NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919973
Clone id YMU001_000131_D12
Library
Length 529
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000131_D12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGAATCCACATACGCACAAACCGTTAAACAGTTACAATTACAGCCTTGGGCACTACCTAA
AGTTCGACAAAGGACAAGCTCGCTGCATGTGTAGCTTCTTTAAATTCCAGTCCCATCAAC
TCCAATAGAGGAAACAGTATCTCACTCATCTGTCCCATTACTCCAACCTGCATATGACCG
GACATGGGAACGAAAAAACTTTGGTGATCTGAATGAGGCATGGATCTCTCTTAAACAAAG
ATAGCAATAGAGATCTTAAAAGCTCTTGAGAGCAGAAGATCATGTAGCTAGAAAAAGCAG
ACTCCCTTTCAATGGCCTCCACTGTTGCTGACAGATGCTGATCTCGAGCGTCGATTTCTC
TTTTTTGAACTCTTCCTGTGTCCAAAACCATCCTCGCGATCATTCTTCCGACCATCTGCT
GAATTAGAAGATGACCTGCGGCTTCGATGCTTGTGCCTCCTCTTGTTCTTCTCTTTGGTT
TCGTTATCATCCTCTCTTCTATGCTTCCTTTCATGATGCCTCCTTTCTT
■■Homology search results ■■ -
sp_hit_id O24915
Definition sp|O24915|MTNN_HELPY MTA/SAH nucleosidase OS=Helicobacter pylori
Align length 25
Score (bit) 31.2
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919973|Adiantum capillus-veneris mRNA, clone:
YMU001_000131_D12.
         (529 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O24915|MTNN_HELPY MTA/SAH nucleosidase OS=Helicobacter pylori...    31   3.2  
sp|Q9ZMY2|MTNN_HELPJ MTA/SAH nucleosidase OS=Helicobacter pylori...    31   3.2  
sp|Q9DB54|CL024_MOUSE Uncharacterized protein C12orf24 homolog O...    31   4.1  
sp|Q9WU34|SEPT3_RAT Neuronal-specific septin-3 OS=Rattus norvegi...    30   7.2  
sp|Q9Z1S5|SEPT3_MOUSE Neuronal-specific septin-3 OS=Mus musculus...    30   7.2  
sp|Q9UH03|SEPT3_HUMAN Neuronal-specific septin-3 OS=Homo sapiens...    30   7.2  
sp|A2BGU8|SEPT3_DANRE Neuronal-specific septin-3 OS=Danio rerio ...    30   7.2  
sp|Q08DM7|SEPT3_BOVIN Neuronal-specific septin-3 OS=Bos taurus G...    30   7.2  

>sp|O24915|MTNN_HELPY MTA/SAH nucleosidase OS=Helicobacter pylori
           GN=mtnN PE=3 SV=1
          Length = 231

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 11/25 (44%), Positives = 20/25 (80%)
 Frame = -3

Query: 170 QVGVMGQMSEILFPLLELMGLEFKE 96
           ++G++G M E + P+LEL G++F+E
Sbjct: 4   KIGILGAMREEITPILELFGVDFEE 28


>sp|Q9ZMY2|MTNN_HELPJ MTA/SAH nucleosidase OS=Helicobacter pylori
           J99 GN=mtnN PE=3 SV=1
          Length = 230

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 11/25 (44%), Positives = 20/25 (80%)
 Frame = -3

Query: 170 QVGVMGQMSEILFPLLELMGLEFKE 96
           ++G++G M E + P+LEL G++F+E
Sbjct: 3   KIGILGAMREEITPILELFGVDFEE 27


>sp|Q9DB54|CL024_MOUSE Uncharacterized protein C12orf24 homolog
           OS=Mus musculus PE=2 SV=1
          Length = 251

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 27/102 (26%), Positives = 46/102 (45%)
 Frame = +3

Query: 15  HKPLNSYNYSLGHYLKFDKGQARCMCSFFKFQSHQLQ*RKQYLTHLSHYSNLHMTGHGNE 194
           H P +  + S   + +   GQ R +CS  K  +        YL  L     +H+  HG++
Sbjct: 70  HIPKSMTDASFLKHPELTLGQKRYLCSVAKICN------SSYLRTLMKRQYMHIFHHGSQ 123

Query: 195 KTLVI*MRHGSLLNKDSNRDLKSS*EQKIM*LEKADSLSMAS 320
           KT V+    G + ++ S +        +   LE+ DSLS+A+
Sbjct: 124 KTGVLTHHRGHMSSRYSQKQHSPCTAWRHH-LEREDSLSIAA 164


>sp|Q9WU34|SEPT3_RAT Neuronal-specific septin-3 OS=Rattus norvegicus
           GN=Sept3 PE=1 SV=2
          Length = 358

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 260 KLLRAEDHVARKSRLPFNGLHCC 328
           K L+ E ++ARK R+P   +HCC
Sbjct: 152 KFLKEEVNIARKKRIPDTRVHCC 174


>sp|Q9Z1S5|SEPT3_MOUSE Neuronal-specific septin-3 OS=Mus musculus
           GN=Sept3 PE=1 SV=2
          Length = 350

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 260 KLLRAEDHVARKSRLPFNGLHCC 328
           K L+ E ++ARK R+P   +HCC
Sbjct: 152 KFLKEEVNIARKKRIPDTRVHCC 174


>sp|Q9UH03|SEPT3_HUMAN Neuronal-specific septin-3 OS=Homo sapiens
           GN=SEPT3 PE=1 SV=3
          Length = 358

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 260 KLLRAEDHVARKSRLPFNGLHCC 328
           K L+ E ++ARK R+P   +HCC
Sbjct: 152 KFLKEEVNIARKKRIPDTRVHCC 174


>sp|A2BGU8|SEPT3_DANRE Neuronal-specific septin-3 OS=Danio rerio
           GN=sept3 PE=2 SV=1
          Length = 361

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 260 KLLRAEDHVARKSRLPFNGLHCC 328
           K L+ E ++ARK R+P   +HCC
Sbjct: 164 KFLKEEVNIARKKRIPDTRVHCC 186


>sp|Q08DM7|SEPT3_BOVIN Neuronal-specific septin-3 OS=Bos taurus
           GN=SEPT3 PE=2 SV=3
          Length = 357

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 260 KLLRAEDHVARKSRLPFNGLHCC 328
           K L+ E ++ARK R+P   +HCC
Sbjct: 152 KFLKEEVNIARKKRIPDTRVHCC 174
tr_hit_id Q2SPN4
Definition tr|Q2SPN4|Q2SPN4_HAHCH Maltose regulon positive regulatory protein MalT OS=Hahella chejuensis (strain KCTC 2396)
Align length 46
Score (bit) 33.1
E-value 9.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919973|Adiantum capillus-veneris mRNA, clone:
YMU001_000131_D12.
         (529 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2SPN4|Q2SPN4_HAHCH Maltose regulon positive regulatory prote...    33   9.0  

>tr|Q2SPN4|Q2SPN4_HAHCH Maltose regulon positive regulatory protein
           MalT OS=Hahella chejuensis (strain KCTC 2396) GN=malT
           PE=4 SV=1
          Length = 918

 Score = 33.1 bits (74), Expect = 9.0
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = +2

Query: 368 NSSCVQNHPRDHSSDHLLN*KMTCGFDACASSCSSLWFRYHPLFYA 505
           N+  V    +      LLN  +  G        S LWFRYHPLF A
Sbjct: 290 NALMVMRLAQQQDGQFLLNSLLNLGLFIVPLDSSGLWFRYHPLFAA 335