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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919975
Clone id YMU001_000131_E02
Library
Length 472
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000131_E02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CAAGCTTCATATCTTGAATTTAGTATGAGATTGATCGAGCCTGGAGCATATTGGCCATTT
AACACAACACTGGTGATTACACGCTCTCAAGCTTTAAATTACATTGCATCCATAATTGAA
GTCGCAACCCTGACAAGCTCTGCAGCTACACTCAAACTGACAGAATGGTTAAGTCATGCA
CATGACACTACATCTTTTGGCACTATATCTCATGGCTGCATCAGTGATGCTTCAACACAA
TGAATAGTGACCCTGCACATCTCGAAGATGATGTCAGTCAGATTCTTCATAGCTTCTCTA
GGTGGCTAACAGATCATCGGAAAATGTCAGGACTGTTTCAGTCTGATAGGAGGTACAAGC
ATCCGTCCAAAAGCCAGGTAGTCATGTGCAAATTGATCATCACTTGGTGACAGCATGCTT
TCCAAATCCCACTCAACATTCGCACGTTTCATTATGCGAAATCTGGGGAGAA
■■Homology search results ■■ -
sp_hit_id Q4VZL0
Definition sp|Q4VZL0|YCF1_CUCSA Putative membrane protein ycf1 OS=Cucumis sativus
Align length 34
Score (bit) 32.3
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919975|Adiantum capillus-veneris mRNA, clone:
YMU001_000131_E02.
         (472 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q4VZL0|YCF1_CUCSA Putative membrane protein ycf1 OS=Cucumis s...    32   1.1  
sp|Q7TSQ1|MRLP_MOUSE Mannose receptor-like protein OS=Mus muscul...    32   1.9  
sp|Q6ZQ93|UBP34_MOUSE Ubiquitin carboxyl-terminal hydrolase 34 O...    31   2.4  
sp|Q70CQ2|UBP34_HUMAN Ubiquitin carboxyl-terminal hydrolase 34 O...    31   3.1  
sp|Q8NCF0|MRLP3_HUMAN Mannose receptor-like protein 3 OS=Homo sa...    31   3.2  
sp|A5D8T8|MRLP2_HUMAN Mannose receptor-like protein 2 OS=Homo sa...    31   3.2  
sp|Q6UXF7|MRLP1_HUMAN Mannose receptor-like protein 1 OS=Homo sa...    31   3.2  
sp|Q54P69|PSIM_DICDI Protein psiM OS=Dictyostelium discoideum GN...    30   7.1  
sp|Q6HLS8|ODO1_BACHK 2-oxoglutarate dehydrogenase E1 component O...    29   9.1  
sp|Q63EB1|ODO1_BACCZ 2-oxoglutarate dehydrogenase E1 component O...    29   9.1  
sp|Q73BN8|ODO1_BACC1 2-oxoglutarate dehydrogenase E1 component O...    29   9.1  
sp|Q81TK1|ODO1_BACAN 2-oxoglutarate dehydrogenase E1 component O...    29   9.1  

>sp|Q4VZL0|YCF1_CUCSA Putative membrane protein ycf1 OS=Cucumis
            sativus GN=ycf1-A PE=3 SV=2
          Length = 1879

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -3

Query: 440  NVEWDLESMLSPSDDQFAHDYLAFGRMLVPPIRL 339
            N E+ LE +L PSDD   H+ L  G  ++ P+RL
Sbjct: 1676 NNEFSLEFLLPPSDDITFHELLEKGIFIIEPVRL 1709


>sp|Q7TSQ1|MRLP_MOUSE Mannose receptor-like protein OS=Mus musculus
           GN=Mrcl PE=2 SV=1
          Length = 534

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = -2

Query: 210 RYSAKRCSVMCMT*PFCQFECSCRACQGCDFNYG 109
           RY   RCSV C+   F + ECSC     CD  YG
Sbjct: 346 RYCQVRCSVQCVHGQFRKEECSCI----CDVGYG 375


>sp|Q6ZQ93|UBP34_MOUSE Ubiquitin carboxyl-terminal hydrolase 34 OS=Mus
            musculus GN=Usp34 PE=1 SV=3
          Length = 3582

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
 Frame = +3

Query: 153  QTDRMVKSCT*HYIFWHYISWLHQ*CFNTMNS---DPAHLEDDVSQILHSFSRWLTDHRK 323
            Q+D   +    HY  W  +SW H  C + + S   D  HL+D + Q+          H  
Sbjct: 1653 QSDHRSRHEVSHYSMWLLVSWAH--CCSLVKSSLADSDHLQDWLKQLTLLIPETAVRHES 1710

Query: 324  MSGLFQ 341
             +GL++
Sbjct: 1711 CNGLYK 1716


>sp|Q70CQ2|UBP34_HUMAN Ubiquitin carboxyl-terminal hydrolase 34
            OS=Homo sapiens GN=USP34 PE=1 SV=2
          Length = 3546

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
 Frame = +3

Query: 153  QTDRMVKSCT*HYIFWHYISWLHQ*CFNTMNS---DPAHLEDDVSQILHSFSRWLTDHRK 323
            Q+D   +    HY  W  +SW H  C + + S   D  HL+D + ++          H  
Sbjct: 1616 QSDHRSRHEVSHYSMWLLVSWAH--CCSLVKSSLADSDHLQDWLKKLTLLIPETAVRHES 1673

Query: 324  MSGLFQ 341
             SGL++
Sbjct: 1674 CSGLYK 1679


>sp|Q8NCF0|MRLP3_HUMAN Mannose receptor-like protein 3 OS=Homo
           sapiens GN=MRLP3 PE=2 SV=2
          Length = 446

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -2

Query: 210 RYSAKRCSVMCMT*PFCQFECSCRACQGCDFNYG 109
           RY   RCS+ C+   F + ECSC     CD  YG
Sbjct: 258 RYCQVRCSLQCVHGRFREEECSC----VCDIGYG 287


>sp|A5D8T8|MRLP2_HUMAN Mannose receptor-like protein 2 OS=Homo
           sapiens GN=MRLP2 PE=2 SV=3
          Length = 446

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -2

Query: 210 RYSAKRCSVMCMT*PFCQFECSCRACQGCDFNYG 109
           RY   RCS+ C+   F + ECSC     CD  YG
Sbjct: 258 RYCQVRCSLQCVHGRFREEECSC----VCDIGYG 287


>sp|Q6UXF7|MRLP1_HUMAN Mannose receptor-like protein 1 OS=Homo
           sapiens GN=MRLP1 PE=2 SV=1
          Length = 455

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -2

Query: 210 RYSAKRCSVMCMT*PFCQFECSCRACQGCDFNYG 109
           RY   RCS+ C+   F + ECSC     CD  YG
Sbjct: 258 RYCQVRCSLQCVHGRFREEECSC----VCDIGYG 287


>sp|Q54P69|PSIM_DICDI Protein psiM OS=Dictyostelium discoideum
           GN=psiM PE=3 SV=1
          Length = 733

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 168 PFCQFECSCRACQGCDFNYGCNVI*SLRACNHQCCVK 58
           P C+ + +C    GC   Y CN +  +  CN+  C +
Sbjct: 348 PQCRKQATCDPKLGCQSTYLCNNVCDIGTCNNGTCTQ 384


>sp|Q6HLS8|ODO1_BACHK 2-oxoglutarate dehydrogenase E1 component
           OS=Bacillus thuringiensis subsp. konkukian GN=odhA PE=3
           SV=1
          Length = 955

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 18/50 (36%), Positives = 31/50 (62%)
 Frame = +3

Query: 237 TMNSDPAHLEDDVSQILHSFSRWLTDHRKMSGLFQSDRRYKHPSKSQVVM 386
           T+ ++P+HLE  V+ ++  F+R   ++RK SGL + D      SKS V++
Sbjct: 310 TLANNPSHLEF-VNPVVEGFARAAQENRKKSGLPEQD-----TSKSFVIL 353


>sp|Q63EB1|ODO1_BACCZ 2-oxoglutarate dehydrogenase E1 component
           OS=Bacillus cereus (strain ZK / E33L) GN=odhA PE=3 SV=1
          Length = 955

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 18/50 (36%), Positives = 31/50 (62%)
 Frame = +3

Query: 237 TMNSDPAHLEDDVSQILHSFSRWLTDHRKMSGLFQSDRRYKHPSKSQVVM 386
           T+ ++P+HLE  V+ ++  F+R   ++RK SGL + D      SKS V++
Sbjct: 310 TLANNPSHLEF-VNPVVEGFARAAQENRKKSGLPEQD-----TSKSFVIL 353
tr_hit_id Q7XA82
Definition tr|Q7XA82|Q7XA82_ARATH At1g78930 OS=Arabidopsis thaliana
Align length 36
Score (bit) 41.2
E-value 0.026
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919975|Adiantum capillus-veneris mRNA, clone:
YMU001_000131_E02.
         (472 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7XA82|Q7XA82_ARATH At1g78930 OS=Arabidopsis thaliana PE=2 SV=1     41   0.026
tr|Q0WRV2|Q0WRV2_ARATH Putative uncharacterized protein At1g7893...    41   0.026
tr|O64555|O64555_ARATH YUP8H12R.46 protein OS=Arabidopsis thalia...    41   0.026
tr|A9RX67|A9RX67_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.100
tr|A7Q4C7|A7Q4C7_VITVI Chromosome chr9 scaffold_49, whole genome...    38   0.29 
tr|Q653Q9|Q653Q9_ORYSJ Putative uncharacterized protein OJ1065_E...    36   1.1  
tr|B6PLF5|B6PLF5_BRAFL Putative uncharacterized protein (Fragmen...    35   1.4  
tr|Q7JNV7|Q7JNV7_CAEEL Apex-related genes protein 1, isoform a O...    34   4.2  

>tr|Q7XA82|Q7XA82_ARATH At1g78930 OS=Arabidopsis thaliana PE=2 SV=1
          Length = 525

 Score = 41.2 bits (95), Expect = 0.026
 Identities = 16/36 (44%), Positives = 25/36 (69%)
 Frame = -3

Query: 467 PRFRIMKRANVEWDLESMLSPSDDQFAHDYLAFGRM 360
           PRFR++K  N+E  L+ ML  +D++FA D+L  G +
Sbjct: 483 PRFRVLKGRNIECTLQEMLGKNDEEFAADFLGLGEL 518


>tr|Q0WRV2|Q0WRV2_ARATH Putative uncharacterized protein At1g78930
           OS=Arabidopsis thaliana GN=At1g78930 PE=2 SV=1
          Length = 591

 Score = 41.2 bits (95), Expect = 0.026
 Identities = 16/36 (44%), Positives = 25/36 (69%)
 Frame = -3

Query: 467 PRFRIMKRANVEWDLESMLSPSDDQFAHDYLAFGRM 360
           PRFR++K  N+E  L+ ML  +D++FA D+L  G +
Sbjct: 549 PRFRVLKGRNIECTLQEMLGKNDEEFAADFLGLGEL 584


>tr|O64555|O64555_ARATH YUP8H12R.46 protein OS=Arabidopsis thaliana
           GN=YUP8H12R.46 PE=4 SV=1
          Length = 600

 Score = 41.2 bits (95), Expect = 0.026
 Identities = 16/36 (44%), Positives = 25/36 (69%)
 Frame = -3

Query: 467 PRFRIMKRANVEWDLESMLSPSDDQFAHDYLAFGRM 360
           PRFR++K  N+E  L+ ML  +D++FA D+L  G +
Sbjct: 558 PRFRVLKGRNIECTLQEMLGKNDEEFAADFLGLGEL 593


>tr|A9RX67|A9RX67_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_120546 PE=4 SV=1
          Length = 546

 Score = 39.3 bits (90), Expect = 0.100
 Identities = 18/40 (45%), Positives = 24/40 (60%)
 Frame = -3

Query: 467 PRFRIMKRANVEWDLESMLSPSDDQFAHDYLAFGRMLVPP 348
           PR R++K   V+  L  ML  +DDQFA  +    R+LVPP
Sbjct: 506 PRARVIKLRQVKCSLREMLHLNDDQFASKFFGVSRLLVPP 545


>tr|A7Q4C7|A7Q4C7_VITVI Chromosome chr9 scaffold_49, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00029636001
           PE=4 SV=1
          Length = 601

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 16/39 (41%), Positives = 27/39 (69%)
 Frame = -3

Query: 467 PRFRIMKRANVEWDLESMLSPSDDQFAHDYLAFGRMLVP 351
           PRF ++K  NV+  L+ ML+ +D++FA +++  GR  VP
Sbjct: 548 PRFWVLKVRNVDCSLKDMLAKNDEEFAAEFMDVGRTPVP 586


>tr|Q653Q9|Q653Q9_ORYSJ Putative uncharacterized protein
           OJ1065_E04.23 (Putative uncharacterized protein)
           OS=Oryza sativa subsp. japonica GN=OJ1065_E04.23 PE=4
           SV=1
          Length = 651

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = -3

Query: 467 PRFRIMKRANVEWDLESMLSPSDDQFAHDYLAFGRMLVPPIRLKQS*HFPM 315
           PRF +++   ++  L  ML+ +D+ FA +YL  GR L   I+  ++  F M
Sbjct: 584 PRFCVLQSRKIDCSLTDMLAKNDELFAEEYLGVGRSLETDIQSSEAACFHM 634


>tr|B6PLF5|B6PLF5_BRAFL Putative uncharacterized protein (Fragment)
           OS=Branchiostoma floridae GN=BRAFLDRAFT_252522 PE=4 SV=1
          Length = 170

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 15/65 (23%)
 Frame = -2

Query: 192 CSVMCMT*PFCQFE-----------CSCRACQGCDFNYGCNVI*SLRACNHQCC----VK 58
           CS  C T   C+F            C  R C GC  ++ CNV    R C+ +CC     K
Sbjct: 1   CSDSCCTSVGCKFRVCSDRCCNSVRCKFRICSGCCHSFSCNV----RVCSDRCCNSVSCK 56

Query: 57  WPICS 43
             +CS
Sbjct: 57  SSVCS 61


>tr|Q7JNV7|Q7JNV7_CAEEL Apex-related genes protein 1, isoform a
           OS=Caenorhabditis elegans GN=arg-1 PE=2 SV=1
          Length = 357

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -2

Query: 207 YSAKRCSVMCMT*PFCQFECSCRACQGCDFN-YGCNVI*SLRACNHQ-CCVKWPICS 43
           Y  KRC+  C+  P   +ECS    + C    YG +   +++ C+HQ  C    +CS
Sbjct: 135 YYGKRCNRYCIPSPALHWECSTNGVRQCAVGWYGDDCSSNIKFCSHQNPCANGGVCS 191