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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919926
Clone id YMU001_000130_G05
Library
Length 427
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000130_G05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATGAAAGACTTCATGCATATCAGGAAGGACAAGCACAAGCGCCCAGAGAAACCTAGTATG
AAACAAGTCGTCCACACTTGGGCGCCCCAAATTGACAGTTGGCCATAGAATTTACGTACA
AGGACCAGCAGCAGAAACACACTAGCAAATTTCTGATAATGATTGTGTCAGGCCCACTCC
CTAATTATAAGTATACAAGATCTCTTGTGGTACAAAAATTTAATTGAAGCCTTCAAACCA
GCTTTGTCAAGGTATGACCTGAGGGCCACTATAAGGAACTCCCTCAACAACGAAGTCATC
AGAAGGTTGACATTCTTCAAGCCATGCAAGATCTAAATGCTGACCGTCTCTCCTCCGATC
TACCGTACTTGCAAAGCTGGAATATGGAAAATCTCTATAGTAAGTGCAATGCCGGCCATC
TTGTGCA
■■Homology search results ■■ -
sp_hit_id Q6PDY2
Definition sp|Q6PDY2|AEDO_MOUSE 2-aminoethanethiol dioxygenase OS=Mus musculus
Align length 62
Score (bit) 43.9
E-value 0.0003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919926|Adiantum capillus-veneris mRNA, clone:
YMU001_000130_G05.
         (414 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6PDY2|AEDO_MOUSE 2-aminoethanethiol dioxygenase OS=Mus muscu...    44   3e-04
sp|Q96SZ5|AEDO_HUMAN 2-aminoethanethiol dioxygenase OS=Homo sapi...    43   4e-04
sp|Q3BBV0|NBPF1_HUMAN Neuroblastoma breakpoint family member 1 O...    31   2.2  
sp|Q0BA70|RHAMD_BURCM L-rhamnonate dehydratase OS=Burkholderia a...    30   4.9  
sp|P38737|ECM29_YEAST Proteasome component ECM29 OS=Saccharomyce...    30   4.9  
sp|Q5UPQ4|YL764_MIMIV Putative ankyrin repeat protein L764 OS=Ac...    29   6.5  
sp|Q49U13|MATK_EQUAR Maturase K OS=Equisetum arvense GN=matK PE=...    29   8.4  
sp|B0UWZ4|FMT_HAES2 Methionyl-tRNA formyltransferase OS=Haemophi...    29   8.4  
sp|Q0I182|FMT_HAES1 Methionyl-tRNA formyltransferase OS=Haemophi...    29   8.4  

>sp|Q6PDY2|AEDO_MOUSE 2-aminoethanethiol dioxygenase OS=Mus musculus
           GN=Ado PE=1 SV=2
          Length = 256

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = -2

Query: 410 QDGRHCTYYRDF----PYSSFASTVDRRRDGQHLDLAWLEECQPSDDFVVEGVPYSGPQV 243
           +DGR C YYR      P  +  S  D  R+       WL E   +DDF  EG PY GP+V
Sbjct: 201 EDGRDCHYYRVVEPIRPKEASGSACDLPRE------VWLLETPQADDFWCEGEPYPGPKV 254

Query: 242 IP 237
           +P
Sbjct: 255 LP 256


>sp|Q96SZ5|AEDO_HUMAN 2-aminoethanethiol dioxygenase OS=Homo sapiens
           GN=ADO PE=1 SV=2
          Length = 270

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = -2

Query: 407 DGRHCTYYRDF----PYSSFASTVDRRRDGQHLDLAWLEECQPSDDFVVEGVPYSGPQVI 240
           DGR C YYR      P  + +S  D  R+       WL E   +DDF  EG PY GP+V 
Sbjct: 216 DGRDCHYYRVLEPVRPKEASSSACDLPRE------VWLLETPQADDFWCEGEPYPGPKVF 269

Query: 239 P 237
           P
Sbjct: 270 P 270


>sp|Q3BBV0|NBPF1_HUMAN Neuroblastoma breakpoint family member 1
           OS=Homo sapiens GN=NBPF1 PE=2 SV=1
          Length = 1214

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -2

Query: 257 SGPQVIP*QSWFEGFN*IFVPQEILYTYN*GVGLTQSLSE--IC*CVSAAG 111
           S  + +P +SW EG++ + +P E+L +Y    G   SL E  +C  V   G
Sbjct: 822 SEEEEVPQESWDEGYSTLSIPPEMLASYQSYSGTFHSLEEQQVCMAVDIGG 872


>sp|Q0BA70|RHAMD_BURCM L-rhamnonate dehydratase OS=Burkholderia
           ambifaria (strain ATCC BAA-244 / AMMD) GN=Bamb_3399 PE=3
           SV=1
          Length = 392

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -2

Query: 395 CTYYRDFPYSSFASTVDRRRDGQH-LDLAWLEECQPSDDF 279
           C    D PY++      R   G H L L W+EEC P DD+
Sbjct: 215 CWMSLDVPYAT------RLAHGAHALGLKWIEECLPPDDY 248


>sp|P38737|ECM29_YEAST Proteasome component ECM29 OS=Saccharomyces
           cerevisiae GN=ECM29 PE=1 SV=1
          Length = 1868

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +2

Query: 266 LPQQRSHQKVDILQAMQDLNADRLSSDLPYLQSWNMENLYS 388
           L Q  + ++ D L+ + D   D+L +D+  +Q+W+  +LYS
Sbjct: 840 LLQVSAQERKDFLKKVMDTIQDKLINDVTAIQTWSYLSLYS 880


>sp|Q5UPQ4|YL764_MIMIV Putative ankyrin repeat protein L764
           OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L764 PE=4
           SV=1
          Length = 647

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
 Frame = +2

Query: 95  EFTYKDQQQKHTSKFLIMIVSGP---LPNYKYTRSLVVQKFN*SLQTSFVKV*PEGHYKE 265
           E+ YKD   +     +I    G    + NY YT  L V         +F+        KE
Sbjct: 488 EYQYKDNLDEIIMTIIIGDCDGAKNMIMNYNYTSDLKVLY-------AFI-------LKE 533

Query: 266 LPQQRSHQKVDILQAMQDLNAD 331
            P++ S +K+D ++ + D NAD
Sbjct: 534 FPEECSSEKMDTIKFLLDFNAD 555


>sp|Q49U13|MATK_EQUAR Maturase K OS=Equisetum arvense GN=matK PE=3
           SV=1
          Length = 476

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -3

Query: 271 REFLIVALRSYLDKAGLKASIKFLYHKRSCILIIR 167
           +EF +V   S++DK+ +  S +F+ + R   L+IR
Sbjct: 32  KEFYVVTSDSFIDKSNMNLSKEFVLNDRYSFLVIR 66


>sp|B0UWZ4|FMT_HAES2 Methionyl-tRNA formyltransferase OS=Haemophilus
           somnus (strain 2336) GN=fmt PE=3 SV=1
          Length = 317

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = +2

Query: 215 SLQTSFVKV*PEGHYKELPQQRSHQKVDILQAMQDLNAD 331
           +L+ S VK+  E H+  + Q +S +KV++ + +  LNAD
Sbjct: 45  TLRASAVKILAEKHHIPVYQPKSLRKVEVQEHLSKLNAD 83


>sp|Q0I182|FMT_HAES1 Methionyl-tRNA formyltransferase OS=Haemophilus
           somnus (strain 129Pt) GN=fmt PE=3 SV=1
          Length = 317

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = +2

Query: 215 SLQTSFVKV*PEGHYKELPQQRSHQKVDILQAMQDLNAD 331
           +L+ S VK+  E H+  + Q +S +KV++ + +  LNAD
Sbjct: 45  TLRASAVKILAEKHHIPVYQPKSLRKVEVQENLSKLNAD 83
tr_hit_id A7QI58
Definition tr|A7QI58|A7QI58_VITVI Chromosome chr17 scaffold_101, whole genome shotgun sequence OS=Vitis vinifera
Align length 56
Score (bit) 56.6
E-value 6.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919926|Adiantum capillus-veneris mRNA, clone:
YMU001_000130_G05.
         (414 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7QI58|A7QI58_VITVI Chromosome chr17 scaffold_101, whole geno...    57   6e-07
tr|A5B4I9|A5B4I9_VITVI Putative uncharacterized protein OS=Vitis...    57   6e-07
tr|A7PGJ7|A7PGJ7_VITVI Chromosome chr17 scaffold_16, whole genom...    54   3e-06
tr|A5ASY9|A5ASY9_VITVI Putative uncharacterized protein OS=Vitis...    54   3e-06
tr|B8LRF3|B8LRF3_PICSI Putative uncharacterized protein OS=Picea...    54   4e-06
tr|B7FNC1|B7FNC1_MEDTR Putative uncharacterized protein OS=Medic...    54   5e-06
tr|A7PMP1|A7PMP1_VITVI Chromosome chr14 scaffold_21, whole genom...    52   1e-05
tr|A9TN53|A9TN53_PHYPA Predicted protein OS=Physcomitrella paten...    49   1e-04
tr|Q9SJI9|Q9SJI9_ARATH Expressed protein (At2g42670) OS=Arabidop...    49   1e-04
tr|Q9LXT4|Q9LXT4_ARATH Putative uncharacterized protein T20N10_2...    49   1e-04
tr|Q8LFV9|Q8LFV9_ARATH Putative uncharacterized protein OS=Arabi...    49   1e-04
tr|Q0WUD4|Q0WUD4_ARATH Putative uncharacterized protein At2g4267...    49   1e-04
tr|B6TJB8|B6TJB8_MAIZE Cupin, RmlC-type OS=Zea mays PE=2 SV=1          47   5e-04
tr|A7PJI2|A7PJI2_VITVI Chromosome chr12 scaffold_18, whole genom...    47   5e-04
tr|A9PDV9|A9PDV9_POPTR Putative uncharacterized protein OS=Popul...    47   6e-04
tr|A9PJM9|A9PJM9_POPJC Putative uncharacterized protein OS=Popul...    45   0.001
tr|Q9FLE5|Q9FLE5_ARATH Similarity to unknown protein OS=Arabidop...    45   0.002
tr|Q8LGJ5|Q8LGJ5_ARATH Putative uncharacterized protein (Putativ...    45   0.002
tr|A9TAG2|A9TAG2_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.002
tr|Q84SU3|Q84SU3_ORYSJ Putative uncharacterized protein (Express...    43   0.007
tr|A3AKZ6|A3AKZ6_ORYSJ Putative uncharacterized protein OS=Oryza...    43   0.007
tr|A2XK77|A2XK77_ORYSI Putative uncharacterized protein OS=Oryza...    43   0.007
tr|B3KXN9|B3KXN9_HUMAN cDNA FLJ45793 fis, clone NT2RI2009233 OS=...    43   0.007
tr|B1AL29|B1AL29_HUMAN Chromosome 10 open reading frame 22 OS=Ho...    43   0.007
tr|Q9LGQ4|Q9LGQ4_ORYSJ Putative uncharacterized protein P0510F03...    43   0.009
tr|Q940G4|Q940G4_ARATH Putative uncharacterized protein OS=Arabi...    43   0.009
tr|Q8L8X2|Q8L8X2_ARATH Putative uncharacterized protein OS=Arabi...    43   0.009
tr|Q1G3U6|Q1G3U6_ARATH Putative uncharacterized protein OS=Arabi...    43   0.009
tr|Q0JQ23|Q0JQ23_ORYSJ Os01g0185500 protein OS=Oryza sativa subs...    43   0.009
tr|B8ADM9|B8ADM9_ORYSI Putative uncharacterized protein OS=Oryza...    43   0.009

>tr|A7QI58|A7QI58_VITVI Chromosome chr17 scaffold_101, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00000103001
           PE=4 SV=1
          Length = 191

 Score = 56.6 bits (135), Expect = 6e-07
 Identities = 23/56 (41%), Positives = 33/56 (58%)
 Frame = -2

Query: 407 DGRHCTYYRDFPYSSFASTVDRRRDGQHLDLAWLEECQPSDDFVVEGVPYSGPQVI 240
           +GRHCTYY DFPY++F+      +  +     WL+E +  + FVV G  Y GPQ +
Sbjct: 134 EGRHCTYYNDFPYATFSGDTGSLQAEEMEGCGWLKEMEKPESFVVVGAMYRGPQFV 189


>tr|A5B4I9|A5B4I9_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_034572 PE=4 SV=1
          Length = 270

 Score = 56.6 bits (135), Expect = 6e-07
 Identities = 23/56 (41%), Positives = 33/56 (58%)
 Frame = -2

Query: 407 DGRHCTYYRDFPYSSFASTVDRRRDGQHLDLAWLEECQPSDDFVVEGVPYSGPQVI 240
           +GRHCTYY DFPY++F+      +  +     WL+E +  + FVV G  Y GPQ +
Sbjct: 213 EGRHCTYYNDFPYATFSGDTGSLQAEEMEGCGWLKEMEKPESFVVVGAMYRGPQFV 268


>tr|A7PGJ7|A7PGJ7_VITVI Chromosome chr17 scaffold_16, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00017584001
           PE=4 SV=1
          Length = 251

 Score = 54.3 bits (129), Expect = 3e-06
 Identities = 23/54 (42%), Positives = 32/54 (59%)
 Frame = -2

Query: 404 GRHCTYYRDFPYSSFASTVDRRRDGQHLDLAWLEECQPSDDFVVEGVPYSGPQV 243
           GR CTYY D+PYSSF++  +    G+  D AWL E +  DD  +    Y+GP +
Sbjct: 196 GRKCTYYHDYPYSSFSTGNEAEISGKEEDYAWLAEIETPDDLYMRQGVYAGPAI 249


>tr|A5ASY9|A5ASY9_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_000851 PE=4 SV=1
          Length = 286

 Score = 54.3 bits (129), Expect = 3e-06
 Identities = 23/54 (42%), Positives = 32/54 (59%)
 Frame = -2

Query: 404 GRHCTYYRDFPYSSFASTVDRRRDGQHLDLAWLEECQPSDDFVVEGVPYSGPQV 243
           GR CTYY D+PYSSF++  +    G+  D AWL E +  DD  +    Y+GP +
Sbjct: 231 GRKCTYYHDYPYSSFSTGNEAEISGKEEDYAWLAEIETPDDLYMRQGVYAGPAI 284


>tr|B8LRF3|B8LRF3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 239

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 26/57 (45%), Positives = 33/57 (57%)
 Frame = -2

Query: 407 DGRHCTYYRDFPYSSFASTVDRRRDGQHLDLAWLEECQPSDDFVVEGVPYSGPQVIP 237
           +GRHC+YYR  P    +       D     LAWLE+ QP DDFVV+   Y GP+V+P
Sbjct: 183 NGRHCSYYRKLPKRIPSGLQLNGIDVASYQLAWLEDYQPPDDFVVQRGLYRGPKVVP 239


>tr|B7FNC1|B7FNC1_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 262

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 24/55 (43%), Positives = 36/55 (65%)
 Frame = -2

Query: 407 DGRHCTYYRDFPYSSFASTVDRRRDGQHLDLAWLEECQPSDDFVVEGVPYSGPQV 243
           +GR CTYY D+PYS+F++      DG   + AWL E +PS+ ++  GV Y+GP +
Sbjct: 207 EGRKCTYYHDYPYSTFSAGNGSLCDGDEDEYAWLAEVEPSNLYMNSGV-YAGPAI 260


>tr|A7PMP1|A7PMP1_VITVI Chromosome chr14 scaffold_21, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00020892001
           PE=4 SV=1
          Length = 279

 Score = 52.0 bits (123), Expect = 1e-05
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
 Frame = -2

Query: 407 DGRHCTYYRDFPYSSFA----STVDRRRDGQHLDLAWLEECQPSDDFVVEGVPYSGPQVI 240
           +GR CTYY DFP+++F+    S  +  R+G     AWL+E +  +DF V G  Y+GP ++
Sbjct: 222 EGRDCTYYFDFPFTNFSVDGVSVPEEEREGY----AWLQEREKLEDFAVVGAVYNGPMIV 277


>tr|A9TN53|A9TN53_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_196607 PE=4 SV=1
          Length = 254

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 25/56 (44%), Positives = 30/56 (53%)
 Frame = -2

Query: 404 GRHCTYYRDFPYSSFASTVDRRRDGQHLDLAWLEECQPSDDFVVEGVPYSGPQVIP 237
           GRHCTYYR   +       D     Q   + WLEE  P DDFVV+   Y GP++IP
Sbjct: 201 GRHCTYYRITSHEGEVEASD-----QPGSIEWLEEFHPPDDFVVQRGIYRGPRIIP 251


>tr|Q9SJI9|Q9SJI9_ARATH Expressed protein (At2g42670) OS=Arabidopsis
           thaliana GN=At2g42670 PE=2 SV=2
          Length = 241

 Score = 48.9 bits (115), Expect = 1e-04
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = -2

Query: 413 AQDGRHCTYYRDFPYSSFASTVDRRRDGQHL-DLAWLEECQPSDDFVVEGVPYSGPQV 243
           ++  RHCTY+R          ++   DG+ + D+ WLEE QP DDFV+  +PY GP +
Sbjct: 184 SEHDRHCTYFRKSRREDLPGELEV--DGEVVTDVTWLEEFQPPDDFVIRRIPYRGPVI 239


>tr|Q9LXT4|Q9LXT4_ARATH Putative uncharacterized protein T20N10_20
           (Putative uncharacterized protein At3g58670) (Putative
           uncharacterized protein) OS=Arabidopsis thaliana
           GN=T20N10_20 PE=2 SV=1
          Length = 242

 Score = 48.9 bits (115), Expect = 1e-04
 Identities = 21/54 (38%), Positives = 29/54 (53%)
 Frame = -2

Query: 404 GRHCTYYRDFPYSSFASTVDRRRDGQHLDLAWLEECQPSDDFVVEGVPYSGPQV 243
           GRHC Y+R  P       ++        ++ WLEE QP D+FV+  VPY GP +
Sbjct: 187 GRHCNYFRKSPMLDLPGEIEVMNGEVISNVTWLEEYQPPDNFVIWRVPYRGPVI 240