NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919986
Clone id YMU001_000131_F03
Library
Length 385
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000131_F03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GACTGTTTGAATTTGCTAGATATGGGCATTCTCAATTAAGATGTTTGGTCTGATCTGTGA
GCTTGTACTGTTGTGATTGTTTTTGGCATGCCTCTATAGAGACTTCTACTAAGAGAGAGA
CAGAGACTGACCTGGAAACAGGGTCCCTTGTTATATGTCTTTATTTATTCACTTGCAGAA
CATGTGCAAGCTACAAGTTTTCAGCCAGATAAGTAAGTGTGAAAAAATAGTCTCGATAAA
AAATTATGACTCCACAATTGGAAGTACGCTTGGTGCTTTTTTGGCAGCACTATACATCAA
CCTCATAGTATGACAAAACACATGCTTGCCCATCCTGCTATGGAATATACTCTTAGCACG
AGAACAAAAGAATTTCGCAAGCCTA
■■Homology search results ■■ -
sp_hit_id Q8QGX4
Definition sp|Q8QGX4|PRKDC_CHICK DNA-dependent protein kinase catalytic subunit OS=Gallus gallus
Align length 51
Score (bit) 29.3
E-value 6.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919986|Adiantum capillus-veneris mRNA, clone:
YMU001_000131_F03.
         (385 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8QGX4|PRKDC_CHICK DNA-dependent protein kinase catalytic sub...    29   6.3  
sp|Q54GU4|Y6505_DICDI Uncharacterized protein DDB_G0289975 OS=Di...    29   8.4  

>sp|Q8QGX4|PRKDC_CHICK DNA-dependent protein kinase catalytic
           subunit OS=Gallus gallus GN=PRKDC PE=2 SV=1
          Length = 4134

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
 Frame = -3

Query: 290 VLPKKHQAYFQLWSHNFLSRLFFHT----YLSG-*KLVACTCSASE*IKTY 153
           +LP KH  YFQ W ++F   L  H+     +SG  KL++ T   ++ IK +
Sbjct: 629 ILPDKHVEYFQPWVYSFGYELIIHSTRLPLISGFYKLLSVTMKIAKKIKYF 679


>sp|Q54GU4|Y6505_DICDI Uncharacterized protein DDB_G0289975
           OS=Dictyostelium discoideum GN=DDB_G0289975 PE=4 SV=1
          Length = 1032

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -1

Query: 349 YIP*QDGQACVLSYYEVDV*CCQKSTKRTSNCGVIIFYRDY 227
           YI  + G A +++ Y   +   + STKR S CGV+I  +D+
Sbjct: 707 YIRSRKGVATLINTYLTPI-SAEMSTKRESKCGVVICIKDH 746
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919986|Adiantum capillus-veneris mRNA, clone:
YMU001_000131_F03.
         (385 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******