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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919976
Clone id YMU001_000131_E03
Library
Length 331
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000131_E03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAAGAGACCATATGCATCGATTATTAAGGGGGAGCCACCCCAAACAACAACAGACCATAG
ATTTGGGCTTTTACAAGGAGCCCATACCCAATACAATAGGACATGCGACATCAAATACAT
CCAAAAAACACTTGGCTAGTAAGGGAGCCACCCTGCATATCAATCAAGAGAAGCAAAAGG
CAAGCTAACCTCGGCTACCACAGAAGCATCTCCATCTGCAAGCACCTCCTTTGAACGAAA
ACCGCCAATAATGTTGCAAAATGGGCGCGGCTCGAGGTCCCCACATCGGCTTGAGTGGAC
CTAAGGTACCCATCAACAAAACAGAGTCTGA
■■Homology search results ■■ -
sp_hit_id O28534
Definition sp|O28534|Y1740_ARCFU UPF0290 protein AF_1740 OS=Archaeoglobus fulgidus
Align length 22
Score (bit) 29.6
E-value 4.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919976|Adiantum capillus-veneris mRNA, clone:
YMU001_000131_E03.
         (331 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O28534|Y1740_ARCFU UPF0290 protein AF_1740 OS=Archaeoglobus f...    30   4.9  
sp|P36100|T2EA_YEAST Transcription initiation factor IIE subunit...    30   5.0  
sp|Q09666|AHNK_HUMAN Neuroblast differentiation-associated prote...    30   5.0  
sp|P95414|NIRG_PSEAE Protein nirG OS=Pseudomonas aeruginosa GN=n...    29   8.4  
sp|P95175|NUOG_MYCTU NADH-quinone oxidoreductase subunit G OS=My...    29   8.4  
sp|P59962|NUOG_MYCBO NADH-quinone oxidoreductase subunit G OS=My...    29   8.4  

>sp|O28534|Y1740_ARCFU UPF0290 protein AF_1740 OS=Archaeoglobus
          fulgidus GN=AF_1740 PE=3 SV=1
          Length = 179

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -2

Query: 90 WVWAPCKSPNLWSVVVWGGSPL 25
          W+  PC +PN ++V+V GG+P+
Sbjct: 10 WLLLPCYTPNNFAVLVGGGTPI 31


>sp|P36100|T2EA_YEAST Transcription initiation factor IIE subunit
           alpha OS=Saccharomyces cerevisiae GN=TFA1 PE=1 SV=1
          Length = 482

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 36  HPKQQQTIDLGFYKEPIPNTIGHATSNTSKKHL-ASKGATLHIN 164
           +PK+  T+       P+PN +G A  N S +   A+  ATLHIN
Sbjct: 220 NPKKGSTMFRPGDSAPLPNLMGTALGNDSSRRAGANSQATLHIN 263


>sp|Q09666|AHNK_HUMAN Neuroblast differentiation-associated protein
            AHNAK OS=Homo sapiens GN=AHNAK PE=1 SV=2
          Length = 5890

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +3

Query: 141  KGATLHINQEKQKAS*PRLPQKHLHLQAPPLNENRQ*CCKM--GAARGPHIGLSGPKVPI 314
            KG  L + +   KA    +P   LHL+ P +  +         G  +GP + + GPKV I
Sbjct: 2563 KGPKLKMPEMNIKAPKISMPDFDLHLKGPKVKGDVDVSLPKVEGDLKGPEVDIKGPKVDI 2622

Query: 315  N 317
            N
Sbjct: 2623 N 2623


>sp|P95414|NIRG_PSEAE Protein nirG OS=Pseudomonas aeruginosa GN=nirG
           PE=4 SV=1
          Length = 147

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -2

Query: 213 GDASVVAEVSLPFASLD*YAGWLPY*PSVFWMYLMSHVLLYWVWAPCKSP 64
           G A  +A +S+P A  +  A  L   P V   Y   H L  W+   C SP
Sbjct: 63  GGAFTLAAMSVPEARFEEIAALLAGWPQVAHNYRREHALNMWLVVACDSP 112


>sp|P95175|NUOG_MYCTU NADH-quinone oxidoreductase subunit G
           OS=Mycobacterium tuberculosis GN=nuoG PE=3 SV=2
          Length = 806

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
 Frame = +3

Query: 135 ASKGATLHINQEKQKAS*PRLPQKHLHLQAPPLNENRQ*CCKMGA-----ARGPHIGLSG 299
           A +G+TL   Q   +          +HL  P +   R+    +G      A GPHI  +G
Sbjct: 638 ALRGSTLQAGQSDHRVLDALADDMGVHLGVPTVEAAREELAALGIWDGKHAAGPHIAATG 697

Query: 300 PKVP 311
           P  P
Sbjct: 698 PTQP 701


>sp|P59962|NUOG_MYCBO NADH-quinone oxidoreductase subunit G
           OS=Mycobacterium bovis GN=nuoG PE=3 SV=1
          Length = 806

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
 Frame = +3

Query: 135 ASKGATLHINQEKQKAS*PRLPQKHLHLQAPPLNENRQ*CCKMGA-----ARGPHIGLSG 299
           A +G+TL   Q   +          +HL  P +   R+    +G      A GPHI  +G
Sbjct: 638 ALRGSTLQAGQSDHRVLDALADDMGVHLGVPTVEAAREELAALGIWDGKHAAGPHIAATG 697

Query: 300 PKVP 311
           P  P
Sbjct: 698 PTQP 701
tr_hit_id A0C0X6
Definition tr|A0C0X6|A0C0X6_PARTE Chromosome undetermined scaffold_140, whole genome shotgun sequence OS=Paramecium tetraurelia
Align length 74
Score (bit) 35.0
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919976|Adiantum capillus-veneris mRNA, clone:
YMU001_000131_E03.
         (331 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A0C0X6|A0C0X6_PARTE Chromosome undetermined scaffold_140, who...    35   1.8  
tr|Q6FVW9|Q6FVW9_CANGA Strain CBS138 chromosome D complete seque...    34   4.2  
tr|Q4WJQ8|Q4WJQ8_ASPFU PH domain protein OS=Aspergillus fumigatu...    33   7.0  
tr|B0XP06|B0XP06_ASPFC PH domain protein OS=Aspergillus fumigatu...    33   7.0  

>tr|A0C0X6|A0C0X6_PARTE Chromosome undetermined scaffold_140, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00033919001 PE=4 SV=1
          Length = 419

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 20/74 (27%), Positives = 36/74 (48%)
 Frame = +3

Query: 18  RLLRGSHPKQQQTIDLGFYKEPIPNTIGHATSNTSKKHLASKGATLHINQEKQKAS*PRL 197
           R++  +     Q I L  Y++ IP  I   TSN ++KH  S+   L   + +   +  + 
Sbjct: 68  RIMIRTKGSSNQAIPLEQYQQSIPTPIPTPTSNIARKHHQSQSQQLPRLESESNQTLRKQ 127

Query: 198 PQKHLHLQAPPLNE 239
           P+ H++ Q   LN+
Sbjct: 128 PEHHMNTQHDMLNQ 141


>tr|Q6FVW9|Q6FVW9_CANGA Strain CBS138 chromosome D complete sequence
           OS=Candida glabrata GN=CAGL0D04928g PE=4 SV=1
          Length = 452

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
 Frame = -2

Query: 135 PSVFWMYLMSHV----LLYWVWAPCKSPNLWSVVVW-GGSPLII 19
           P + +++L + +    ++YW+WAP    N W V+ W GG P+ I
Sbjct: 140 PHMVYLFLFATLVYCPIVYWIWAPGGWANKWGVLDWAGGGPVEI 183


>tr|Q4WJQ8|Q4WJQ8_ASPFU PH domain protein OS=Aspergillus fumigatus
            GN=AFUA_1G05130 PE=4 SV=1
          Length = 1163

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = +3

Query: 54   TIDLGFYKEPIPNTIGHATSNTSKK---HLASKGATLHINQEKQKAS*PRLPQKHLHLQA 224
            T+D G     +P T   +TS+T KK   H     AT     EKQ+ + P  P  H H ++
Sbjct: 848  TVDFGPTLTYLPTTGRPSTSDTLKKFTHHKTGSDAT-----EKQRYAVPTHPINHTHARS 902

Query: 225  PPLNENRQ 248
            P  +E+R+
Sbjct: 903  PSQDEHRR 910


>tr|B0XP06|B0XP06_ASPFC PH domain protein OS=Aspergillus fumigatus
            (strain CEA10 / CBS 144.89 / FGSC A1163) GN=AFUB_005490
            PE=4 SV=1
          Length = 1163

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = +3

Query: 54   TIDLGFYKEPIPNTIGHATSNTSKK---HLASKGATLHINQEKQKAS*PRLPQKHLHLQA 224
            T+D G     +P T   +TS+T KK   H     AT     EKQ+ + P  P  H H ++
Sbjct: 848  TVDFGPTLTYLPTTGRPSTSDTLKKFTHHKTGSDAT-----EKQRYAVPTHPINHTHARS 902

Query: 225  PPLNENRQ 248
            P  +E+R+
Sbjct: 903  PSQDEHRR 910