NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919949
Clone id YMU001_000131_B01
Library
Length 318
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000131_B01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTGGAAGAATTCGCGGCCGCGAATTGAAAGATTTGATGCATGATCGTTATCATCTTGCCA
ACATTACAAGCGCCTTTCATGTAAACCAATGCCTTGTATGGGTCAAAACGTGCACAGTAG
CTGATGAATACAAATACTCAATTGCTTCAACATCAATCGCAACACATCCCTACTCTCACA
CTTTACAGCAAAGGTGTTTCATTCCAACCTGAAAGATACTACCCCTCAAACTTGATTTAC
GATCAAGGGATACAGTTTTTGTGCCCTTGTCGATGATGCAACCTCCTCTATAGTAGAGTT
TTAGAAAGAAGTTACATA
■■Homology search results ■■ -
sp_hit_id A6QR00
Definition sp|A6QR00|ZN526_BOVIN Zinc finger protein 526 OS=Bos taurus
Align length 35
Score (bit) 30.0
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919949|Adiantum capillus-veneris mRNA, clone:
YMU001_000131_B01.
         (293 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A6QR00|ZN526_BOVIN Zinc finger protein 526 OS=Bos taurus GN=Z...    30   3.7  
sp|P45546|YHFT_ECOLI Uncharacterized protein yhfT OS=Escherichia...    30   4.8  
sp|P61460|DEPD5_MOUSE DEP domain-containing protein 5 OS=Mus mus...    29   6.3  
sp|O75140|DEPD5_HUMAN DEP domain-containing protein 5 OS=Homo sa...    29   6.3  
sp|Q06051|YL400_YEAST Putative uncharacterized protein YLR400W O...    29   8.2  
sp|Q8R553|CSTN3_RAT Calsyntenin-3 OS=Rattus norvegicus GN=Clstn3...    29   8.2  
sp|Q5R9Q9|CSTN3_PONAB Calsyntenin-3 OS=Pongo abelii GN=CLSTN3 PE...    29   8.2  
sp|Q99JH7|CSTN3_MOUSE Calsyntenin-3 OS=Mus musculus GN=Clstn3 PE...    29   8.2  
sp|Q9BQT9|CSTN3_HUMAN Calsyntenin-3 OS=Homo sapiens GN=CLSTN3 PE...    29   8.2  
sp|Q0VCN6|CSTN3_BOVIN Calsyntenin-3 OS=Bos taurus GN=CLSTN3 PE=2...    29   8.2  

>sp|A6QR00|ZN526_BOVIN Zinc finger protein 526 OS=Bos taurus
           GN=ZNF526 PE=2 SV=1
          Length = 677

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = +3

Query: 96  LMNTNTQLLQHQSQHIPTLT----LYSKGVSFQPE 188
           L NT  ++L HQ QH+PT+T    L ++    +PE
Sbjct: 65  LYNTLEEVLSHQEQHVPTVTEEEALTTQDTGLEPE 99


>sp|P45546|YHFT_ECOLI Uncharacterized protein yhfT OS=Escherichia
           coli (strain K12) GN=yhfT PE=4 SV=2
          Length = 434

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +1

Query: 103 IQILNCFNINRNTSLLSHFTAKVFHSNLKDTTPQT*FTIKGY 228
           IQI+    +   TSLL+H +A VFH  ++   PQ    I+GY
Sbjct: 5   IQIIVVACLTGMTSLLAHRSAAVFHDGIRPILPQ---LIEGY 43


>sp|P61460|DEPD5_MOUSE DEP domain-containing protein 5 OS=Mus musculus
            GN=Depdc5 PE=2 SV=1
          Length = 1527

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = +3

Query: 24   IILPTLQAPFM*TNALYGSK-RAQ*LMNTNTQ-LLQHQSQHIPTLTLYSKGVSFQPERYY 197
            +++P L+ PF   + LYG   RAQ  +  N   LL+  S+H+          SF+PE Y+
Sbjct: 1339 LLVPVLEGPFALPSYLYGDPLRAQLFIPLNLSCLLKEGSEHLFD--------SFEPETYW 1390

Query: 198  PSNLIYDQGI 227
                ++ + I
Sbjct: 1391 DRMHLFQEAI 1400


>sp|O75140|DEPD5_HUMAN DEP domain-containing protein 5 OS=Homo sapiens
            GN=DEPDC5 PE=2 SV=1
          Length = 1572

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = +3

Query: 24   IILPTLQAPFM*TNALYGSK-RAQ*LMNTNTQ-LLQHQSQHIPTLTLYSKGVSFQPERYY 197
            +++P L+ PF   + LYG   RAQ  +  N   LL+  S+H+          SF+PE Y+
Sbjct: 1384 LLVPVLEGPFALPSYLYGDPLRAQLFIPLNISCLLKEGSEHLFD--------SFEPETYW 1435

Query: 198  PSNLIYDQGI 227
                ++ + I
Sbjct: 1436 DRMHLFQEAI 1445


>sp|Q06051|YL400_YEAST Putative uncharacterized protein YLR400W
           OS=Saccharomyces cerevisiae GN=YLR400W PE=5 SV=1
          Length = 157

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +3

Query: 99  MNTNTQLLQHQSQHIPTLTLYSKGVSFQPERYYPSNLIYD 218
           + T+T  L+    HIP L L  K       R YPS++IYD
Sbjct: 85  LGTHTSRLKLTPVHIPILVLQRKN-----NRAYPSDMIYD 119


>sp|Q8R553|CSTN3_RAT Calsyntenin-3 OS=Rattus norvegicus GN=Clstn3
           PE=2 SV=1
          Length = 957

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 144 PTLTLYSKGVSFQPERYYPSNLIY 215
           PT+TLY+ G+SF P   + + LI+
Sbjct: 457 PTVTLYTDGISFDPALIHDNGLIH 480


>sp|Q5R9Q9|CSTN3_PONAB Calsyntenin-3 OS=Pongo abelii GN=CLSTN3 PE=2
           SV=1
          Length = 956

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 144 PTLTLYSKGVSFQPERYYPSNLIY 215
           PT+TLY+ G+SF P   + + LI+
Sbjct: 457 PTVTLYTDGISFDPALIHDNGLIH 480


>sp|Q99JH7|CSTN3_MOUSE Calsyntenin-3 OS=Mus musculus GN=Clstn3 PE=1
           SV=1
          Length = 956

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 144 PTLTLYSKGVSFQPERYYPSNLIY 215
           PT+TLY+ G+SF P   + + LI+
Sbjct: 457 PTVTLYTDGISFDPALIHDNGLIH 480


>sp|Q9BQT9|CSTN3_HUMAN Calsyntenin-3 OS=Homo sapiens GN=CLSTN3 PE=1
           SV=1
          Length = 956

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 144 PTLTLYSKGVSFQPERYYPSNLIY 215
           PT+TLY+ G+SF P   + + LI+
Sbjct: 457 PTVTLYTDGISFDPALIHDNGLIH 480


>sp|Q0VCN6|CSTN3_BOVIN Calsyntenin-3 OS=Bos taurus GN=CLSTN3 PE=2
           SV=2
          Length = 957

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 144 PTLTLYSKGVSFQPERYYPSNLIY 215
           PT+TLY+ G+SF P   + + LI+
Sbjct: 457 PTVTLYADGISFDPALIHDNGLIH 480
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919949|Adiantum capillus-veneris mRNA, clone:
YMU001_000131_B01.
         (293 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******