BP919984
Clone id YMU001_000131_F01
Library
Length 435
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000131_F01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GAATGCAGTTGCAGATGCTCTCTCCAAGCGTCCAAAGATCAATGCACTAACAACAATTTA
TCATGAGGAACTAGAATCTCTCAGCGAGATGTATCCTCAAGATCCAGACTTCACCACAAT
TTGGGCAGATCTTCAAGCTGGTCACTCAAGGCCACCTTATACCATTAGGGATAATACACT
CTATTGTCAACAAGCAATATGCATAGCTCAGCCCTTATGACAGAAGGTGATGGATGAAGC
ACATAATTCTCCTTATGCCGGGCATCGGGGAATTGCTTCCACCACTAGGGCCCTCGAAAG
GTATTTCTTGTGGTCAACACTCCGTGCGGACATTGAAAAACATGTACGTGAGTGTTTAGT
CTGCCAAAAAGTAAAATATGACAGACATAAAGTTGATGGCAAGCTTCAGCCGCTCCCTGT
GCCTAACACGCCATG
■■Homology search results ■■ -
sp_hit_id Q99315
Definition sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae
Align length 165
Score (bit) 55.1
E-value 1.0e-07
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919984|Adiantum capillus-veneris mRNA, clone:
YMU001_000131_F01.
(435 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein OS=Sa... 55 1e-07
sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein OS=Sa... 55 2e-07
sp|Q9UR07|RTF23_SCHPO Retrotransposable element Tf2 155 kDa prot... 47 4e-05
sp|Q9C0R2|RTF22_SCHPO Retrotransposable element Tf2 155 kDa prot... 47 4e-05
sp|Q05654|RTF21_SCHPO Retrotransposable element Tf2 155 kDa prot... 47 4e-05
sp|P10394|POL4_DROME Retrovirus-related Pol polyprotein from tra... 46 6e-05
sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from tra... 39 0.007
sp|Q5RBK0|GIN1_PONAB Gypsy retrotransposon integrase-like protei... 39 0.012
sp|Q4R6I1|GIN1_MACFA Gypsy retrotransposon integrase-like protei... 39 0.012
sp|A4FUB7|GIN1_BOVIN Gypsy retrotransposon integrase-like protei... 39 0.012
sp|Q09575|YRD6_CAEEL Uncharacterized protein K02A2.6 OS=Caenorha... 37 0.027
sp|Q9NXP7|GIN1_HUMAN Gypsy retrotransposon integrase-like protei... 37 0.035
sp|Q66H30|GIN1_RAT Gypsy retrotransposon integrase-like protein ... 37 0.046
sp|Q8K259|GIN1_MOUSE Gypsy retrotransposon integrase-like protei... 36 0.060
sp|P23074|POL_SFV1 Pro-Pol polyprotein OS=Simian foamy virus typ... 35 0.13
sp|P10401|POLY_DROME Retrovirus-related Pol polyprotein from tra... 33 0.39
sp|Q5DTZ0|K1305_MOUSE Integrase catalytic domain-containing prot... 33 0.51
sp|O95625|ZBT11_HUMAN Zinc finger and BTB domain-containing prot... 32 1.1
sp|O93209|POL_FFV Pro-Pol polyprotein OS=Feline foamy virus GN=p... 31 1.9
sp|P27401|POL_SFV3L Pro-Pol polyprotein OS=Simian foamy virus ty... 31 2.5
sp|P14350|POL_FOAMV Pro-Pol polyprotein OS=Human spumaretrovirus... 31 2.5
sp|P19706|MYSB_ACACA Myosin heavy chain IB OS=Acanthamoeba caste... 29 7.3
sp|Q5L299|YHAM_GEOKA 3'-5' exoribonuclease yhaM OS=Geobacillus k... 29 9.6
sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from tra... 29 9.6
sp|P34092|MYOB_DICDI Myosin IB heavy chain OS=Dictyostelium disc... 29 9.6
sp|P02789|TRFE_CHICK Ovotransferrin OS=Gallus gallus PE=1 SV=2 29 9.8

>sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein
OS=Saccharomyces cerevisiae GN=TY3B-G PE=1 SV=3
Length = 1547

Score = 55.1 bits (131), Expect = 1e-07
Identities = 42/165 (25%), Positives = 67/165 (40%), Gaps = 25/165 (15%)
Frame = +2

Query: 2 NAVADALSKRPKINALTTIYHEELESLSEMYPQDPDFTTIWA-------------DLQAG 142
N VADA+S+ T + ES Y DP + + D+ A
Sbjct: 1000 NVVADAISRAVYTITPETSRPIDTESWKSYYKSDPLCSAVLIHMKELTQHNVTPEDMSAF 1059

Query: 143 HS-----------RPPYTIRDNTLYCQQAICIAQPL*QKVMDEAHNSP-YAGHRGIASTT 286
S R Y++ D +Y Q + + VM H+ + GH G+ T
Sbjct: 1060 RSYQKKLELSETFRKNYSLEDEMIYYQDRLVVPIKQQNAVMRLYHDHTLFGGHFGVTVTL 1119

Query: 287 RALERYFLWSTLRADIEKHVRECLVCQKVKYDRHKVDGKLQPLPV 421
+ + W L+ I +++R C+ CQ +K R ++ G LQPLP+
Sbjct: 1120 AKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPI 1164


>sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein
OS=Saccharomyces cerevisiae GN=TY3B-I PE=3 SV=2
Length = 1498

Score = 54.7 bits (130), Expect = 2e-07
Identities = 42/165 (25%), Positives = 67/165 (40%), Gaps = 25/165 (15%)
Frame = +2

Query: 2 NAVADALSKRPKINALTTIYHEELESLSEMYPQDPDFTTIWA-------------DLQAG 142
N VADA+S+ T + ES Y DP + + D+ A
Sbjct: 1026 NVVADAISRAIYTITPETSRPIDTESWKSYYKSDPLCSAVLIHMKELTQHNVTPEDMSAF 1085

Query: 143 HS-----------RPPYTIRDNTLYCQQAICIAQPL*QKVMDEAHNSP-YAGHRGIASTT 286
S R Y++ D +Y Q + + VM H+ + GH G+ T
Sbjct: 1086 RSYQKKLELSETFRKNYSLEDEMIYYQDRLVVPIKQQNAVMRLYHDHTLFGGHFGVTVTL 1145

Query: 287 RALERYFLWSTLRADIEKHVRECLVCQKVKYDRHKVDGKLQPLPV 421
+ + W L+ I +++R C+ CQ +K R ++ G LQPLP+
Sbjct: 1146 AKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPI 1190


>sp|Q9UR07|RTF23_SCHPO Retrotransposable element Tf2 155 kDa protein
type 3 OS=Schizosaccharomyces pombe GN=Tf2-11 PE=4 SV=1
Length = 1333

Score = 46.6 bits (109), Expect = 4e-05
Identities = 23/69 (33%), Positives = 33/69 (47%)
Frame = +2

Query: 227 VMDEAHNSPYAGHRGIASTTRALERYFLWSTLRADIEKHVRECLVCQKVKYDRHKVDGKL 406
++ + H H GI T + R F W +R I+++V+ C CQ K HK G L
Sbjct: 915 IIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPL 974

Query: 407 QPLPVPNTP 433
QP+P P
Sbjct: 975 QPIPPSERP 983


>sp|Q9C0R2|RTF22_SCHPO Retrotransposable element Tf2 155 kDa protein
type 2 OS=Schizosaccharomyces pombe GN=Tf2-7 PE=2 SV=1
Length = 1333

Score = 46.6 bits (109), Expect = 4e-05
Identities = 23/69 (33%), Positives = 33/69 (47%)
Frame = +2

Query: 227 VMDEAHNSPYAGHRGIASTTRALERYFLWSTLRADIEKHVRECLVCQKVKYDRHKVDGKL 406
++ + H H GI T + R F W +R I+++V+ C CQ K HK G L
Sbjct: 915 IIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPL 974

Query: 407 QPLPVPNTP 433
QP+P P
Sbjct: 975 QPIPPSERP 983


>sp|Q05654|RTF21_SCHPO Retrotransposable element Tf2 155 kDa protein
type 1 OS=Schizosaccharomyces pombe GN=Tf2-1 PE=2 SV=1
Length = 1333

Score = 46.6 bits (109), Expect = 4e-05
Identities = 23/69 (33%), Positives = 33/69 (47%)
Frame = +2

Query: 227 VMDEAHNSPYAGHRGIASTTRALERYFLWSTLRADIEKHVRECLVCQKVKYDRHKVDGKL 406
++ + H H GI T + R F W +R I+++V+ C CQ K HK G L
Sbjct: 915 IIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPL 974

Query: 407 QPLPVPNTP 433
QP+P P
Sbjct: 975 QPIPPSERP 983


>sp|P10394|POL4_DROME Retrovirus-related Pol polyprotein from
transposon 412 OS=Drosophila melanogaster GN=POL PE=4
SV=1
Length = 1237

Score = 46.2 bits (108), Expect = 6e-05
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +2

Query: 221 QKVMDEAHNSPY-AGHRGIASTTRALERYFLWSTLRADIEKHVRECLVCQKVKYDRHKVD 397
+ ++ H+ P GH GI T ++R++ W + I+++VR+C CQK K +H
Sbjct: 894 EAILSTLHDDPIQGGHTGITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAKTTKH--- 950

Query: 398 GKLQPLPVPNTP 433
P+ + TP
Sbjct: 951 -TKTPMTITETP 961


>sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from
transposon opus OS=Drosophila melanogaster GN=pol PE=4
SV=1
Length = 1003

Score = 39.3 bits (90), Expect = 0.007
Identities = 20/70 (28%), Positives = 35/70 (50%)
Frame = +2

Query: 224 KVMDEAHNSPYAGHRGIASTTRALERYFLWSTLRADIEKHVRECLVCQKVKYDRHKVDGK 403
+++++ H + G I + LE+Y+ + + + I C C+ KY+RH
Sbjct: 695 EIIEKEHRRAHRGPTEIR--LQLLEKYY-FPRMSSTIRLQTSSCQCCKLYKYERHPNKPN 751

Query: 404 LQPLPVPNTP 433
LQP P+PN P
Sbjct: 752 LQPTPIPNYP 761


>sp|Q5RBK0|GIN1_PONAB Gypsy retrotransposon integrase-like protein 1
OS=Pongo abelii GN=GIN1 PE=2 SV=1
Length = 522

Score = 38.5 bits (88), Expect = 0.012
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +2

Query: 221 QKVMDEAHNSPYAGHRGIASTTRALERYFLWSTLRADIEKHVRECLVCQKVK 376
+KV+ E H + H GI+ T +E + W+++ D+++ V C CQ K
Sbjct: 71 KKVLRECHENDSGAHHGISRTLTLVESNYYWTSVTNDVKQWVYACQHCQVAK 122


>sp|Q4R6I1|GIN1_MACFA Gypsy retrotransposon integrase-like protein 1
OS=Macaca fascicularis GN=GIN1 PE=2 SV=1
Length = 522

Score = 38.5 bits (88), Expect = 0.012
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +2

Query: 221 QKVMDEAHNSPYAGHRGIASTTRALERYFLWSTLRADIEKHVRECLVCQKVK 376
+KV+ E H + H GI+ T +E + W+++ D+++ V C CQ K
Sbjct: 71 KKVLRECHENDSGAHHGISRTLTLVESNYYWTSVTNDVKQWVYACQHCQVAK 122


>sp|A4FUB7|GIN1_BOVIN Gypsy retrotransposon integrase-like protein 1
OS=Bos taurus GN=GIN1 PE=2 SV=1
Length = 499

Score = 38.5 bits (88), Expect = 0.012
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +2

Query: 221 QKVMDEAHNSPYAGHRGIASTTRALERYFLWSTLRADIEKHVRECLVCQKVK 376
+KV+ E H + H GI+ T +E + W+++ D+++ V C CQ K
Sbjct: 49 KKVLRECHENDTGAHHGISRTLTLVESSYYWTSVTNDVKQWVYACQHCQVAK 100


tr_hit_id B4YF15
Definition tr|B4YF15|B4YF15_ANACO Polyprotein (Fragment) OS=Ananas comosus
Align length 144
Score (bit) 83.6
E-value 5.0e-15
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919984|Adiantum capillus-veneris mRNA, clone:
YMU001_000131_F01.
(435 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B4YF15|B4YF15_ANACO Polyprotein (Fragment) OS=Ananas comosus ... 84 5e-15
tr|Q2QLN6|Q2QLN6_ORYSJ Retrotransposon protein, putative, unclas... 83 8e-15
tr|Q8LM78|Q8LM78_ORYSJ Putative retroelement OS=Oryza sativa sub... 82 1e-14
tr|Q84ZV5|Q84ZV5_SOYBN Polyprotein OS=Glycine max PE=4 SV=1 82 1e-14
tr|Q6UUJ1|Q6UUJ1_ORYSJ Putative gag-pol polyprotein (Putative po... 81 2e-14
tr|Q9SQW9|Q9SQW9_ARATH Putative retroelement pol polyprotein OS=... 80 4e-14
tr|Q93WG4|Q93WG4_ORYSA Putative retroelement OS=Oryza sativa GN=... 80 4e-14
tr|Q7XFI5|Q7XFI5_ORYSJ Retrotransposon protein, putative, Ty3-gy... 80 4e-14
tr|Q10IG2|Q10IG2_ORYSJ Retrotransposon protein, putative, Ty3-gy... 80 4e-14
tr|Q7XW39|Q7XW39_ORYSJ OSJNBb0062H02.17 protein (OSJNBa0054D14.1... 80 5e-14
tr|Q0JJ60|Q0JJ60_ORYSJ Os01g0758700 protein (Fragment) OS=Oryza ... 80 7e-14
tr|Q0J0N1|Q0J0N1_ORYSJ Os09g0491900 protein OS=Oryza sativa subs... 79 1e-13
tr|B5G4Y0|B5G4Y0_TRIMO Putative gag-pol polyprotein OS=Triticum ... 79 1e-13
tr|Q94BM2|Q94BM2_HORVU Gag-pol polyprotein OS=Hordeum vulgare PE... 78 2e-13
tr|Q94BM1|Q94BM1_HORVU Gag-pol polyprotein OS=Hordeum vulgare PE... 78 2e-13
tr|Q0DC29|Q0DC29_ORYSJ Os06g0493000 protein OS=Oryza sativa subs... 78 2e-13
tr|Q9FWC5|Q9FWC5_ORYSJ Putative plant disease resistance polypro... 78 3e-13
tr|Q7XCP6|Q7XCP6_ORYSJ Retrotransposon protein, putative, unclas... 78 3e-13
tr|B7F615|B7F615_ORYSJ cDNA clone:J013129I18, full insert sequen... 78 3e-13
tr|A6R7Z7|A6R7Z7_AJECN Putative uncharacterized protein OS=Ajell... 78 3e-13
tr|A6R121|A6R121_AJECN Putative uncharacterized protein OS=Ajell... 78 3e-13
tr|Q9SLQ0|Q9SLQ0_ORYSI Gag-pol polyprotein (Fragment) OS=Oryza s... 77 4e-13
tr|Q8LMQ2|Q8LMQ2_ORYSJ Putative plant disease resistance polypro... 77 4e-13
tr|Q6UUF6|Q6UUF6_ORYSJ Putative gag-pol polyprotein OS=Oryza sat... 77 4e-13
tr|Q10PF2|Q10PF2_ORYSJ Retrotransposon protein, putative, unclas... 77 6e-13
tr|Q94I07|Q94I07_ORYSA Putative retroelement OS=Oryza sativa GN=... 76 7e-13
tr|Q7XYU1|Q7XYU1_GOSHI Integrase (Fragment) OS=Gossypium hirsutu... 76 7e-13
tr|Q7XG23|Q7XG23_ORYSJ Retrotransposon protein, putative, Ty3-gy... 76 7e-13
tr|Q0JI68|Q0JI68_ORYSJ Os01g0820300 protein OS=Oryza sativa subs... 76 7e-13
tr|Q0DIN4|Q0DIN4_ORYSJ Os05g0374700 protein OS=Oryza sativa subs... 76 7e-13

>tr|B4YF15|B4YF15_ANACO Polyprotein (Fragment) OS=Ananas comosus PE=4
SV=1
Length = 953

Score = 83.6 bits (205), Expect = 5e-15
Identities = 52/144 (36%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
Frame = +2

Query: 2 NAVADALSKRPKINALTTIYHEELESLSEMYPQDPDFTTIWADLQAG-HSRPPYT-IRDN 175
N VADALS+ P + A++ I+ + L+ + + D I Q+ +S P YT ++D
Sbjct: 630 NVVADALSRSPTLLAVSAIHTDLLDQIKWSWNVDDKLKKIIQQKQSDINSWPRYTWVQDQ 689

Query: 176 TLYCQQAICIAQP-L*QKVMDEAHNSPYAGHRGIASTTRALERYFLWSTLRADIEKHVRE 352
+ + + P L +++ H S GH G+ +TTR L+ F W LR D+E+ VRE
Sbjct: 690 LRRKGKLVVGSDPGLKLQLIHNFHASSIGGHSGMEATTRKLKGQFYWKGLRRDVEQFVRE 749

Query: 353 CLVCQKVKYDRHKVDGKLQPLPVP 424
C VCQ+ KY+ G LQPLP+P
Sbjct: 750 CSVCQQNKYETTAPAGLLQPLPIP 773


>tr|Q2QLN6|Q2QLN6_ORYSJ Retrotransposon protein, putative,
unclassified OS=Oryza sativa subsp. japonica
GN=LOC_Os12g43850 PE=4 SV=1
Length = 1619

Score = 82.8 bits (203), Expect = 8e-15
Identities = 50/149 (33%), Positives = 80/149 (53%), Gaps = 8/149 (5%)
Frame = +2

Query: 2 NAVADALSKRPK-----INALTTIYHEELESLSEMYPQDPDFTTIWADLQAGHSR-PPYT 163
N+ ADALS+ P ++AL+ E + + E Y QD D + L +S P +T
Sbjct: 1062 NSAADALSRYPDKETVVLSALSVCIPEWTQEVIEGYAQDSDSLSKVQTLCINNSAIPDFT 1121

Query: 164 IRDNTLYCQQAICIAQ-PL*Q-KVMDEAHNSPYAGHRGIASTTRALERYFLWSTLRADIE 337
+++ LY + + I P+ Q K++ H + GH GI T + +++ F W LR+D+
Sbjct: 1122 LKNGLLYFKDKMWIGNNPIVQRKILANLHTAAIGGHSGITMTYQRIKQLFAWIGLRSDVV 1181

Query: 338 KHVRECLVCQKVKYDRHKVDGKLQPLPVP 424
K ++ C +CQ+ K + K G LQPLPVP
Sbjct: 1182 KFIQHCTICQQAKGEHVKYPGMLQPLPVP 1210


>tr|Q8LM78|Q8LM78_ORYSJ Putative retroelement OS=Oryza sativa subsp.
japonica GN=OSJNAa0082N11.12 PE=4 SV=1
Length = 540

Score = 82.4 bits (202), Expect = 1e-14
Identities = 49/145 (33%), Positives = 67/145 (46%), Gaps = 1/145 (0%)
Frame = +2

Query: 2 NAVADALSKRPKINALTTIYHEELESLSEMYPQDPDFTTIWADLQAGHSRPPYTIRDNTL 181
N +ADALS+R + LES+ E Y DPDF + + + G + + I +
Sbjct: 43 NVIADALSRRYTFLSQLDCRIFGLESIKEQYALDPDFNEVMINCKEGRTWNKFVINGGFV 102

Query: 182 YCQQAICI-AQPL*QKVMDEAHNSPYAGHRGIASTTRALERYFLWSTLRADIEKHVRECL 358
Y +CI + ++ EAH GH G T L +F W +R DIE+ V C
Sbjct: 103 YRANRLCIPVGSVRLLLIQEAHGGGLTGHFGAKKTEDVLAMHFFWPRMRKDIERFVARCT 162

Query: 359 VCQKVKYDRHKVDGKLQPLPVPNTP 433
CQK K R G PLPVP+ P
Sbjct: 163 TCQKAK-SRLNPHGLYMPLPVPSIP 186


>tr|Q84ZV5|Q84ZV5_SOYBN Polyprotein OS=Glycine max PE=4 SV=1
Length = 1552

Score = 82.0 bits (201), Expect = 1e-14
Identities = 45/143 (31%), Positives = 73/143 (51%), Gaps = 2/143 (1%)
Frame = +2

Query: 2 NAVADALSKRPKINALTTIYHEELESLSEMYPQDPDFTTIWADLQAGHSRPPYTIRDNTL 181
N ADALS+ + A + + LE L DP + + G YT+R+ L
Sbjct: 998 NQAADALSRMFML-AWSEPHSIFLEELRARLISDPHLKQLMETYKQGADASHYTVREGLL 1056

Query: 182 YCQQAICIA--QPL*QKVMDEAHNSPYAGHRGIASTTRALERYFLWSTLRADIEKHVREC 355
Y + + I + + K++ E H+SP GH GI T L+ F W ++ D++ ++++C
Sbjct: 1057 YWKDRVVIPAEEEIVNKILQEYHSSPIGGHAGITRTLARLKAQFYWPKMQEDVKAYIQKC 1116

Query: 356 LVCQKVKYDRHKVDGKLQPLPVP 424
L+CQ+ K + G LQPLP+P
Sbjct: 1117 LICQQAKSNNTLPAGLLQPLPIP 1139


>tr|Q6UUJ1|Q6UUJ1_ORYSJ Putative gag-pol polyprotein (Putative
polyprotein) OS=Oryza sativa subsp. japonica
GN=OSJNBa0003M24.1 PE=4 SV=1
Length = 1616

Score = 81.3 bits (199), Expect = 2e-14
Identities = 45/145 (31%), Positives = 70/145 (48%), Gaps = 1/145 (0%)
Frame = +2

Query: 2 NAVADALSKRPKINALTTIYHEELESLSEMYPQDPDFTTIWADLQAGHSRPPYTIRDNTL 181
N +ADALS+R + + LE++ E Y D DF + + + G + + + + +
Sbjct: 1148 NVIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKNVLLNCKEGRTWNKFVLTNGFV 1207

Query: 182 YCQQAICI-AQPL*QKVMDEAHNSPYAGHRGIASTTRALERYFLWSTLRADIEKHVRECL 358
+ +CI A + ++ EAH GH G+ T L +F W +R D+E+ V C
Sbjct: 1208 FRANKLCIPASSVRMLLLQEAHGGGLMGHFGVKKTEDILADHFFWPKMRRDVERFVARCT 1267

Query: 359 VCQKVKYDRHKVDGKLQPLPVPNTP 433
CQK K R G PLPVP+ P
Sbjct: 1268 TCQKAK-SRLNPHGLYMPLPVPSVP 1291


>tr|Q9SQW9|Q9SQW9_ARATH Putative retroelement pol polyprotein
OS=Arabidopsis thaliana GN=F23H6.1 PE=4 SV=1
Length = 1661

Score = 80.5 bits (197), Expect = 4e-14
Identities = 49/151 (32%), Positives = 73/151 (48%), Gaps = 10/151 (6%)
Frame = +2

Query: 2 NAVADALSKRPKINALTTIYHE-----ELESLSEMYPQDPDFTTI---WADLQAGHSRPP 157
N VADALS+RP AL+ + +L +L QD + + I WA Q H
Sbjct: 1116 NKVADALSRRPPTEALSQLTITGPPTIDLTALKAEIQQDHELSQILKNWA--QGDHHDSD 1173

Query: 158 YTIRDNTLYCQQAICI--AQPL*QKVMDEAHNSPYAGHRGIASTTRALERYFLWSTLRAD 331
+T+ D +Y + + I P K++++ H SP GH G T + L W LR D
Sbjct: 1174 FTVADGLIYRKGCLVIPVGSPFIPKMLEKFHTSPIGGHEGALKTFKRLTSEVYWRGLRKD 1233

Query: 332 IEKHVRECLVCQKVKYDRHKVDGKLQPLPVP 424
+ +++ C +CQ+ KY G L PLP+P
Sbjct: 1234 VVNYIKGCQICQENKYSTLSPAGLLSPLPIP 1264


>tr|Q93WG4|Q93WG4_ORYSA Putative retroelement OS=Oryza sativa
GN=OSJNBa0045C13.1 PE=4 SV=1
Length = 1708

Score = 80.5 bits (197), Expect = 4e-14
Identities = 45/145 (31%), Positives = 70/145 (48%), Gaps = 1/145 (0%)
Frame = +2

Query: 2 NAVADALSKRPKINALTTIYHEELESLSEMYPQDPDFTTIWADLQAGHSRPPYTIRDNTL 181
N +ADALS+R + + LE++ E Y D DF + + + G + + + + +
Sbjct: 1148 NVIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFV 1207

Query: 182 YCQQAICI-AQPL*QKVMDEAHNSPYAGHRGIASTTRALERYFLWSTLRADIEKHVRECL 358
+ +CI A + ++ EAH GH G+ T L +F W +R D+E+ V C
Sbjct: 1208 FRANKLCIPASSVRMLLLQEAHGGGLMGHFGVKKTEDILADHFFWPKMRRDVERFVARCT 1267

Query: 359 VCQKVKYDRHKVDGKLQPLPVPNTP 433
CQK K R G PLPVP+ P
Sbjct: 1268 TCQKAKL-RLNPHGLYMPLPVPSVP 1291


>tr|Q7XFI5|Q7XFI5_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
subclass (Putative gag-pol polyprotein) OS=Oryza sativa
subsp. japonica GN=OSJNBb0052C09.15 PE=4 SV=1
Length = 1708

Score = 80.5 bits (197), Expect = 4e-14
Identities = 45/145 (31%), Positives = 70/145 (48%), Gaps = 1/145 (0%)
Frame = +2

Query: 2 NAVADALSKRPKINALTTIYHEELESLSEMYPQDPDFTTIWADLQAGHSRPPYTIRDNTL 181
N +ADALS+R + + LE++ E Y D DF + + + G + + + + +
Sbjct: 1148 NVIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFV 1207

Query: 182 YCQQAICI-AQPL*QKVMDEAHNSPYAGHRGIASTTRALERYFLWSTLRADIEKHVRECL 358
+ +CI A + ++ EAH GH G+ T L +F W +R D+E+ V C
Sbjct: 1208 FRANKLCIPASSVRMLLLQEAHGGGLMGHFGVKKTEDILADHFFWPKMRRDVERFVARCT 1267

Query: 359 VCQKVKYDRHKVDGKLQPLPVPNTP 433
CQK K R G PLPVP+ P
Sbjct: 1268 TCQKAKL-RLNPHGLYMPLPVPSVP 1291


>tr|Q10IG2|Q10IG2_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os03g35326 PE=4 SV=1
Length = 889

Score = 80.5 bits (197), Expect = 4e-14
Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 1/145 (0%)
Frame = +2

Query: 2 NAVADALSKRPKINALTTIYHEELESLSEMYPQDPDFTTIWADLQAGHSRPPYTIRDNTL 181
N +ADALS+R + + LE++ E Y D DF + + G + + + + +
Sbjct: 461 NVIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCMEGRTWNKFVLTNGFV 520

Query: 182 YCQQAICI-AQPL*QKVMDEAHNSPYAGHRGIASTTRALERYFLWSTLRADIEKHVRECL 358
+ +CI A + ++ EAH GH G+ T L +F W +R D+E+ V C
Sbjct: 521 FRANKLCIPASSVRMLLLQEAHGGGLMGHFGVKKTEDILADHFFWPKMRRDVERFVARCT 580

Query: 359 VCQKVKYDRHKVDGKLQPLPVPNTP 433
CQK K R G PLPVP+ P
Sbjct: 581 TCQKAK-SRLNPHGLYMPLPVPSVP 604


>tr|Q7XW39|Q7XW39_ORYSJ OSJNBb0062H02.17 protein (OSJNBa0054D14.1
protein) OS=Oryza sativa subsp. japonica
GN=OSJNBb0062H02.17 PE=4 SV=2
Length = 1629

Score = 80.1 bits (196), Expect = 5e-14
Identities = 47/150 (31%), Positives = 78/150 (52%), Gaps = 8/150 (5%)
Frame = +2

Query: 2 NAVADALSKRP-----KINALTTIYHEELESLSEMYPQDPDFTTIWADLQAGHSRPP-YT 163
N+ ADALS+ P +++AL+ E + + Y DPD + L P ++
Sbjct: 1081 NSAADALSRYPGSDRVELSALSVAVPEWINDIVAGYSSDPDACSKVQTLCINSGAVPNFS 1140

Query: 164 IRDNTLYCQQAICIAQ--PL*QKVMDEAHNSPYAGHRGIASTTRALERYFLWSTLRADIE 337
+R+ LY Q + + + Q+++ H + GH GI T + +++ F W LRA +
Sbjct: 1141 LRNGVLYFQNRLWVGHNVDVQQRILANLHTAAVGGHSGIQVTYQRVKQLFAWPRLRATVV 1200

Query: 338 KHVRECLVCQKVKYDRHKVDGKLQPLPVPN 427
++V+ C VCQ+ K + K G LQPLPVP+
Sbjct: 1201 QYVQACSVCQQAKSEHVKYPGMLQPLPVPD 1230