BP919914
Clone id YMU001_000130_F05
Library
Length 424
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000130_F05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
AACCTCTTCAATGAATTGGCAGCATCCCAAGACCACACACACACACACACGGGGGATGTC
AAGGGCCGCATTGTGAAATGCATGCACCTACCAGCATGTGCTCTCCGGTAATATTGCATT
CCTTTCGAGCACAAGCCTTTCTAGGATGGTAATTACAATAGCATACAATGAGGAAGGACA
TATTCACAACCAAGCACTCTTCAAAGACAATCACCAAAGTGACTGCTGCTATGACTTCTT
TTCAAGGTAAAGAAAAATTGGCCAGGTCTGGTCTTCTATGCAAGCCCTCCTGGAACAATT
GTAATATTCACATTTACAGTCGATCTCTCCTGCTTTCATTGCACCCCTGGAAGAGGCAAT
TATGGCATCATGTGACCATCTTCACCGTCACTGCAGACATCAAAGGATCAATGCAAGCCC
TCCA
■■Homology search results ■■ -
sp_hit_id B0R0W9
Definition sp|B0R0W9|TBC8B_DANRE TBC1 domain family member 8B OS=Danio rerio
Align length 78
Score (bit) 29.6
E-value 4.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919914|Adiantum capillus-veneris mRNA, clone:
YMU001_000130_F05.
(389 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|B0R0W9|TBC8B_DANRE TBC1 domain family member 8B OS=Danio reri... 30 4.9
sp|Q9EQJ4|ZN384_RAT Zinc finger protein 384 OS=Rattus norvegicus... 29 8.4
sp|Q8TF68|ZN384_HUMAN Zinc finger protein 384 OS=Homo sapiens GN... 29 8.4
sp|Q5NC05|TTF2_MOUSE Transcription termination factor 2 OS=Mus m... 29 8.4

>sp|B0R0W9|TBC8B_DANRE TBC1 domain family member 8B OS=Danio rerio
GN=tbc1d8b PE=4 SV=1
Length = 1108

Score = 29.6 bits (65), Expect = 4.9
Identities = 24/78 (30%), Positives = 34/78 (43%)
Frame = +2

Query: 2 TSSMNWQHPKTTHTHTRGMSRAAL*NACTYQHVLSGNIAFLSSTSLSRMVITIAYNEEGH 181
+S N P TTHTH+R ++R+A H+L N L + + I YN
Sbjct: 808 SSLFNLLQPWTTHTHSRSLARSAF-------HLLDENGDGLVNFKEFICGLDILYNRSFT 860

Query: 182 IHNQALFKDNHQSDCCYD 235
+ LFK + Q D D
Sbjct: 861 EKLKLLFKLHLQPDSAED 878


>sp|Q9EQJ4|ZN384_RAT Zinc finger protein 384 OS=Rattus norvegicus
GN=Znf384 PE=1 SV=1
Length = 579

Score = 28.9 bits (63), Expect = 8.4
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +1

Query: 7 FNELAASQDHTHTHTGDVKGRIVKCMHLPAC 99
F +L+ Q HT HTGD R KC H P C
Sbjct: 355 FRQLSHLQQHTRIHTGD---RPYKCAH-PGC 381


>sp|Q8TF68|ZN384_HUMAN Zinc finger protein 384 OS=Homo sapiens
GN=ZNF384 PE=1 SV=1
Length = 576

Score = 28.9 bits (63), Expect = 8.4
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +1

Query: 7 FNELAASQDHTHTHTGDVKGRIVKCMHLPAC 99
F +L+ Q HT HTGD R KC H P C
Sbjct: 354 FRQLSHLQQHTRIHTGD---RPYKCAH-PGC 380


>sp|Q5NC05|TTF2_MOUSE Transcription termination factor 2 OS=Mus
musculus GN=Ttf2 PE=2 SV=2
Length = 1138

Score = 28.9 bits (63), Expect = 8.4
Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 6/113 (5%)
Frame = +3

Query: 57 CQGPHCEMHAPTSMCSPVILHSFRAQAFLGW*LQ*HTMRKDIFTTKHSSKTITKVTAAMT 236
C G P + P++LH +A A+L W + KT+T + +T
Sbjct: 529 CPGETAVAEDPAGLKVPLLLHQKQALAWLLWRESQKPQGGILADDMGLGKTLTMIALILT 588

Query: 237 --SFQGKEKLARSGLLCKPSWNNCNIHIYSRSLLLS----LHPWKRQLWHHVT 377
+ Q ++ RS + S N+ ++ S +L++ +H WK ++ VT
Sbjct: 589 KKNQQKSKEKERSEPVTWLSKNDSSVFTSSGTLIVCPASLIHHWKNEVEKRVT 641


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919914|Adiantum capillus-veneris mRNA, clone:
YMU001_000130_F05.
(389 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******