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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919959
Clone id YMU001_000131_C04
Library
Length 203
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000131_C04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TCTTCGCTGGTCCCTTTTCTGATTCAGCCGTAGCTTTGTCTTTCGACTTGCGAGGAAAAC
GTCTTTTCCATTTCTTCGCTGGTCCTTTGTCTGATTCAGCCGTAGCTTTGTCTTTCCCTG
CGTTGGCTGACTCCTGAGTCCCTTTCGGAGCCTCATTGGGAACATACTTCTTCGCTGAAT
TTTTCTTGCTTGATCTTGCCTTG
■■Homology search results ■■ -
sp_hit_id Q9VYB0
Definition sp|Q9VYB0|BTHD_DROME Selenoprotein BthD OS=Drosophila melanogaster
Align length 45
Score (bit) 32.0
E-value 0.99
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919959|Adiantum capillus-veneris mRNA, clone:
YMU001_000131_C04.
         (203 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9VYB0|BTHD_DROME Selenoprotein BthD OS=Drosophila melanogast...    32   0.99 
sp|Q08864|H11_VOLCA Histone H1-I OS=Volvox carteri GN=H1-I PE=2 ...    32   1.3  
sp|Q14093|CYLC2_HUMAN Cylicin-2 OS=Homo sapiens GN=CYLC2 PE=2 SV=1     32   1.3  
sp|Q4IBS2|MAK5_GIBZE ATP-dependent RNA helicase MAK5 OS=Gibberel...    30   2.9  
sp|Q8N309|LRC43_HUMAN Leucine-rich repeat-containing protein 43 ...    30   2.9  
sp|Q28092|CYLC2_BOVIN Cylicin-2 OS=Bos taurus GN=CYLC2 PE=1 SV=1       30   2.9  
sp|Q9VFK6|SETD8_DROME Histone-lysine N-methyltransferase pr-set7...    30   3.8  
sp|B2GUV7|IF2P_RAT Eukaryotic translation initiation factor 5B O...    30   3.8  
sp|Q5EAW9|TAF3_XENLA Transcription initiation factor TFIID subun...    30   4.9  
sp|Q05D44|IF2P_MOUSE Eukaryotic translation initiation factor 5B...    30   4.9  
sp|A7EMM3|NST1_SCLS1 Stress response protein nst1 OS=Sclerotinia...    29   6.4  
sp|A6RW62|NST1_BOTFB Stress response protein nst1 OS=Botryotinia...    29   6.4  
sp|Q9R172|NOTC3_RAT Neurogenic locus notch homolog protein 3 OS=...    29   6.4  
sp|Q9UM47|NOTC3_HUMAN Neurogenic locus notch homolog protein 3 O...    29   6.4  
sp|Q9UKJ3|GPTC8_HUMAN G patch domain-containing protein 8 OS=Hom...    29   6.4  

>sp|Q9VYB0|BTHD_DROME Selenoprotein BthD OS=Drosophila melanogaster
           GN=BthD PE=1 SV=5
          Length = 249

 Score = 32.0 bits (71), Expect = 0.99
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = -2

Query: 148 PKGTQESANAGKDKATAESDKGPAKKWKRRFPRKSKDKATAESEK 14
           PK  ++ A A + +     DK P+ + ++R  R S D+ATA +++
Sbjct: 203 PKAQKKQAKASESQEEVAEDKPPSSQKRKRTTRSSTDEATAGAKR 247


>sp|Q08864|H11_VOLCA Histone H1-I OS=Volvox carteri GN=H1-I PE=2
           SV=3
          Length = 261

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -2

Query: 154 EAPKGTQESANAGKDKATAE---SDKGPAKKWKRRFPRKSKDKATAESEKGPAK 2
           E PK      +AGK KAT +   + K PAKK  +  P+K+     A  +K PAK
Sbjct: 195 EKPKKAATPKSAGKKKATPKPKAAPKSPAKKDAK--PKKATPSKKAAPKKAPAK 246


>sp|Q14093|CYLC2_HUMAN Cylicin-2 OS=Homo sapiens GN=CYLC2 PE=2 SV=1
          Length = 348

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
 Frame = -2

Query: 145 KGTQESANAGKDKAT-AESDKGPAKKWKRRFPR---KSKDKAT-AESEKG 11
           K  ++ A  GKD AT +E +KG AKK  ++  +   K KD AT +E EKG
Sbjct: 162 KKGKKDAEKGKDSATESEDEKGGAKKDNKKDKKDSNKGKDSATESEGEKG 211


>sp|Q4IBS2|MAK5_GIBZE ATP-dependent RNA helicase MAK5 OS=Gibberella
           zeae GN=MAK5 PE=3 SV=1
          Length = 783

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 142 GTQESANAGKDKATAESDKGPAKKWKRRFPRKSKDKATAESEK 14
           G  +S   G D+A AES K   K   +  P++ ++KA  E+ K
Sbjct: 112 GDIDSGEVGSDQAGAESKKPQGKNKGKNEPKEGQEKADQETNK 154


>sp|Q8N309|LRC43_HUMAN Leucine-rich repeat-containing protein 43
           OS=Homo sapiens GN=LRRC43 PE=2 SV=2
          Length = 656

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 160 PNEAPKGTQESANAGKDK-ATAESDKGPAKKWKRRFPRKSKDK 35
           P  A KG  E    GK+K  T + +K PAK+WK    +K   K
Sbjct: 511 PLSAKKGKGEKDKKGKEKDRTGKGEKEPAKEWKVLKKKKEPPK 553


>sp|Q28092|CYLC2_BOVIN Cylicin-2 OS=Bos taurus GN=CYLC2 PE=1 SV=1
          Length = 488

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
 Frame = -2

Query: 145 KGTQESANAGKDKAT-AESDKGPAK---KWKRRFPRKSKDKAT-AESEKGPAK 2
           K  ++ +  GK+ AT +E +KG AK   K  ++  +K K+ AT +E EKG AK
Sbjct: 245 KKGKKGSKKGKESATESEGEKGDAKKDDKKGKKGSKKGKESATESEGEKGDAK 297



 Score = 30.4 bits (67), Expect = 2.9
 Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
 Frame = -2

Query: 145 KGTQESANAGKDKAT-AESDKGPAK---KWKRRFPRKSKDKAT-AESEKGPAK 2
           K  ++ +  GK+ AT +E +KG AK   K  ++  +K K+ AT +E EKG AK
Sbjct: 273 KKGKKGSKKGKESATESEGEKGDAKKDDKKGKKGSKKGKESATESEGEKGDAK 325



 Score = 30.4 bits (67), Expect = 2.9
 Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
 Frame = -2

Query: 145 KGTQESANAGKDKAT-AESDKGPAK---KWKRRFPRKSKDKAT-AESEKGPAK 2
           K  ++ +  GK+ AT +E +KG AK   K  ++  +K K+ AT +E EKG AK
Sbjct: 301 KKGKKGSKKGKESATESEGEKGDAKKDDKKGKKGSKKGKESATESEGEKGDAK 353



 Score = 29.3 bits (64), Expect = 6.4
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -2

Query: 151 APKGTQESANAGKDKATAESDKGPAKKWKRRFPRKSKDKATA---ESEKGPAK 2
           A K  + S    +  + + S+KG AKK  ++  + SK K +A   E EKG AK
Sbjct: 189 AKKDRKGSKKGKETPSDSGSEKGDAKKDSKKSKKDSKGKESATESEGEKGDAK 241



 Score = 28.9 bits (63), Expect = 8.4
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
 Frame = -2

Query: 145 KGTQESANAGKDKAT-AESDKGPAKKWKRRFPRKSK----DKATAESEKGPAK 2
           K  ++ +  GK+ AT +E +KG AKK  ++  + SK      + AE +KG AK
Sbjct: 329 KKGKKGSKKGKESATESEGEKGDAKKDDKKGKKGSKKGKESDSKAEGDKGDAK 381


>sp|Q9VFK6|SETD8_DROME Histone-lysine N-methyltransferase pr-set7
           OS=Drosophila melanogaster GN=pr-set7 PE=1 SV=2
          Length = 691

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 19/48 (39%), Positives = 23/48 (47%)
 Frame = -2

Query: 145 KGTQESANAGKDKATAESDKGPAKKWKRRFPRKSKDKATAESEKGPAK 2
           K  +E  N  K  ATA S+K   K   +  P KSK K+     KGP K
Sbjct: 462 KAAEERENQNKAPATANSNKAGMKTMLKPAPVKSKTKS-----KGPTK 504


>sp|B2GUV7|IF2P_RAT Eukaryotic translation initiation factor 5B
           OS=Rattus norvegicus GN=Eif5b PE=1 SV=1
          Length = 1216

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
 Frame = -2

Query: 145 KGTQESANAGKDK----ATAESD-KGPAKKWKRRFPRKSKDKATAESEKGPAK 2
           +GT ++  A ++K    AT E D +G  KK  ++  +  KD    E +KGP+K
Sbjct: 285 RGTPDAGAASEEKGDIAATLEDDNEGDKKKKDKKKKKTEKDDKEKEKKKGPSK 337


>sp|Q5EAW9|TAF3_XENLA Transcription initiation factor TFIID subunit
           3 OS=Xenopus laevis GN=taf3 PE=2 SV=1
          Length = 845

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -2

Query: 157 NEAPKGTQESANAGK-DKATAESDKGPAKKWKRRFPRKSKDKATAESEKGPA 5
           NE    +++  N GK DK   +  K   +K K+   +K KDK   E  K P+
Sbjct: 522 NEIDSKSKQKENCGKKDKEKHKDKKKDKEKGKKDKDKKGKDKTKEEKMKSPS 573


>sp|Q05D44|IF2P_MOUSE Eukaryotic translation initiation factor 5B
           OS=Mus musculus GN=Eif5b PE=1 SV=2
          Length = 1216

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
 Frame = -2

Query: 145 KGTQESANAGKDK-----ATAESDKGPAKKWKRRFPRKSKDKATAESEKGPAK 2
           +GT ++  A ++K     A  + ++G  KK  ++  +  KD+   E +KGP+K
Sbjct: 285 RGTPDTGAASEEKGDTAAALEDDNEGDKKKKDKKKKKTEKDEKEKEKKKGPSK 337
tr_hit_id Q7XM53
Definition tr|Q7XM53|Q7XM53_ORYSJ OSJNBb0018J12.6 protein (Putative uncharacterized protein) OS=Oryza sativa subsp. japonica
Align length 49
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919959|Adiantum capillus-veneris mRNA, clone:
YMU001_000131_C04.
         (203 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7XM53|Q7XM53_ORYSJ OSJNBb0018J12.6 protein (Putative unchara...    36   1.1  
tr|Q0JEK3|Q0JEK3_ORYSJ Os04g0253000 protein (Fragment) OS=Oryza ...    36   1.1  
tr|Q01M78|Q01M78_ORYSA H0616A11.1 protein OS=Oryza sativa GN=H06...    36   1.1  
tr|B7EMI6|B7EMI6_ORYSJ cDNA clone:J033052L06, full insert sequen...    36   1.1  
tr|A2XR29|A2XR29_ORYSI Putative uncharacterized protein OS=Oryza...    36   1.1  
tr|B3T422|B3T422_9CREN Putative uncharacterized protein OS=uncul...    36   1.1  
tr|Q4R7Q3|Q4R7Q3_MACFA Testis cDNA, clone: QtsA-14662, similar t...    35   1.4  
tr|A2Z1E3|A2Z1E3_ORYSI Putative uncharacterized protein OS=Oryza...    34   3.2  
tr|A6C5M8|A6C5M8_9PLAN Putative uncharacterized protein OS=Planc...    34   4.1  
tr|B4MRD6|B4MRD6_DROWI GK15777 OS=Drosophila willistoni GN=GK157...    33   5.4  
tr|A8NTB3|A8NTB3_COPC7 Putative uncharacterized protein OS=Copri...    33   5.4  
tr|B4ETA4|B4ETA4_PROMH MutT/NUDIX family protein OS=Proteus mira...    33   9.2  
tr|Q16KV5|Q16KV5_AEDAE Putative uncharacterized protein OS=Aedes...    33   9.2  
tr|B7Q2T6|B7Q2T6_IXOSC Scaffold attachment factor B1, putative (...    33   9.2  

>tr|Q7XM53|Q7XM53_ORYSJ OSJNBb0018J12.6 protein (Putative
           uncharacterized protein) OS=Oryza sativa subsp. japonica
           GN=OSJNBb0018J12.6 PE=3 SV=1
          Length = 188

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 20/49 (40%), Positives = 27/49 (55%)
 Frame = -2

Query: 151 APKGTQESANAGKDKATAESDKGPAKKWKRRFPRKSKDKATAESEKGPA 5
           APK  +++A   KD A A+  K PA   KR+ P K   K  A+ +K PA
Sbjct: 119 APKPAKDAAKPKKDAAAAKPKKAPAAGTKRKAPEK---KVVAKPKKSPA 164


>tr|Q0JEK3|Q0JEK3_ORYSJ Os04g0253000 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os04g0253000 PE=3 SV=1
          Length = 218

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 20/49 (40%), Positives = 27/49 (55%)
 Frame = -2

Query: 151 APKGTQESANAGKDKATAESDKGPAKKWKRRFPRKSKDKATAESEKGPA 5
           APK  +++A   KD A A+  K PA   KR+ P K   K  A+ +K PA
Sbjct: 149 APKPAKDAAKPKKDAAAAKPKKAPAAGTKRKAPEK---KVVAKPKKSPA 194


>tr|Q01M78|Q01M78_ORYSA H0616A11.1 protein OS=Oryza sativa
           GN=H0616A11.1 PE=3 SV=1
          Length = 188

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 20/49 (40%), Positives = 27/49 (55%)
 Frame = -2

Query: 151 APKGTQESANAGKDKATAESDKGPAKKWKRRFPRKSKDKATAESEKGPA 5
           APK  +++A   KD A A+  K PA   KR+ P K   K  A+ +K PA
Sbjct: 119 APKPAKDAAKPKKDAAAAKPKKAPAAGTKRKAPEK---KVVAKPKKSPA 164


>tr|B7EMI6|B7EMI6_ORYSJ cDNA clone:J033052L06, full insert sequence
           OS=Oryza sativa subsp. japonica PE=2 SV=1
          Length = 191

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 20/49 (40%), Positives = 27/49 (55%)
 Frame = -2

Query: 151 APKGTQESANAGKDKATAESDKGPAKKWKRRFPRKSKDKATAESEKGPA 5
           APK  +++A   KD A A+  K PA   KR+ P K   K  A+ +K PA
Sbjct: 122 APKPAKDAAKPKKDAAAAKPKKAPAAGTKRKAPEK---KVVAKPKKSPA 167


>tr|A2XR29|A2XR29_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_15099 PE=3 SV=1
          Length = 188

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 20/49 (40%), Positives = 27/49 (55%)
 Frame = -2

Query: 151 APKGTQESANAGKDKATAESDKGPAKKWKRRFPRKSKDKATAESEKGPA 5
           APK  +++A   KD A A+  K PA   KR+ P K   K  A+ +K PA
Sbjct: 119 APKPAKDAAKPKKDAAAAKPKKAPAAGTKRKAPEK---KVVAKPKKSPA 164


>tr|B3T422|B3T422_9CREN Putative uncharacterized protein
           OS=uncultured marine crenarchaeote HF4000_ANIW133K13
           GN=ALOHA_HF4000ANIW133K13ctg1g6 PE=4 SV=1
          Length = 272

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 25/55 (45%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -2

Query: 160 PNEAPKG--TQESANAGKDKATAESDKGPAKKWKRRFPRKSKDKATAESEKGPAK 2
           P E  K   T+  A A K KA A+  K PAK  K++ P K K KA A+ +K PAK
Sbjct: 217 PKETKKRLITKHKAPAKKKKAPAKKKKAPAK--KKKAPAKKK-KAPAKKKKAPAK 268


>tr|Q4R7Q3|Q4R7Q3_MACFA Testis cDNA, clone: QtsA-14662, similar to
           human cylicin, basic protein of sperm head cytoskeleton
           2(CYLC2), OS=Macaca fascicularis PE=2 SV=1
          Length = 371

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
 Frame = -2

Query: 163 VPNEAPKGTQESANAGKDKAT-AESDKGPAK---KWKRRFPRKSKDKAT-AESEKGPAK 2
           V  +  K  +++A  GKD AT +E +KG AK   K  ++  +K KD AT +E EKG AK
Sbjct: 156 VAKKDSKKGKKAAEKGKDSATESEDEKGGAKKDDKKDKKDSKKGKDSATESEDEKGSAK 214


>tr|A2Z1E3|A2Z1E3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_31423 PE=4 SV=1
          Length = 226

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -2

Query: 151 APKGTQESANAGKDKATAESDKGPAKKWKRRFPRKSKDKATAESEK 14
           +P+ T  SA A K+KA A+ DK  AKK+K       KD +     K
Sbjct: 163 SPEATLVSAEAKKEKARAKKDKAKAKKYKTYLKLMEKDTSNYSEAK 208


>tr|A6C5M8|A6C5M8_9PLAN Putative uncharacterized protein
           OS=Planctomyces maris DSM 8797 GN=PM8797T_18564 PE=4
           SV=1
          Length = 494

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = -2

Query: 133 ESANAGKDKATAESDKGPAKKWKRRFPRKSKDKATAESEKGPA 5
           ES+   +D+  +ESD     K  RR  R+ K + TAES++G A
Sbjct: 358 ESSETDEDEEESESDSEQKPKRSRRRSRRRKSEVTAESDEGEA 400


>tr|B4MRD6|B4MRD6_DROWI GK15777 OS=Drosophila willistoni GN=GK15777
            PE=4 SV=1
          Length = 1467

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = -2

Query: 160  PNEAPKGTQESANAGKDKATAESDKGPAKKWKRRFPRKSKDKATAE 23
            P++A K  ++  + G+D+A  E D  P +K K++  +K KD+   E
Sbjct: 1418 PSKADKKKKKKKHKGEDEAPEEEDAEPVEKEKKKKKKKDKDRDREE 1463