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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919920
Clone id YMU001_000130_F11
Library
Length 414
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000130_F11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GCAAAACAAGAGTAGAAAGAGTAAGGGGCTGGAATATGGGGGCAAAGACAAAAGTATAGG
AACAAAAAATTGGGAAGAAGGGGAAAACCAGGTCTGTCTAGTCCACTAGACTTCTATGTG
ACTCGCATACATGATTGCATGGCACGGTGTGGGCGAGACCGGGCCGCAAACAGAAGAAGC
CAGCATTTCCAATTGAACGGGGTGTCGGACAGTGGAGACAAGCACAATCAAAATGCTGCC
GATGTGAAGCTGGCTGACCATGTCATGCATTGCCGATTGCACTAATGATTACAAAAGCAT
TGAAAACATACATCTGCTGACACTATGGGGTGATCCTGGATGGGGTTGATGGCTCAGTGG
GAGTAGCTCTTCGAGGGGTATGGCCACCGGATTCCTTGGACTTATCCGACGAGG
■■Homology search results ■■ -
sp_hit_id Q62671
Definition sp|Q62671|UBR5_RAT E3 ubiquitin-protein ligase UBR5 (Fragment) OS=Rattus norvegicus
Align length 32
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919920|Adiantum capillus-veneris mRNA, clone:
YMU001_000130_F11.
         (414 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q62671|UBR5_RAT E3 ubiquitin-protein ligase UBR5 (Fragment) O...    32   1.3  
sp|Q80TP3|UBR5_MOUSE E3 ubiquitin-protein ligase UBR5 OS=Mus mus...    32   1.3  
sp|O95071|UBR5_HUMAN E3 ubiquitin-protein ligase UBR5 OS=Homo sa...    32   1.3  
sp|Q58274|HDRC2_METJA CoB--CoM heterodisulfide reductase iron-su...    31   1.7  
sp|Q2A069|GLYC_MOBVC Pre-glycoprotein polyprotein GP complex OS=...    31   2.2  
sp|P77173|ZIPA_ECOLI Cell division protein zipA OS=Escherichia c...    30   3.8  
sp|B1IX59|ZIPA_ECOLC Cell division protein zipA homolog OS=Esche...    30   3.8  
sp|P31030|SPYA_RABIT Serine--pyruvate aminotransferase OS=Orycto...    30   4.9  
sp|Q8NGF6|O10W1_HUMAN Olfactory receptor 10W1 OS=Homo sapiens GN...    30   4.9  
sp|Q5U2X5|ACK1_RAT Activated CDC42 kinase 1 OS=Rattus norvegicus...    29   8.4  
sp|O54967|ACK1_MOUSE Activated CDC42 kinase 1 OS=Mus musculus GN...    29   8.4  
sp|Q8NGY9|OR2L8_HUMAN Olfactory receptor 2L8 OS=Homo sapiens GN=...    29   8.4  
sp|P20020|AT2B1_HUMAN Plasma membrane calcium-transporting ATPas...    29   8.4  

>sp|Q62671|UBR5_RAT E3 ubiquitin-protein ligase UBR5 (Fragment)
           OS=Rattus norvegicus GN=Ubr5 PE=2 SV=2
          Length = 920

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 399 PRNPVAIPLEELLPLSHQPHPGSPHSVSRCMF 304
           P NP  +PL E +PL+ QPH   P++    +F
Sbjct: 158 PPNPFEVPLAEAIPLADQPHLLQPNARKEDLF 189


>sp|Q80TP3|UBR5_MOUSE E3 ubiquitin-protein ligase UBR5 OS=Mus musculus
            GN=Ubr5 PE=1 SV=2
          Length = 2792

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 399  PRNPVAIPLEELLPLSHQPHPGSPHSVSRCMF 304
            P NP  +PL E +PL+ QPH   P++    +F
Sbjct: 2030 PPNPFEVPLAEAIPLADQPHLLQPNARKEDLF 2061


>sp|O95071|UBR5_HUMAN E3 ubiquitin-protein ligase UBR5 OS=Homo sapiens
            GN=UBR5 PE=1 SV=2
          Length = 2799

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 399  PRNPVAIPLEELLPLSHQPHPGSPHSVSRCMF 304
            P NP  +PL E +PL+ QPH   P++    +F
Sbjct: 2036 PPNPFEVPLAEAIPLADQPHLLQPNARKEDLF 2067


>sp|Q58274|HDRC2_METJA CoB--CoM heterodisulfide reductase
           iron-sulfur subunit C 2 OS=Methanocaldococcus jannaschii
           GN=hdrC2 PE=3 SV=1
          Length = 186

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +1

Query: 40  GQRQKYRNKKLGRRGKPGLSSPLD----FYVTRIHDCMARCGRD 159
           G+R  YR +K+ R+   GL   LD    +Y T  + C  RC RD
Sbjct: 49  GRRTAYRTRKVLRKVLLGLDDVLDSDDIWYCTTCYTCYERCPRD 92


>sp|Q2A069|GLYC_MOBVC Pre-glycoprotein polyprotein GP complex
           OS=Mobala virus (isolate Rat/Central African
           Republic/Acar 3080/1983) GN=GPC PE=1 SV=1
          Length = 491

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -3

Query: 220 CLHCPTPRSIGNAGFFCLRPGLAHTVPCNHVCESH 116
           C HC TP     AGF C+R    + +  N   E H
Sbjct: 196 CTHCDTPLGASIAGFNCVRTSYKYLIIQNTTWEDH 230


>sp|P77173|ZIPA_ECOLI Cell division protein zipA OS=Escherichia coli
           (strain K12) GN=zipA PE=1 SV=3
          Length = 328

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -1

Query: 399 PRNPVAIPLEELLPLSHQPHPGSP 328
           PR PV  P E  +P  H PHP  P
Sbjct: 101 PRQPVQQPPEAQVPPQHAPHPAQP 124


>sp|B1IX59|ZIPA_ECOLC Cell division protein zipA homolog
           OS=Escherichia coli (strain ATCC 8739 / DSM 1576 /
           Crooks) GN=zipA PE=3 SV=1
          Length = 328

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -1

Query: 399 PRNPVAIPLEELLPLSHQPHPGSP 328
           PR PV  P E  +P  H PHP  P
Sbjct: 101 PRQPVQQPPEAQVPPQHAPHPAQP 124


>sp|P31030|SPYA_RABIT Serine--pyruvate aminotransferase
           OS=Oryctolagus cuniculus GN=AGXT PE=2 SV=1
          Length = 392

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 31  GIWGQRQKYRNKKLGRRGKPGLSSPLDFY-VTRIHDCMAR 147
           GIWGQR     +++G R  P +  P   Y +  + +C+A+
Sbjct: 106 GIWGQRAAEVGERIGARVHPMIKDPGSHYTLQEVEECLAQ 145


>sp|Q8NGF6|O10W1_HUMAN Olfactory receptor 10W1 OS=Homo sapiens
           GN=OR10W1 PE=2 SV=1
          Length = 305

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -3

Query: 208 PTPRSIGNAGFFCLRPGLAHTVPC-NHVCESHRSLVD*TDLVFPFFPIFCSYTFVFAPIF 32
           P  ++ G   FFC  P + H V   +H+ E    +     +  PFF I  SYTF+ A + 
Sbjct: 158 PFCQAQGIEHFFCDVPPVMHVVCAQSHIHEQSVLVAAILAIAVPFFLITTSYTFIVAALL 217

Query: 31  Q 29
           +
Sbjct: 218 K 218


>sp|Q5U2X5|ACK1_RAT Activated CDC42 kinase 1 OS=Rattus norvegicus
           GN=Tnk2 PE=2 SV=1
          Length = 1040

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 402 SPRNPVAIPLEELLPLSHQPHPGSPHSVSRCM 307
           SP  P A+P+  LLP    P P +P +  R M
Sbjct: 881 SPEEPAALPVPPLLPPPSTPAPAAPTATVRPM 912
tr_hit_id B8LN40
Definition tr|B8LN40|B8LN40_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 29
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919920|Adiantum capillus-veneris mRNA, clone:
YMU001_000130_F11.
         (414 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LN40|B8LN40_PICSI Putative uncharacterized protein OS=Picea...    36   1.1  
tr|Q08R92|Q08R92_STIAU Putative uncharacterized protein OS=Stigm...    35   2.4  
tr|B3ITK3|B3ITK3_MONDO Olfactory receptor (Fragment) OS=Monodelp...    34   3.2  
tr|B6MBB3|B6MBB3_BRAFL Putative uncharacterized protein OS=Branc...    34   4.1  
tr|B7FXC7|B7FXC7_PHATR Predicted protein OS=Phaeodactylum tricor...    33   5.4  
tr|B3M760|B3M760_DROAN GF24931 (Fragment) OS=Drosophila ananassa...    33   7.1  
tr|Q6C3M1|Q6C3M1_YARLI YALI0E33671p OS=Yarrowia lipolytica GN=YA...    33   9.3  

>tr|B8LN40|B8LN40_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 340

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 17/29 (58%), Positives = 18/29 (62%)
 Frame = -3

Query: 412 SSDKSKESGGHTPRRATPTEPSTPSRITP 326
           S DKSKES G TP +    E  TPS ITP
Sbjct: 312 SDDKSKESNGQTPPQQATPEARTPSAITP 340


>tr|Q08R92|Q08R92_STIAU Putative uncharacterized protein
           OS=Stigmatella aurantiaca DW4/3-1 GN=STIAU_7684 PE=4
           SV=1
          Length = 406

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = -1

Query: 411 RRISPRNPVAIPLEELLPLSHQPHPGSPHSVSRCMFSMLL*SLVQSAMHDMVSQLHIGSI 232
           R + P   +A PL   L   H PHP +P        +  L  +V   +  +V+ LH    
Sbjct: 136 RPLRPLQHLAEPLPAHLLRGHSPHPSNPTDPVDGHGAQSLSDVVDGGLRRIVADLHDVGD 195

Query: 231 LIVLVSTVRHPV-QLEML 181
            +VL + + HPV +LE+L
Sbjct: 196 GVVLAALLLHPVLELEVL 213


>tr|B3ITK3|B3ITK3_MONDO Olfactory receptor (Fragment) OS=Monodelphis
           domestica GN=opor103 PE=4 SV=1
          Length = 216

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = -3

Query: 178 FFCLRPGLAHTVPCN--HVCESHRSLVD*TDLVFPFFPIFCSYTFVFAPIFQ 29
           FFC  P L   + C+  H+ ES   ++   + +FPFF IF SY F+F  I +
Sbjct: 110 FFCDIPPLL-VLSCSEIHIIESIIFILGSFNAIFPFFVIFTSYLFIFITILK 160


>tr|B6MBB3|B6MBB3_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_80359 PE=4 SV=1
          Length = 995

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
 Frame = +1

Query: 43  QRQKYRNKKLGRRGKPGLSSPLDFYVTRIHDCMARCGRDRAANRRSQHFQ-----LNGVS 207
           Q  KY+  K  R+G   L  P D  +   HD  A  G    A RR +H +     L G +
Sbjct: 35  QNPKYKGGKHDRKGAGRLQGPAD--IGTRHDRTAAGGLQGPAVRRPRHNRSAIESLQGPA 92

Query: 208 DSGDKHNQNAA 240
           D G +H++ AA
Sbjct: 93  DRGPRHDRTAA 103


>tr|B7FXC7|B7FXC7_PHATR Predicted protein OS=Phaeodactylum
           tricornutum CCAP 1055/1 GN=PHATRDRAFT_45342 PE=4 SV=1
          Length = 1366

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = -3

Query: 280 AIGNA*HGQPASHRQHFDCACLHCPTPRSIGNAGFFCLRPGLAHTVPCNH 131
           AIG++   +PA              +PR +GNA   C+R  +AHTVP  H
Sbjct: 392 AIGSSLKSEPAKSLLQMSLGT----SPRPVGNAADLCVRAHVAHTVPETH 437


>tr|B3M760|B3M760_DROAN GF24931 (Fragment) OS=Drosophila ananassae
           GN=GF24931 PE=4 SV=1
          Length = 315

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +1

Query: 127 IHDCMARCGRDRAANRRSQHFQLNGVSDSGDKHNQNAADVKLADHVMH 270
           I  C+A  GR   + +    F LN +  + DK + ++  +KLADH++H
Sbjct: 144 IEKCLAEEGRQVDSAQEPPSFTLNQLRVALDKGSNHSVPLKLADHMLH 191


>tr|Q6C3M1|Q6C3M1_YARLI YALI0E33671p OS=Yarrowia lipolytica
           GN=YALI0E33671g PE=3 SV=1
          Length = 500

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 250 ASHRQHFDCACLHCPTPRSIGNAGFFCLRPGLAHTVPCNH 131
           A H Q ++   + C TPR +GN  +F +   + HT P  H
Sbjct: 325 ADHPQSWNEKIVMCGTPREVGNHSYFSINNRIGHTSPEIH 364