRSEIDLLHESAKDDIEAFQARENELIAVEEE 212
+EKV + + DLL E KD E + RE E+I++E +
Sbjct: 113 REKVELLAKQNDLLEEKLKDCEERCRLREQEVISLESK 150


>sp|Q8EER9|SYT_SHEON Threonyl-tRNA synthetase OS=Shewanella
oneidensis GN=thrS PE=3 SV=1
Length = 642

Score = 29.6 bits (65), Expect = 4.9
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -3

Query: 298 EIDLLHESAKDDIEAFQARENELIAVEEEIAKGVAA 191
+IDL H+ +DDIEA + R EL ++ K V +
Sbjct: 105 DIDLEHKLTQDDIEALEKRMLELAKTNYDVVKRVVS 140


>sp|Q6DEU9|CTR9_XENTR RNA polymerase-associated protein CTR9 homolog
OS=Xenopus tropicalis GN=ctr9 PE=2 SV=1
Length = 1172

Score = 29.6 bits (65), Expect = 4.9
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = -3

Query: 334 SQSQEKVSSIRSEIDLLHESAKDDIEAFQARENELIAVEEEIAKGVAAESHYKSIMQEKV 155
S QEK +S + + E DD+EA+ E I + +I ++A I+QEKV
Sbjct: 388 SDDQEKRDIAKSHLKKVTEQYPDDVEAW--IELAQILEQTDIQNALSAYGTATRILQEKV 445

Query: 154 MQDI 143
D+
Sbjct: 446 QADV 449


>sp|Q4QR29|CTR9_XENLA RNA polymerase-associated protein CTR9 homolog
OS=Xenopus laevis GN=ctr9 PE=2 SV=1
Length = 1157

Score = 29.6 bits (65), Expect = 4.9
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = -3

Query: 334 SQSQEKVSSIRSEIDLLHESAKDDIEAFQARENELIAVEEEIAKGVAAESHYKSIMQEKV 155
S QEK +S + + E DD+EA+ E I + +I ++A I+QEKV
Sbjct: 388 SDDQEKRDIAKSHLKKVTEQYPDDVEAW--IELAQILEQTDIQNALSAYGTATRILQEKV 445

Query: 154 MQDI 143
D+
Sbjct: 446 QADV 449


>sp|A1S6G4|SYT_SHEAM Threonyl-tRNA synthetase OS=Shewanella
amazonensis (strain ATCC BAA-1098 / SB2B) GN=thrS PE=3
SV=1
Length = 642

Score = 29.3 bits (64), Expect = 6.4
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 12/63 (19%)
Frame = -3

Query: 298 EIDLLHESAKDDIEAFQARENELIAVEEEIAKGVAA------------ESHYKSIMQEKV 155
++DL H+ DDI A + R EL + ++ K V + ES+ +I+ E +
Sbjct: 105 DVDLEHKLTADDIAALEKRMLELAKTDYDVVKRVVSWQEARDTFEGRGESYKMAILDENI 164

Query: 154 MQD 146
+D
Sbjct: 165 AKD 167


>sp|Q10168|NSP1_SCHPO Nucleoporin nsp1 OS=Schizosaccharomyces pombe
GN=nsp1 PE=1 SV=1
Length = 598

Score = 28.9 bits (63), Expect = 8.3
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -3

Query: 322 EKVSSIRSEIDLLHESAKDDIEAFQARENELIAVEEEIAKGVA 194
E VSS + E+ L +S + +E F R + VE E A GVA
Sbjct: 485 EYVSSSQQELFKLLDSYETQLETFDGRATSALNVERERAFGVA 527


tr_hit_id A7PBP4
Definition tr|A7PBP4|A7PBP4_VITVI Chromosome chr16 scaffold_10, whole genome shotgun sequence OS=Vitis vinifera
Align length 110
Score (bit) 62.4
E-value 1.0e-08
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919905|Adiantum capillus-veneris mRNA, clone:
YMU001_000130_E08.
(345 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7PBP4|A7PBP4_VITVI Chromosome chr16 scaffold_10, whole genom... 62 1e-08
tr|Q9S722|Q9S722_ARATH SMC-like protein OS=Arabidopsis thaliana ... 59 2e-07
tr|Q9FII7|Q9FII7_ARATH SMC-like protein OS=Arabidopsis thaliana ... 59 2e-07
tr|A9SB22|A9SB22_PHYPA Predicted protein OS=Physcomitrella paten... 54 5e-06
tr|Q9FLR5|Q9FLR5_ARATH SMC-like protein OS=Arabidopsis thaliana ... 49 1e-04
tr|B3L069|B3L069_PLAKH Putative uncharacterized protein OS=Plasm... 36 1.1
tr|A5KAF7|A5KAF7_PLAVI Putative uncharacterized protein OS=Plasm... 35 1.9
tr|A2F531|A2F531_TRIVA Viral A-type inclusion protein, putative ... 34 3.2
tr|A5WF04|A5WF04_PSYWF Putative uncharacterized protein OS=Psych... 33 5.4
tr|Q4DZ12|Q4DZ12_TRYCR Putative uncharacterized protein OS=Trypa... 33 5.4
tr|B5VNK9|B5VNK9_YEAS6 YLR309Cp-like protein (Fragment) OS=Sacch... 33 5.4
tr|B3RHI8|B3RHI8_YEAS1 Putative uncharacterized protein OS=Sacch... 33 5.4
tr|Q1HTS3|Q1HTS3_9POXV F3L OS=Squirrelpox virus GN=F3L PE=4 SV=1 33 7.1
tr|Q4DAG7|Q4DAG7_TRYCR Putative uncharacterized protein OS=Trypa... 33 7.1
tr|B8LWI1|B8LWI1_9EURO Putative uncharacterized protein OS=Talar... 33 7.1
tr|A6UUY2|A6UUY2_META3 Permease OS=Methanococcus aeolicus (strai... 33 9.3

>tr|A7PBP4|A7PBP4_VITVI Chromosome chr16 scaffold_10, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00014189001
PE=4 SV=1
Length = 623

Score = 62.4 bits (150), Expect = 1e-08
Identities = 32/110 (29%), Positives = 60/110 (54%)
Frame = -3

Query: 343 IKRSQSQEKVSSIRSEIDLLHESAKDDIEAFQARENELIAVEEEIAKGVAAESHYKSIMQ 164
++ S++ K + ++ + L ESAK +I+A++A ENEL+ +E+E+ ++HY+ IM
Sbjct: 308 LRMSKADAKANDLKLSFENLCESAKVEIDAYEAAENELVVIEQELCSAETEKTHYEGIMN 367

Query: 163 EKVMQDIXXXXXXXXXXXRFSRKL*QRHHDICSREELESLHVPRGSSEQL 14
KV+ DI ++ ++ IC E+E+L + + EQL
Sbjct: 368 NKVLPDIKEAETQYQELEHNRKESCRKASIICPESEIEALGGCKSTPEQL 417


>tr|Q9S722|Q9S722_ARATH SMC-like protein OS=Arabidopsis thaliana
GN=MIM PE=2 SV=1
Length = 1055

Score = 58.5 bits (140), Expect = 2e-07
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 1/107 (0%)
Frame = -3

Query: 331 QSQEKVSSIRSEIDLLHESAKDDIEAFQARENELIAVEEEIAKGVAAESHYKSIMQEKVM 152
+++ K + + + + + ESAK +I+AF+ ENEL +E+++ A + HY++IM+ KV+
Sbjct: 743 EAELKANKLTALFENMRESAKGEIDAFEEAENELKKIEKDLQSAEAEKIHYENIMKNKVL 802

Query: 151 QDIXXXXXXXXXXXRFSRKL*QRHHDICSREELESLHVPRGSS-EQL 14
DI ++ Q+ +IC E+ESL GS+ EQL
Sbjct: 803 PDIKNAEANYEELKNKRKESDQKASEICPESEIESLGPWDGSTPEQL 849


>tr|Q9FII7|Q9FII7_ARATH SMC-like protein OS=Arabidopsis thaliana
GN=At5g61460 PE=4 SV=1
Length = 1057

Score = 58.5 bits (140), Expect = 2e-07
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 1/107 (0%)
Frame = -3

Query: 331 QSQEKVSSIRSEIDLLHESAKDDIEAFQARENELIAVEEEIAKGVAAESHYKSIMQEKVM 152
+++ K + + + + + ESAK +I+AF+ ENEL +E+++ A + HY++IM+ KV+
Sbjct: 745 EAELKANKLTALFENMRESAKGEIDAFEEAENELKKIEKDLQSAEAEKIHYENIMKNKVL 804

Query: 151 QDIXXXXXXXXXXXRFSRKL*QRHHDICSREELESLHVPRGSS-EQL 14
DI ++ Q+ +IC E+ESL GS+ EQL
Sbjct: 805 PDIKNAEANYEELKNKRKESDQKASEICPESEIESLGPWDGSTPEQL 851


>tr|A9SB22|A9SB22_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_210410 PE=4 SV=1
Length = 1028

Score = 53.5 bits (127), Expect = 5e-06
Identities = 25/66 (37%), Positives = 43/66 (65%)
Frame = -3

Query: 340 KRSQSQEKVSSIRSEIDLLHESAKDDIEAFQARENELIAVEEEIAKGVAAESHYKSIMQE 161
K ++QEKV + +++ D L ESAK DIEA + E EL+ +E+E+ + V + H++ +M+
Sbjct: 713 KVERAQEKVDAAKAQFDGLRESAKVDIEASRIAERELMLLEDELKEAVKQKEHFEGVMER 772

Query: 160 KVMQDI 143
V+ I
Sbjct: 773 NVLAPI 778


>tr|Q9FLR5|Q9FLR5_ARATH SMC-like protein OS=Arabidopsis thaliana
GN=At5g07660 PE=4 SV=1
Length = 1058

Score = 48.9 bits (115), Expect = 1e-04
Identities = 25/96 (26%), Positives = 53/96 (55%)
Frame = -3

Query: 331 QSQEKVSSIRSEIDLLHESAKDDIEAFQARENELIAVEEEIAKGVAAESHYKSIMQEKVM 152
+++ K + +++ + L+ESAK +IEA + E+EL E+E+ ++HY+ IM++KV+
Sbjct: 746 EAELKANELKASYENLYESAKGEIEALEKAEDELKEKEDELHSAETEKNHYEDIMKDKVL 805

Query: 151 QDIXXXXXXXXXXXRFSRKL*QRHHDICSREELESL 44
+I ++ ++ IC E+++L
Sbjct: 806 PEIKQAETIYKELEMKRQESNKKASIICPESEIKAL 841


>tr|B3L069|B3L069_PLAKH Putative uncharacterized protein
OS=Plasmodium knowlesi (strain H) GN=PKH_030070 PE=4
SV=1
Length = 952

Score = 35.8 bits (81), Expect = 1.1
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 10/61 (16%)
Frame = -3

Query: 322 EKVSSIRSEIDLLHESAKDDIEAFQAR---------ENELIAVEEEIAKGV-AAESHYKS 173
+K+ +R E ++L E K+ IEAFQA+ ENEL+ E + K + + YK+
Sbjct: 674 QKIKKLRGEKNILEEDLKNTIEAFQAQLDTVKRFKDENELVKTNEHLMKEIKLLQDKYKN 733

Query: 172 I 170
+
Sbjct: 734 V 734


>tr|A5KAF7|A5KAF7_PLAVI Putative uncharacterized protein
OS=Plasmodium vivax GN=PVX_000550 PE=4 SV=1
Length = 967

Score = 35.0 bits (79), Expect = 1.9
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 10/61 (16%)
Frame = -3

Query: 322 EKVSSIRSEIDLLHESAKDDIEAFQAR---------ENELIAVEEEIAKGV-AAESHYKS 173
+K+ +R E ++L E K+ IEAFQA+ ENEL+ E + K + + YK
Sbjct: 692 QKIKKLRGEKNMLEEDLKNTIEAFQAQLDTVKRFKDENELLKTNEHLMKEIKLLQDKYKD 751

Query: 172 I 170
+
Sbjct: 752 V 752


>tr|A2F531|A2F531_TRIVA Viral A-type inclusion protein, putative
OS=Trichomonas vaginalis G3 GN=TVAG_216960 PE=4 SV=1
Length = 3748

Score = 34.3 bits (77), Expect = 3.2
Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Frame = -3

Query: 322 EKVSSIRSEIDLLHESAKDDIEAFQARENELIAVEEEIAKGVAAESHYKSIMQE--KVMQ 149
E++ ++S+ID H+ D EA + E EL +++EE+ K E I +E K+ +
Sbjct: 1353 EEIEKVKSDIDSKHQLNNDIKEANEVVEEELNSLKEELEKIEPVEDKSDEIRKEIVKIQK 1412

Query: 148 DIXXXXXXXXXXXRFSRKL*QRHHDICSREELESLHVPRGSSEQLR 11
+I + L + +D+ + +LE + + SE+++
Sbjct: 1413 EIETKKATNCGISESNELLNKELNDL--KNQLEEIAEEKDDSEEIK 1456


>tr|A5WF04|A5WF04_PSYWF Putative uncharacterized protein
OS=Psychrobacter sp. (strain PRwf-1) GN=PsycPRwf_1299
PE=4 SV=1
Length = 1211

Score = 33.5 bits (75), Expect = 5.4
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Frame = -3

Query: 343 IKRSQSQEKV--SSIRSEIDLLHESAKDDIEAFQAR-ENELIAVEEEIAKGVAAE 188
I R Q++ K ++IRSE+ L + KDDIEA A +EL ++I + ++AE
Sbjct: 699 ISREQAERKSENTAIRSELALADQGLKDDIEAKDAAIRSELTQSSQQIQEAISAE 753


>tr|Q4DZ12|Q4DZ12_TRYCR Putative uncharacterized protein
OS=Trypanosoma cruzi GN=Tc00.1047053510303.70 PE=4 SV=1
Length = 653

Score = 33.5 bits (75), Expect = 5.4
Identities = 16/43 (37%), Positives = 28/43 (65%)
Frame = -3

Query: 340 KRSQSQEKVSSIRSEIDLLHESAKDDIEAFQARENELIAVEEE 212
+RS E+V ++R +ID+L + + E FQ RENE++ + +E
Sbjct: 244 RRSGIIEEVKALRRDIDVLLTAQRRGDEIFQERENEMLEIMKE 286