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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919960
Clone id YMU001_000131_C07
Library
Length 224
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000131_C07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATCGGTTCAAGTCCGATCGTCTCCATTCGTATACAGATTAGCATATTAAATAGAAATCCA
ACAGAAAAAAGAGAAAAAACGCTCTCTTTTTCGTGCTCTAGCTACCATCAAACAGTCCTC
CTCGGATAACTCGTCCAATCCGAAAATAGCTATAATATCTTGAAGTTCTTTGTAACGCTG
CAAAGTCTGCTTAACCCTTTATGCCGTCTTGTAATGCTTCTCAC
■■Homology search results ■■ -
sp_hit_id P00826
Definition sp|P00826|ATPB_TOBAC ATP synthase subunit beta, chloroplastic OS=Nicotiana tabacum
Align length 51
Score (bit) 83.6
E-value 3.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919960|Adiantum capillus-veneris mRNA, clone:
YMU001_000131_C07.
         (224 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P00826|ATPB_TOBAC ATP synthase subunit beta, chloroplastic OS...    84   3e-16
sp|Q2VEH0|ATPB_SOLTU ATP synthase subunit beta, chloroplastic OS...    84   3e-16
sp|Q2MI93|ATPB_SOLLC ATP synthase subunit beta, chloroplastic OS...    84   3e-16
sp|Q2MII0|ATPB_SOLBU ATP synthase subunit beta, chloroplastic OS...    84   3e-16
sp|Q33C27|ATPB_NICTO ATP synthase subunit beta, chloroplastic OS...    84   3e-16
sp|Q3C1J5|ATPB_NICSY ATP synthase subunit beta, chloroplastic OS...    84   3e-16
sp|P26531|ATPB_NICSP ATP synthase subunit beta, chloroplastic OS...    84   3e-16
sp|P26530|ATPB_NICRU ATP synthase subunit beta, chloroplastic OS...    84   3e-16
sp|P69370|ATPB_NICPL ATP synthase subunit beta, chloroplastic OS...    84   3e-16
sp|P69369|ATPB_NICBI ATP synthase subunit beta, chloroplastic OS...    84   3e-16
sp|Q8S8W8|ATPB_ATRBE ATP synthase subunit beta, chloroplastic OS...    84   3e-16
sp|Q85FT2|ATPB_CYAME ATP synthase subunit beta, chloroplastic OS...    83   5e-16
sp|Q95AD6|ATPB_WHIBI ATP synthase subunit beta, chloroplastic OS...    82   6e-16
sp|Q0ZJ13|ATPB_VITVI ATP synthase subunit beta, chloroplastic OS...    82   6e-16
sp|Q9XQX2|ATPB_TROAR ATP synthase subunit beta, chloroplastic OS...    82   6e-16
sp|Q2PMV0|ATPB_SOYBN ATP synthase subunit beta, chloroplastic OS...    82   6e-16
sp|Q85V31|ATPB_SCHME ATP synthase subunit beta, chloroplastic OS...    82   6e-16
sp|Q85V50|ATPB_PSECV ATP synthase subunit beta, chloroplastic OS...    82   6e-16
sp|A4GYR7|ATPB_POPTR ATP synthase subunit beta, chloroplastic OS...    82   6e-16
sp|Q95FL8|ATPB_POPTM ATP synthase subunit beta, chloroplastic OS...    82   6e-16
sp|Q14FF0|ATPB_POPAL ATP synthase subunit beta, chloroplastic OS...    82   6e-16
sp|Q09G39|ATPB_PLAOC ATP synthase subunit beta, chloroplastic OS...    82   6e-16
sp|Q06GQ3|ATPB_PIPCE ATP synthase subunit beta, chloroplastic OS...    82   6e-16
sp|Q95AD7|ATPB_PHOTN ATP synthase subunit beta, chloroplastic OS...    82   6e-16
sp|A4GG90|ATPB_PHAVU ATP synthase subunit beta, chloroplastic OS...    82   6e-16
sp|P05037|ATPB_PEA ATP synthase subunit beta, chloroplastic OS=P...    82   6e-16
sp|Q68RZ9|ATPB_PANGI ATP synthase subunit beta, chloroplastic OS...    82   6e-16
sp|Q85V29|ATPB_OTHSI ATP synthase subunit beta, chloroplastic OS...    82   6e-16
sp|Q9MU26|ATPB_NYMOD ATP synthase subunit beta, chloroplastic OS...    82   6e-16
sp|Q6EW72|ATPB_NYMAL ATP synthase subunit beta, chloroplastic OS...    82   6e-16

>sp|P00826|ATPB_TOBAC ATP synthase subunit beta, chloroplastic
           OS=Nicotiana tabacum GN=atpB PE=3 SV=1
          Length = 498

 Score = 83.6 bits (205), Expect = 3e-16
 Identities = 43/51 (84%), Positives = 46/51 (90%)
 Frame = -3

Query: 222 EKHYKTA*RVKQTLQRYKELQDIIAIFGLDELSEEDCLMVARARKRERFFS 70
           E+HY+TA RVKQTLQRYKELQDIIAI GLDELSEED L+VARARK ERF S
Sbjct: 382 EEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLLVARARKIERFLS 432


>sp|Q2VEH0|ATPB_SOLTU ATP synthase subunit beta, chloroplastic
           OS=Solanum tuberosum GN=atpB PE=3 SV=1
          Length = 498

 Score = 83.6 bits (205), Expect = 3e-16
 Identities = 43/51 (84%), Positives = 46/51 (90%)
 Frame = -3

Query: 222 EKHYKTA*RVKQTLQRYKELQDIIAIFGLDELSEEDCLMVARARKRERFFS 70
           E+HY+TA RVKQTLQRYKELQDIIAI GLDELSEED L+VARARK ERF S
Sbjct: 382 EEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLLVARARKIERFLS 432


>sp|Q2MI93|ATPB_SOLLC ATP synthase subunit beta, chloroplastic
           OS=Solanum lycopersicum GN=atpB PE=3 SV=1
          Length = 498

 Score = 83.6 bits (205), Expect = 3e-16
 Identities = 43/51 (84%), Positives = 46/51 (90%)
 Frame = -3

Query: 222 EKHYKTA*RVKQTLQRYKELQDIIAIFGLDELSEEDCLMVARARKRERFFS 70
           E+HY+TA RVKQTLQRYKELQDIIAI GLDELSEED L+VARARK ERF S
Sbjct: 382 EEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLLVARARKIERFLS 432


>sp|Q2MII0|ATPB_SOLBU ATP synthase subunit beta, chloroplastic
           OS=Solanum bulbocastanum GN=atpB PE=3 SV=1
          Length = 498

 Score = 83.6 bits (205), Expect = 3e-16
 Identities = 43/51 (84%), Positives = 46/51 (90%)
 Frame = -3

Query: 222 EKHYKTA*RVKQTLQRYKELQDIIAIFGLDELSEEDCLMVARARKRERFFS 70
           E+HY+TA RVKQTLQRYKELQDIIAI GLDELSEED L+VARARK ERF S
Sbjct: 382 EEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLLVARARKIERFLS 432


>sp|Q33C27|ATPB_NICTO ATP synthase subunit beta, chloroplastic
           OS=Nicotiana tomentosiformis GN=atpB PE=3 SV=1
          Length = 498

 Score = 83.6 bits (205), Expect = 3e-16
 Identities = 43/51 (84%), Positives = 46/51 (90%)
 Frame = -3

Query: 222 EKHYKTA*RVKQTLQRYKELQDIIAIFGLDELSEEDCLMVARARKRERFFS 70
           E+HY+TA RVKQTLQRYKELQDIIAI GLDELSEED L+VARARK ERF S
Sbjct: 382 EEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLLVARARKIERFLS 432


>sp|Q3C1J5|ATPB_NICSY ATP synthase subunit beta, chloroplastic
           OS=Nicotiana sylvestris GN=atpB PE=3 SV=1
          Length = 498

 Score = 83.6 bits (205), Expect = 3e-16
 Identities = 43/51 (84%), Positives = 46/51 (90%)
 Frame = -3

Query: 222 EKHYKTA*RVKQTLQRYKELQDIIAIFGLDELSEEDCLMVARARKRERFFS 70
           E+HY+TA RVKQTLQRYKELQDIIAI GLDELSEED L+VARARK ERF S
Sbjct: 382 EEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLLVARARKIERFLS 432


>sp|P26531|ATPB_NICSP ATP synthase subunit beta, chloroplastic
           OS=Nicotiana sp. GN=atpB PE=3 SV=1
          Length = 498

 Score = 83.6 bits (205), Expect = 3e-16
 Identities = 43/51 (84%), Positives = 46/51 (90%)
 Frame = -3

Query: 222 EKHYKTA*RVKQTLQRYKELQDIIAIFGLDELSEEDCLMVARARKRERFFS 70
           E+HY+TA RVKQTLQRYKELQDIIAI GLDELSEED L+VARARK ERF S
Sbjct: 382 EEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLLVARARKIERFLS 432


>sp|P26530|ATPB_NICRU ATP synthase subunit beta, chloroplastic
           OS=Nicotiana rustica GN=atpB PE=3 SV=1
          Length = 498

 Score = 83.6 bits (205), Expect = 3e-16
 Identities = 43/51 (84%), Positives = 46/51 (90%)
 Frame = -3

Query: 222 EKHYKTA*RVKQTLQRYKELQDIIAIFGLDELSEEDCLMVARARKRERFFS 70
           E+HY+TA RVKQTLQRYKELQDIIAI GLDELSEED L+VARARK ERF S
Sbjct: 382 EEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLLVARARKIERFLS 432


>sp|P69370|ATPB_NICPL ATP synthase subunit beta, chloroplastic
           OS=Nicotiana plumbaginifolia GN=atpB PE=3 SV=1
          Length = 498

 Score = 83.6 bits (205), Expect = 3e-16
 Identities = 43/51 (84%), Positives = 46/51 (90%)
 Frame = -3

Query: 222 EKHYKTA*RVKQTLQRYKELQDIIAIFGLDELSEEDCLMVARARKRERFFS 70
           E+HY+TA RVKQTLQRYKELQDIIAI GLDELSEED L+VARARK ERF S
Sbjct: 382 EEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLLVARARKIERFLS 432


>sp|P69369|ATPB_NICBI ATP synthase subunit beta, chloroplastic
           OS=Nicotiana bigelovii GN=atpB PE=3 SV=1
          Length = 498

 Score = 83.6 bits (205), Expect = 3e-16
 Identities = 43/51 (84%), Positives = 46/51 (90%)
 Frame = -3

Query: 222 EKHYKTA*RVKQTLQRYKELQDIIAIFGLDELSEEDCLMVARARKRERFFS 70
           E+HY+TA RVKQTLQRYKELQDIIAI GLDELSEED L+VARARK ERF S
Sbjct: 382 EEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLLVARARKIERFLS 432
tr_hit_id B2XWL2
Definition tr|B2XWL2|B2XWL2_FAGEA ATP synthase CF1 beta subunit OS=Fagopyrum esculentum subsp. ancestrale
Align length 51
Score (bit) 84.7
E-value 2.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919960|Adiantum capillus-veneris mRNA, clone:
YMU001_000131_C07.
         (224 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B2XWL2|B2XWL2_FAGEA ATP synthase CF1 beta subunit OS=Fagopyru...    85   2e-15
tr|Q95FU2|Q95FU2_COCUV ATP synthase subunit beta (Fragment) OS=C...    84   4e-15
tr|Q95D40|Q95D40_BAUSP ATP synthase subunit beta (Fragment) OS=B...    84   4e-15
tr|Q8HTE2|Q8HTE2_MYOAR ATP synthase subunit beta (Fragment) OS=M...    84   4e-15
tr|Q3ZMI0|Q3ZMI0_9ERIC ATP synthase subunit beta (Fragment) OS=B...    84   4e-15
tr|Q9SCB5|Q9SCB5_SOLLC ATP synthase subunit beta (Fragment) OS=S...    84   5e-15
tr|Q9SC86|Q9SC86_NOLHU ATP synthase subunit beta (Fragment) OS=N...    84   5e-15
tr|Q9MU39|Q9MU39_9ROSI ATP synthase subunit beta (Fragment) OS=M...    84   5e-15
tr|Q9MTX8|Q9MTX8_9MAGN ATP synthase subunit beta (Fragment) OS=S...    84   5e-15
tr|Q9MTX5|Q9MTX5_SOLAR ATP synthase subunit beta (Fragment) OS=S...    84   5e-15
tr|Q9MRN0|Q9MRN0_CRAMA ATP synthase subunit beta (Fragment) OS=C...    84   5e-15
tr|Q9MRK7|Q9MRK7_DUDVI ATP synthase subunit beta (Fragment) OS=D...    84   5e-15
tr|Q9MRB4|Q9MRB4_KALDA ATP synthase subunit beta (Fragment) OS=K...    84   5e-15
tr|Q9GI22|Q9GI22_9MAGN ATP synthase subunit beta (Fragment) OS=C...    84   5e-15
tr|Q95FN8|Q95FN8_NOLHU ATP synthase subunit beta (Fragment) OS=N...    84   5e-15
tr|Q71V35|Q71V35_TOBAC ATP synthase subunit beta (Fragment) OS=N...    84   5e-15
tr|Q69GY3|Q69GY3_SOLTU ATP synthase subunit beta (Fragment) OS=S...    84   5e-15
tr|Q9SC28|Q9SC28_9GENT ATP synthase subunit beta (Fragment) OS=R...    83   6e-15
tr|Q9S6Z0|Q9S6Z0_9SOLA ATP synthase subunit beta (Fragment) OS=P...    83   6e-15
tr|Q9S6Y8|Q9S6Y8_9SOLA ATP synthase subunit beta (Fragment) OS=S...    83   6e-15
tr|Q9MU13|Q9MU13_PLAVR ATP synthase subunit beta (Fragment) OS=P...    83   6e-15
tr|Q9MU02|Q9MU02_9ASTE ATP synthase subunit beta (Fragment) OS=P...    83   6e-15
tr|Q9MRN5|Q9MRN5_9MAGN ATP synthase subunit beta (Fragment) OS=C...    83   6e-15
tr|Q9MRM6|Q9MRM6_9MYRT ATP synthase subunit beta (Fragment) OS=C...    83   6e-15
tr|Q95FT2|Q95FT2_9SOLA ATP synthase subunit beta (Fragment) OS=D...    83   6e-15
tr|Q95FJ0|Q95FJ0_9MAGN ATP synthase subunit beta (Fragment) OS=T...    83   6e-15
tr|Q95FI1|Q95FI1_9ROSA ATP synthase subunit beta (Fragment) OS=Z...    83   6e-15
tr|Q8SLT4|Q8SLT4_9ERIC ATP synthase subunit beta (Fragment) OS=M...    83   6e-15
tr|Q8SLS8|Q8SLS8_9ERIC ATP synthase subunit beta (Fragment) OS=S...    83   6e-15
tr|Q8SLS4|Q8SLS4_CAMSI ATP synthase subunit beta (Fragment) OS=C...    83   6e-15

>tr|B2XWL2|B2XWL2_FAGEA ATP synthase CF1 beta subunit OS=Fagopyrum
           esculentum subsp. ancestrale GN=atpB PE=4 SV=1
          Length = 498

 Score = 84.7 bits (208), Expect = 2e-15
 Identities = 44/51 (86%), Positives = 45/51 (88%)
 Frame = -3

Query: 222 EKHYKTA*RVKQTLQRYKELQDIIAIFGLDELSEEDCLMVARARKRERFFS 70
           E+HYKTA RVKQTLQRYKELQDIIAI GLDELSEED L VARARK ERF S
Sbjct: 382 EEHYKTAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKMERFLS 432


>tr|Q95FU2|Q95FU2_COCUV ATP synthase subunit beta (Fragment)
           OS=Coccoloba uvifera GN=atpB PE=3 SV=1
          Length = 469

 Score = 84.0 bits (206), Expect = 4e-15
 Identities = 44/51 (86%), Positives = 45/51 (88%)
 Frame = -3

Query: 222 EKHYKTA*RVKQTLQRYKELQDIIAIFGLDELSEEDCLMVARARKRERFFS 70
           E+HYKTA RVKQTLQRYKELQDIIAI GLDELSEED L VARARK ERF S
Sbjct: 363 EEHYKTAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLS 413


>tr|Q95D40|Q95D40_BAUSP ATP synthase subunit beta (Fragment)
           OS=Bauhinia sp. GN=atpB PE=3 SV=1
          Length = 470

 Score = 84.0 bits (206), Expect = 4e-15
 Identities = 44/51 (86%), Positives = 45/51 (88%)
 Frame = -3

Query: 222 EKHYKTA*RVKQTLQRYKELQDIIAIFGLDELSEEDCLMVARARKRERFFS 70
           E+HYKTA RVKQTLQRYKELQDIIAI GLDELSEED L VARARK ERF S
Sbjct: 374 EEHYKTAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLS 424


>tr|Q8HTE2|Q8HTE2_MYOAR ATP synthase subunit beta (Fragment)
           OS=Myosotis arvensis GN=atpB PE=3 SV=1
          Length = 489

 Score = 84.0 bits (206), Expect = 4e-15
 Identities = 44/51 (86%), Positives = 45/51 (88%)
 Frame = -3

Query: 222 EKHYKTA*RVKQTLQRYKELQDIIAIFGLDELSEEDCLMVARARKRERFFS 70
           EKHY+TA RVKQTLQRYKELQDIIAI GLDELSEED L VARARK ERF S
Sbjct: 374 EKHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLS 424


>tr|Q3ZMI0|Q3ZMI0_9ERIC ATP synthase subunit beta (Fragment)
           OS=Bruinsmia styracoides GN=atpB PE=3 SV=1
          Length = 492

 Score = 84.0 bits (206), Expect = 4e-15
 Identities = 44/51 (86%), Positives = 45/51 (88%)
 Frame = -3

Query: 222 EKHYKTA*RVKQTLQRYKELQDIIAIFGLDELSEEDCLMVARARKRERFFS 70
           EKHY+TA RVKQTLQRYKELQDIIAI GLDELSEED L VARARK ERF S
Sbjct: 377 EKHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLS 427


>tr|Q9SCB5|Q9SCB5_SOLLC ATP synthase subunit beta (Fragment)
           OS=Solanum lycopersicum GN=atpB PE=3 SV=1
          Length = 498

 Score = 83.6 bits (205), Expect = 5e-15
 Identities = 43/51 (84%), Positives = 46/51 (90%)
 Frame = -3

Query: 222 EKHYKTA*RVKQTLQRYKELQDIIAIFGLDELSEEDCLMVARARKRERFFS 70
           E+HY+TA RVKQTLQRYKELQDIIAI GLDELSEED L+VARARK ERF S
Sbjct: 382 EEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLLVARARKIERFLS 432


>tr|Q9SC86|Q9SC86_NOLHU ATP synthase subunit beta (Fragment)
           OS=Nolana humifusa GN=atpB PE=3 SV=1
          Length = 498

 Score = 83.6 bits (205), Expect = 5e-15
 Identities = 43/51 (84%), Positives = 46/51 (90%)
 Frame = -3

Query: 222 EKHYKTA*RVKQTLQRYKELQDIIAIFGLDELSEEDCLMVARARKRERFFS 70
           E+HY+TA RVKQTLQRYKELQDIIAI GLDELSEED L+VARARK ERF S
Sbjct: 382 EEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLLVARARKIERFLS 432


>tr|Q9MU39|Q9MU39_9ROSI ATP synthase subunit beta (Fragment)
           OS=Medusagyne oppositifolia GN=atpB PE=3 SV=1
          Length = 449

 Score = 83.6 bits (205), Expect = 5e-15
 Identities = 43/51 (84%), Positives = 46/51 (90%)
 Frame = -3

Query: 222 EKHYKTA*RVKQTLQRYKELQDIIAIFGLDELSEEDCLMVARARKRERFFS 70
           E+HY+TA RVKQTLQRYKELQDIIAI GLDELSEED L+VARARK ERF S
Sbjct: 333 EEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLLVARARKIERFLS 383


>tr|Q9MTX8|Q9MTX8_9MAGN ATP synthase subunit beta (Fragment)
           OS=Sedum nudum GN=atpB PE=3 SV=1
          Length = 457

 Score = 83.6 bits (205), Expect = 5e-15
 Identities = 43/51 (84%), Positives = 46/51 (90%)
 Frame = -3

Query: 222 EKHYKTA*RVKQTLQRYKELQDIIAIFGLDELSEEDCLMVARARKRERFFS 70
           E+HY+TA RVK+TLQRYKELQDIIAI GLDELSEED L VARARK ERFFS
Sbjct: 352 EEHYETAQRVKETLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFFS 402


>tr|Q9MTX5|Q9MTX5_SOLAR ATP synthase subunit beta (Fragment)
           OS=Solanum americanum subsp. nodiflorum GN=atpB PE=3
           SV=1
          Length = 479

 Score = 83.6 bits (205), Expect = 5e-15
 Identities = 43/51 (84%), Positives = 46/51 (90%)
 Frame = -3

Query: 222 EKHYKTA*RVKQTLQRYKELQDIIAIFGLDELSEEDCLMVARARKRERFFS 70
           E+HY+TA RVKQTLQRYKELQDIIAI GLDELSEED L+VARARK ERF S
Sbjct: 371 EEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLLVARARKIERFLS 421