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NBDC - LSDB Archive
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BP919935
Clone id YMU001_000130_H03
Library
Length 418
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000130_H03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GCGGGGACTCACAACCATGGCTAGCTCCTTGCGAGATCTCGAGCTTCTCATGGATTACAA
CACAAAGCTTGTCTCTTCTGCGGCCTCCCCTGTAGCAGCAGCTCACATTTCTTCATCTCT
ACCAATTGCTTCAACAGAAACGGAAGCACAAGGACTGGAAGAGCAGGCTCTGGCGTTACA
GAATCATCGCCAGCACGCAGTATCTTTTCACCATCGCCCTTCCCTGCTTGCCTCCCTTTC
CCTTGCCTTTGGTCCCGTCCTCTCCTTCAACCCTTGCCTCTCCAAATCGAGAGTTATGGC
TGCAAATTCAATAGCTTCTTCTGGAGCGAAGCTTCTCTCACAAAAGAAATGTATTAGCCC
TACCCCTGTGATGCCAGCAATATCTGCGGCAACAACGTATCTGGATATGGAAGGGGCA
■■Homology search results ■■ -
sp_hit_id P70211
Definition sp|P70211|DCC_MOUSE Netrin receptor DCC OS=Mus musculus
Align length 90
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919935|Adiantum capillus-veneris mRNA, clone:
YMU001_000130_H03.
         (418 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P70211|DCC_MOUSE Netrin receptor DCC OS=Mus musculus GN=Dcc P...    32   1.3  
sp|Q556Y7|LYSD_DICDI Lysozyme D OS=Dictyostelium discoideum GN=a...    31   2.2  
sp|P43146|DCC_HUMAN Netrin receptor DCC OS=Homo sapiens GN=DCC P...    31   2.2  
sp|Q8N1L1|CV037_HUMAN Putative uncharacterized protein C22orf37 ...    31   2.2  
sp|P47777|CD59_SAISC CD59 glycoprotein OS=Saimiri sciureus GN=CD...    31   2.2  
sp|Q59MJ2|MCH1_CANAL Probable transporter MCH1 OS=Candida albica...    30   2.9  
sp|P02836|HMEN_DROME Segmentation polarity homeobox protein engr...    30   2.9  
sp|Q5RCR9|CSTP1_PONAB Uncharacterized metallophosphoesterase CST...    30   2.9  
sp|Q9BRF8|CSTP1_HUMAN Uncharacterized metallophosphoesterase CST...    30   2.9  
sp|Q9DA04|TMM89_MOUSE Transmembrane protein 89 OS=Mus musculus G...    30   3.8  
sp|Q5M7P5|NOL6_XENTR Nucleolar protein 6 OS=Xenopus tropicalis G...    29   6.4  
sp|Q9QJ16|IE2_HHV6Z Immediate-early protein 2 OS=Human herpesvir...    29   6.4  
sp|Q8R1H8|BATF2_MOUSE Basic leucine zipper transcriptional facto...    29   6.4  
sp|Q8N1G0|ZN687_HUMAN Zinc finger protein 687 OS=Homo sapiens GN...    29   8.4  
sp|Q924T7|RNF31_MOUSE RING finger protein 31 OS=Mus musculus GN=...    29   8.4  
sp|Q99J85|NPTXR_MOUSE Neuronal pentraxin receptor OS=Mus musculu...    29   8.4  
sp|P51611|HCFC1_MESAU Host cell factor OS=Mesocricetus auratus G...    29   8.4  
sp|P04725|GDA5_WHEAT Alpha/beta-gliadin A-V OS=Triticum aestivum...    29   8.4  
sp|Q54YH4|DHKB_DICDI Hybrid signal transduction histidine kinase...    29   8.4  
sp|P24452|CAPG_MOUSE Macrophage-capping protein OS=Mus musculus ...    29   8.4  
sp|Q8C4A5|ASXL3_MOUSE Putative Polycomb group protein ASXL3 OS=M...    29   8.4  

>sp|P70211|DCC_MOUSE Netrin receptor DCC OS=Mus musculus GN=Dcc PE=1
            SV=1
          Length = 1447

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
 Frame = +1

Query: 97   SSSHFFISTNCFNRNGSTRTGRAGSGVTESSPARSIFSPSP----FPACLPFPCLW---S 255
            SSSH+ IS   FN  G       G  + ES+  RSI  P+     +P    FP      S
Sbjct: 788  SSSHYVISLKAFNNAGE------GVPLYESATTRSITDPTDPVDYYPLLDDFPTSGPDVS 841

Query: 256  RPLLQPLPLQIESYGCKFNSFFWSEASLTK 345
             P+L P+ +Q  +   +     W++ S+ K
Sbjct: 842  TPMLPPVGVQAVALTHEAVRVSWADNSVPK 871


>sp|Q556Y7|LYSD_DICDI Lysozyme D OS=Dictyostelium discoideum
           GN=alyD-1 PE=3 SV=1
          Length = 260

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 10/47 (21%)
 Frame = +1

Query: 79  CGLPCSSSSHFFIS----------TNCFNRNGSTRTGRAGSGVTESS 189
           CG PCS+ ++F             T C    GST TG  GS  T +S
Sbjct: 52  CGTPCSAQTYFTADSQRFGCGVTLTICSTSGGSTTTGGTGSAGTSTS 98


>sp|P43146|DCC_HUMAN Netrin receptor DCC OS=Homo sapiens GN=DCC PE=1
            SV=1
          Length = 1447

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
 Frame = +1

Query: 97   SSSHFFISTNCFNRNGSTRTGRAGSGVTESSPARSIFSPSP----FPACLPFPCL---WS 255
            SSSH+ IS   FN  G       G  + ES+  RSI  P+     +P    FP      S
Sbjct: 788  SSSHYVISLKAFNNAGE------GVPLYESATTRSITDPTDPVDYYPLLDDFPTSVPDLS 841

Query: 256  RPLLQPLPLQIESYGCKFNSFFWSEASLTK 345
             P+L P+ +Q  +         W++ S+ K
Sbjct: 842  TPMLPPVGVQAVALTHDAVRVSWADNSVPK 871


>sp|Q8N1L1|CV037_HUMAN Putative uncharacterized protein C22orf37
           OS=Homo sapiens GN=C22orf37 PE=2 SV=1
          Length = 170

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 17/124 (13%)
 Frame = +1

Query: 25  LLARSRASHGLQHKACLFCGLPCSS--SSHFFIST--NCFNRNGSTRTGRAGSGVTESSP 192
           L AR R   G Q    ++  LP  +   + F  ++  +    +G+ RT    S ++  SP
Sbjct: 29  LCARERGVRGTQPCPRIYLRLPAQNCEETRFCCASPGSVVLGHGAPRTASPPSALSHPSP 88

Query: 193 ARSI-FSPSPFPACLPFP------------CLWSRPLLQPLPLQIESYGCKFNSFFWSEA 333
              + FSP P P+ L  P            CL S  L        ES GC +NS  WS +
Sbjct: 89  LEGLSFSPFP-PSVLSHPSPPEGLSFSLFHCLCSGKLS-------ESPGCFWNSLGWSFS 140

Query: 334 SLTK 345
            LT+
Sbjct: 141 VLTE 144


>sp|P47777|CD59_SAISC CD59 glycoprotein OS=Saimiri sciureus GN=CD59
           PE=2 SV=1
          Length = 131

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 19/53 (35%), Positives = 22/53 (41%)
 Frame = +1

Query: 19  G*LLARSRASHGLQHKACLFCGLPCSSSSHFFISTNCFNRNGSTRTGRAGSGV 177
           G LL  +   H      C  C LP   S     STNC +   S    +AGSGV
Sbjct: 11  GLLLVLAVFCHSGNSLQCYSCPLPTMESMECTASTNCTSNLDSCLIAKAGSGV 63


>sp|Q59MJ2|MCH1_CANAL Probable transporter MCH1 OS=Candida albicans
           GN=MCH1 PE=3 SV=1
          Length = 436

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 16/74 (21%)
 Frame = +2

Query: 164 QALALQNHRQHAVSFHHRPS---LLASLSLAFGPVLSFNPCLS-------------KSRV 295
           ++L   NHRQ  VSF   PS   LL SL L  GP+ S+   LS             +  +
Sbjct: 238 RSLEPPNHRQRFVSFVKDPSAWILLVSLILNIGPMESYQNNLSSILKHTNGADLPNQVSI 297

Query: 296 MAANSIASSGAKLL 337
           MAA   +S+GA+LL
Sbjct: 298 MAA---SSTGARLL 308


>sp|P02836|HMEN_DROME Segmentation polarity homeobox protein
           engrailed OS=Drosophila melanogaster GN=en PE=1 SV=2
          Length = 552

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = +1

Query: 94  SSSSHFFISTNCFNRNGSTRTGRAGSGVTESSPARSIFSPSPFP 225
           SSSS    + +  N + S+R G +GSGV  SSP      P P P
Sbjct: 350 SSSSGCSSAASSLNSSPSSRLGASGSGVNASSP-----QPQPIP 388


>sp|Q5RCR9|CSTP1_PONAB Uncharacterized metallophosphoesterase CSTP1
           OS=Pongo abelii GN=CSTP1 PE=2 SV=1
          Length = 314

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 137 ETEAQGLEEQ-ALALQNHRQHAVSFHHRPSLLASL 238
           + + Q L+EQ ++A Q H QHA+ F H P  L S+
Sbjct: 179 QAQDQWLDEQLSIARQRHCQHAIIFQHIPLFLESI 213


>sp|Q9BRF8|CSTP1_HUMAN Uncharacterized metallophosphoesterase CSTP1
           OS=Homo sapiens GN=CSTP1 PE=1 SV=2
          Length = 314

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 137 ETEAQGLEEQ-ALALQNHRQHAVSFHHRPSLLASL 238
           + + Q L+EQ ++A Q H QHA+ F H P  L S+
Sbjct: 179 QAQDQWLDEQLSIARQRHCQHAIVFQHIPLFLESI 213


>sp|Q9DA04|TMM89_MOUSE Transmembrane protein 89 OS=Mus musculus
           GN=Tmem89 PE=2 SV=2
          Length = 169

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 211 PSPFPACLPFPCL-WSRPLLQPLPLQIESYGCKFNS 315
           PS F   +P P   WSRPL   + L ++ +GC+ NS
Sbjct: 9   PSLFLLVMPVPSQGWSRPLWYQVGLDLQPWGCQPNS 44
tr_hit_id A9S2A4
Definition tr|A9S2A4|A9S2A4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 133
Score (bit) 47.4
E-value 0.0004
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919935|Adiantum capillus-veneris mRNA, clone:
YMU001_000130_H03.
         (418 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9S2A4|A9S2A4_PHYPA Predicted protein OS=Physcomitrella paten...    47   4e-04
tr|Q17M37|Q17M37_AEDAE Putative uncharacterized protein OS=Aedes...    37   0.49 
tr|B6KBE5|B6KBE5_TOXGO 2OG-Fe(II) oxygenase family oxidoreductas...    37   0.64 
tr|B0WEK8|B0WEK8_CULQU Putative uncharacterized protein OS=Culex...    36   0.83 
tr|A9WDB2|A9WDB2_CHLAA Response regulator receiver OS=Chloroflex...    35   1.9  
tr|B2QP76|B2QP76_9CHLR Adenylate/guanylate cyclase with GAF sens...    35   1.9  
tr|B3MS41|B3MS41_DROAN GF20874 OS=Drosophila ananassae GN=GF2087...    35   1.9  
tr|B4M079|B4M079_DROVI GJ23193 OS=Drosophila virilis GN=GJ23193 ...    33   5.4  
tr|Q0V1I0|Q0V1I0_PHANO Putative uncharacterized protein OS=Phaeo...    33   5.4  
tr|Q4DMK6|Q4DMK6_TRYCR Putative uncharacterized protein OS=Trypa...    33   7.0  
tr|B4LL59|B4LL59_DROVI GJ22288 OS=Drosophila virilis GN=GJ22288 ...    33   7.0  
tr|B5DX84|B5DX84_DROPS GA27565 OS=Drosophila pseudoobscura pseud...    33   9.2  
tr|B4GLK3|B4GLK3_DROPE GL12588 OS=Drosophila persimilis GN=GL125...    33   9.2  

>tr|A9S2A4|A9S2A4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHR2a PE=4 SV=1
          Length = 528

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 47/133 (35%), Positives = 61/133 (45%), Gaps = 6/133 (4%)
 Frame = +2

Query: 29  LRDLELLMDYNTKLVXXXXXXXXXXXXXXXLPIASTETEAQGLEEQALALQNHRQHAVSF 208
           L DLEL++D N                      A+T  E +  EE+A+A +     A SF
Sbjct: 7   LDDLELILDRNLHRALAASRTNAPAPPWTNSGAAATGAEVEDDEEEAVASKEEVADAASF 66

Query: 209 HHRPSLLASLSLAFGPVLSFNPCLSKSRVMAANS------IASSGAKLLSQKKCISPTPV 370
            +     ASLSLA   VL+ +  LSK+ V+   S       A SGA + SQKK  SP PV
Sbjct: 67  GNPLPSAASLSLALNSVLTSSLILSKNNVVPQASQRGGVGPAISGA-VPSQKKSHSPVPV 125

Query: 371 MPAISAATTYLDM 409
           M A S     LD+
Sbjct: 126 M-ASSKVQVALDI 137


>tr|Q17M37|Q17M37_AEDAE Putative uncharacterized protein OS=Aedes
           aegypti GN=AAEL001147 PE=4 SV=1
          Length = 2386

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 11/94 (11%)
 Frame = +2

Query: 125 IASTETEAQGLEEQALALQNHRQHAVSFHHRPSLLASLSLAFGPVLSFNPCLSKSRVMAA 304
           I +TE  A+ +        ++ + A++ H+ P L A L+ AFG + S NP L+  R++A 
Sbjct: 393 IKTTEQNAEKMSNMIRTWIDNYERAITNHYSPELRARLT-AFGKMQSQNPLLNSDRLIAP 451

Query: 305 NSIAS----------SGAKLLSQKKCISP-TPVM 373
            S+ +          +G K+L   + I P TP++
Sbjct: 452 GSVINLAQKCTTVPHAGGKILISIEEIPPKTPII 485


>tr|B6KBE5|B6KBE5_TOXGO 2OG-Fe(II) oxygenase family oxidoreductase,
           putative OS=Toxoplasma gondii ME49 GN=TGME49_059150 PE=4
           SV=1
          Length = 1658

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 9/115 (7%)
 Frame = +1

Query: 67  ACLFCGLPCSSSSHFFISTNCFNRNGSTRTGRAGSGVTESSPARSIFSPSP---FPAC-- 231
           +C  CG   SS++H  +S    +    TR  R+    T  S  R   SPSP     AC  
Sbjct: 391 SCSSCGSDSSSNTHRSLSRLSAS---PTRPARSPCVQTSFSKCRDTASPSPPRKASACAS 447

Query: 232 -LPF---PCLWSRPLLQPLPLQIESYGCKFNSFFWSEASLTKEMY*PYPCDASNI 384
            LP    PC WS     P PL      C+  ++  SE++L        P  ++++
Sbjct: 448 RLPCGLSPCRWSASCFPPEPLSCPDGSCRPVAYARSESTLCSAQRPSAPSSSTSV 502


>tr|B0WEK8|B0WEK8_CULQU Putative uncharacterized protein OS=Culex
            quinquefasciatus GN=CpipJ_CPIJ005719 PE=4 SV=1
          Length = 3080

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
 Frame = +2

Query: 125  IASTETEAQGLEEQALALQNHRQHAVSFHHRPSLLASLSLAFGPVLSFNPCLSKSRVMAA 304
            + +TE  A+ +        ++ + A++ H+ P L A L  AFG + S NP L+  R++ A
Sbjct: 1094 VKTTEQNAEKMSNMIRTWIDNYERAITNHYSPELRARLQ-AFGKMQSQNPLLNSDRLIPA 1152

Query: 305  NSIAS----------SGAKLLSQKKCISP-TPVM 373
             S+ +          +G K+L     I P TP++
Sbjct: 1153 ASVTNLMQKCTTVPHAGGKILISTGDIEPKTPII 1186


>tr|A9WDB2|A9WDB2_CHLAA Response regulator receiver OS=Chloroflexus
           aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)
           GN=Caur_1862 PE=4 SV=1
          Length = 981

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 24/81 (29%), Positives = 40/81 (49%)
 Frame = +2

Query: 176 LQNHRQHAVSFHHRPSLLASLSLAFGPVLSFNPCLSKSRVMAANSIASSGAKLLSQKKCI 355
           ++N R + +    R +L A L  A  P+L  +P   ++R++ ANS A S  ++  +    
Sbjct: 631 VENARLYQIVNDERSTLNAILQSATDPILLIDP---QARLLLANSAALSRLQIDQKTHYG 687

Query: 356 SPTPVMPAISAATTYLDMEGA 418
            P    PA+ A    LD EG+
Sbjct: 688 QPVDQFPALRAILPALDQEGS 708


>tr|B2QP76|B2QP76_9CHLR Adenylate/guanylate cyclase with GAF
           sensor(S) OS=Chloroflexus sp. Y-400-fl
           GN=Chy400DRAFT_2791 PE=4 SV=1
          Length = 981

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 24/81 (29%), Positives = 40/81 (49%)
 Frame = +2

Query: 176 LQNHRQHAVSFHHRPSLLASLSLAFGPVLSFNPCLSKSRVMAANSIASSGAKLLSQKKCI 355
           ++N R + +    R +L A L  A  P+L  +P   ++R++ ANS A S  ++  +    
Sbjct: 631 VENARLYQIVNDERSTLNAILQSATDPILLIDP---QARLLLANSAALSRLQIDQKTHYG 687

Query: 356 SPTPVMPAISAATTYLDMEGA 418
            P    PA+ A    LD EG+
Sbjct: 688 QPVDQFPALRAILPALDQEGS 708


>tr|B3MS41|B3MS41_DROAN GF20874 OS=Drosophila ananassae GN=GF20874
           PE=4 SV=1
          Length = 1186

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = +1

Query: 118 STNCFNRNGSTRTGRAGSGVTESSPARSIFSPSPFPA 228
           S NCF+ NGS+   R+GSG   S+ A  +  PS  PA
Sbjct: 560 SVNCFSGNGSSSGNRSGSGSGSSNSASPLSPPSGAPA 596


>tr|B4M079|B4M079_DROVI GJ23193 OS=Drosophila virilis GN=GJ23193
           PE=4 SV=1
          Length = 1519

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
 Frame = +1

Query: 118 STNCFNRNGSTRTGRAGSGVTESSP-------ARSIFSPSPFPACLPFPCLWSRPLLQPL 276
           ++N  N++G++R  +  +G T+ +        A S   P+P PA +P P     P   PL
Sbjct: 289 TSNSNNKSGNSRPAQETAGATQPAAQKPTGVVATSTSMPTPMPAPMPTPMPAPMPTPMPL 348

Query: 277 PLQIES 294
           P+ + S
Sbjct: 349 PMPMPS 354


>tr|Q0V1I0|Q0V1I0_PHANO Putative uncharacterized protein
            OS=Phaeosphaeria nodorum GN=SNOG_02134 PE=3 SV=2
          Length = 4118

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 212  HRPSLLASLSLAFGPVLSFNPCLSKSRVMAANSIASSGA 328
            HRPS+LAS ++A   +++  PC    R M +  +A  GA
Sbjct: 1559 HRPSVLASCNVANEDIVAIRPCTPLQRGMISQMLAKEGA 1597


>tr|Q4DMK6|Q4DMK6_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053504021.140 PE=4 SV=1
          Length = 788

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +1

Query: 88  PCSSSSHFFISTNCFNRNGSTRTGRAGSGVTESSPARSIFS 210
           P ++++   IS++  N NGST+ G AG G   ++P R  FS
Sbjct: 503 PIAAAASATISSSNANNNGSTQAGSAGGGAQAAAPNRLRFS 543