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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919906
Clone id YMU001_000130_E09
Library
Length 448
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000130_E09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CATCCCAAGAGTGCCTTGTCTGTAACCCAAAAATCCGAACAAGAAGACCAAATTCATAGG
AAAGCTCTCAAAAAGAGTGTGTGACCCTGAAATTGCAAAAGCCATGCAATTGTCCCCCAC
GTCACAAATCCATCATGAATGCGAACTTGATAAGCAAACAACATACCGCCCTCCAAGCCG
GTTGTGCATAAGGACACACCCAAAAACAAAGGACAACTCCAATAAAGTACATCGCTGGCA
TGTCAGGGCAGTGCACCTAGCCCAAGTGCCTTTTCACAAAATCTTGCATGTGCAAGCATC
CACATGAAATAGCATGTCCGACGGCCGACTCTAAGGCTCCAAATGCATGACCAAAACTAT
AGCCGAAACAGCAAAAGAAATGTGCGATTCATACCAATCTATAGCTAAGGTGGACGGTGA
GGAGGGTGATGCACCCTCAATGGGACCC
■■Homology search results ■■ -
sp_hit_id Q6ZQF0
Definition sp|Q6ZQF0|TOPB1_MOUSE DNA topoisomerase II-binding protein 1 OS=Mus musculus
Align length 18
Score (bit) 29.3
E-value 7.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919906|Adiantum capillus-veneris mRNA, clone:
YMU001_000130_E09.
         (448 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6ZQF0|TOPB1_MOUSE DNA topoisomerase II-binding protein 1 OS=...    29   7.8  
sp|P59382|PXMP4_RAT Peroxisomal membrane protein 4 OS=Rattus nor...    29   7.8  
sp|Q9JJW0|PXMP4_MOUSE Peroxisomal membrane protein 4 OS=Mus musc...    29   7.8  
sp|A5PJL1|PXMP4_BOVIN Peroxisomal membrane protein 4 OS=Bos taur...    29   7.8  
sp|P08575|CD45_HUMAN Leukocyte common antigen OS=Homo sapiens GN...    29   8.0  

>sp|Q6ZQF0|TOPB1_MOUSE DNA topoisomerase II-binding protein 1 OS=Mus
           musculus GN=Topbp1 PE=1 SV=2
          Length = 1515

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 221 WSCPLFLGVSLCTTGLEG 168
           + CP+FLG  +C TGL G
Sbjct: 195 FKCPIFLGCIICVTGLNG 212


>sp|P59382|PXMP4_RAT Peroxisomal membrane protein 4 OS=Rattus
           norvegicus GN=Pxmp4 PE=1 SV=2
          Length = 212

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 12/73 (16%)
 Frame = -3

Query: 194 SLCTTGLEGGMLFAYQ---VRIHDGFVTWGTIAWLLQFQGHTL---------FLRAFL*I 51
           +LC  G+E G + A +     +H   V WG + WL ++   TL         +L     +
Sbjct: 137 ALCRLGVEKGYIPALKWDPFPLHTA-VIWGLVLWLFEYHRPTLQPSLQSSMTYLYEDSNV 195

Query: 50  WSSCSDFWVTDKA 12
           W   SDF + +K+
Sbjct: 196 WHDLSDFLIFNKS 208


>sp|Q9JJW0|PXMP4_MOUSE Peroxisomal membrane protein 4 OS=Mus
           musculus GN=Pxmp4 PE=2 SV=3
          Length = 212

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 12/73 (16%)
 Frame = -3

Query: 194 SLCTTGLEGGMLFAYQ---VRIHDGFVTWGTIAWLLQFQGHTL---------FLRAFL*I 51
           +LC  G+E G + A +     +H   V WG + WL ++   TL         +L     +
Sbjct: 137 ALCRLGVEKGYIPALKWDPFPLHTA-VIWGLVLWLFEYHRPTLQPSLQSSMTYLYEDSNV 195

Query: 50  WSSCSDFWVTDKA 12
           W   SDF + +K+
Sbjct: 196 WHDLSDFLIFNKS 208


>sp|A5PJL1|PXMP4_BOVIN Peroxisomal membrane protein 4 OS=Bos taurus
           GN=PXMP4 PE=2 SV=1
          Length = 212

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
 Frame = -3

Query: 194 SLCTTGLEGGMLFAYQVRIHDGF--VTWGTIAWLLQFQGHTL---------FLRAFL*IW 48
           +LC  G+E G +   ++     F  + WG + WL ++   TL         +L     +W
Sbjct: 137 ALCRLGVEKGFIPEPRLDPFPWFSGLVWGLVLWLFEYHRPTLQPSLQSSMTYLYEDSNVW 196

Query: 47  SSCSDFWVTDKA 12
              SDF++ +K+
Sbjct: 197 HDLSDFFIYNKS 208


>sp|P08575|CD45_HUMAN Leukocyte common antigen OS=Homo sapiens
           GN=PTPRC PE=1 SV=2
          Length = 1304

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 16/65 (24%), Positives = 25/65 (38%)
 Frame = +2

Query: 83  DPEIAKAMQLSPTSQIHHECELDKQTTYRPPSRLCIRTHPKTKDNSNKVHRWHVRAVHLA 262
           DP        SP S    E +  + TT   P     +  P + DN++  +   V +V   
Sbjct: 46  DPLPTHTTAFSPASTFERENDFSETTTSLSPDNTSTQVSPDSLDNASAFNTTGVSSVQTP 105

Query: 263 QVPFH 277
            +P H
Sbjct: 106 HLPTH 110
tr_hit_id Q47B16
Definition tr|Q47B16|Q47B16_DECAR Inner-membrane translocator:ABC transporter related OS=Dechloromonas aromatica (strain RCB)
Align length 56
Score (bit) 35.0
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919906|Adiantum capillus-veneris mRNA, clone:
YMU001_000130_E09.
         (448 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q47B16|Q47B16_DECAR Inner-membrane translocator:ABC transport...    35   1.8  
tr|Q4Y9E9|Q4Y9E9_PLABE Putative uncharacterized protein (Fragmen...    35   1.9  
tr|Q2UN50|Q2UN50_ASPOR Permeases of the major facilitator superf...    35   2.4  
tr|B8NNJ3|B8NNJ3_ASPFL Efflux pump antibiotic resistance protein...    35   2.4  
tr|Q5WZ39|Q5WZ39_LEGPL Phosphatidate cytidylyltransferase OS=Leg...    35   2.5  
tr|B0XXL7|B0XXL7_ASPFC BZIP transcription factor (AtfA), putativ...    33   5.5  
tr|Q6MBI2|Q6MBI2_PARUW Putative ADP/ATP translocase OS=Protochla...    33   7.2  
tr|A2FP11|A2FP11_TRIVA Putative uncharacterized protein OS=Trich...    33   9.4  

>tr|Q47B16|Q47B16_DECAR Inner-membrane translocator:ABC transporter
           related OS=Dechloromonas aromatica (strain RCB)
           GN=Daro_3235 PE=4 SV=1
          Length = 597

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -3

Query: 266 LGLGALP*-HASDVLYWSCPLFLGVSLCTTGLEGGMLFAYQVRIHDGFVTWGTIAW 102
           +GLGA    + S  L WS  + LG  L  +GL  G++ +  VR+   F+   TIAW
Sbjct: 63  VGLGAYTTAYLSTTLGWSPWIGLGAGLVVSGLAAGLIGSITVRLSGHFLPLATIAW 118


>tr|Q4Y9E9|Q4Y9E9_PLABE Putative uncharacterized protein (Fragment)
           OS=Plasmodium berghei GN=PB406032.00.0 PE=4 SV=1
          Length = 151

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 220 GVVL-CFWVCPYAQPAWRAVCCLLIKFAFMMD 128
           G+VL C+WVC   QP W++V C L K   +++
Sbjct: 35  GMVLHCWWVCKLLQPLWKSVWCFLRKLDIVLE 66


>tr|Q2UN50|Q2UN50_ASPOR Permeases of the major facilitator
           superfamily OS=Aspergillus oryzae GN=AO090001000505 PE=4
           SV=1
          Length = 551

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 21/68 (30%), Positives = 33/68 (48%)
 Frame = -3

Query: 209 LFLGVSLCTTGLEGGMLFAYQVRIHDGFVTWGTIAWLLQFQGHTLFLRAFL*IWSSCSDF 30
           L LG++L  TG+E  ++    V I +    +G  +W++    + L    FL IWS   D 
Sbjct: 43  LGLGLALFLTGIEATIVSTSLVTITNDLDDFGRSSWVI--TSYLLTYTGFLMIWSKIGDI 100

Query: 29  WVTDKALL 6
           W    +LL
Sbjct: 101 WRVKTSLL 108


>tr|B8NNJ3|B8NNJ3_ASPFL Efflux pump antibiotic resistance protein,
           putative OS=Aspergillus flavus NRRL3357 GN=AFLA_128040
           PE=4 SV=1
          Length = 325

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 21/68 (30%), Positives = 33/68 (48%)
 Frame = -3

Query: 209 LFLGVSLCTTGLEGGMLFAYQVRIHDGFVTWGTIAWLLQFQGHTLFLRAFL*IWSSCSDF 30
           L LG++L  TG+E  ++    V I +    +G  +W++    + L    FL IWS   D 
Sbjct: 43  LGLGLALFLTGIEATIVSTSLVTITNDLDDFGRSSWVI--TSYLLTYTGFLMIWSKIGDI 100

Query: 29  WVTDKALL 6
           W    +LL
Sbjct: 101 WRVKTSLL 108


>tr|Q5WZ39|Q5WZ39_LEGPL Phosphatidate cytidylyltransferase
           OS=Legionella pneumophila (strain Lens) GN=cdsA PE=3
           SV=1
          Length = 265

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 256 VHCPDMPAMYFIGVVLCFWVCPYAQPAWRAV 164
           VH   M A + I +++CFW C Y  P W +V
Sbjct: 49  VHNLSMQACFLIFLLMCFWACGYLYPYWLSV 79


>tr|B0XXL7|B0XXL7_ASPFC BZIP transcription factor (AtfA), putative
           OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 /
           FGSC A1163) GN=AFUB_037850 PE=3 SV=1
          Length = 555

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 116 PTSQIHHECELDKQTTYRPPSRLCIRTHPKTKDNSNKVH 232
           P     H+ ++D QT+  PPSR  + T   T D  N VH
Sbjct: 81  PLQHAQHKPDVDPQTSLAPPSRPAVTTATDTPDYFNSVH 119


>tr|Q6MBI2|Q6MBI2_PARUW Putative ADP/ATP translocase
           OS=Protochlamydia amoebophila (strain UWE25) GN=ntt_5
           PE=4 SV=1
          Length = 489

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = -2

Query: 273 KGTWARCTALTCQRCTLLELSFVFGCVLMHNRLGGRYVVCLSSSHS*WICDVGDNCMAFA 94
           K TW +  ALT   C L+  S  F  +LM   L          S +  I  +G  C  F+
Sbjct: 330 KFTWTQI-ALTTPLCLLITSSAFFSSLLMPKELLAEIASFFQFSPTQLIVTLGSICYVFS 388

Query: 93  ISGSHTLFES 64
           +S  +T+F++
Sbjct: 389 MSAKYTIFDT 398


>tr|A2FP11|A2FP11_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_496740 PE=4 SV=1
          Length = 424

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -2

Query: 261 ARCTALTCQRCTLLELSFVFGCVLMHNRLGGRYVVCLSSSHS*WIC 124
           A CT ++C        SF +G   MH  LGG ++V  + S S +IC
Sbjct: 89  AACTWISCFVINFSASSFFYGIYCMHIYLGGVHLVLFTISSSAYIC 134