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NBDC - LSDB Archive
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BP919988
Clone id YMU001_000131_F05
Library
Length 436
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000131_F05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CATTTCGGGGGTGCCCATATTCAAGTTTTGGAAGAGTGTCACCTTCTGCCGTATCTTAAG
AAGACCCGTTCCAATGGGCATGGGTATACCCATGATGATGCATTCACTAACGCCCTCAAT
TTGATCCAGTCGTCCATGAACAGCTGCATCAAAAAGATGATCCGTAGTTTTCTCGAATGA
CGCGAGCATTAAGACGCTGTCCTTCATTTTTGCTATTCCAAAACGTGTAATTCCAAGGAC
TTCTCCCTTGTACGTCATGACATCCGCTAGGAGCATCATGTGCCGAATGTCTATAGTCAT
TCCATGGCTTGCCATGGTGTACTGAATTTCATCAATGATGCATTTCCTGGCAGCCTCAAT
TCCCAGTGTGTGTTCCGCCTCAAACACATGGTTGCTCCTAGTATTCAAGCCATCAATGCC
ATCTGTACCCATAACC
■■Homology search results ■■ -
sp_hit_id Q86AQ5
Definition sp|Q86AQ5|RPC1_DICDI DNA-directed RNA polymerase III subunit rpc1 OS=Dictyostelium discoideum
Align length 131
Score (bit) 172.0
E-value 5.0e-43
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919988|Adiantum capillus-veneris mRNA, clone:
YMU001_000131_F05.
         (436 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q86AQ5|RPC1_DICDI DNA-directed RNA polymerase III subunit rpc...   172   5e-43
sp|O14802|RPC1_HUMAN DNA-directed RNA polymerase III subunit RPC...   168   8e-42
sp|Q5ZL98|RPC1_CHICK DNA-directed RNA polymerase III subunit RPC...   168   8e-42
sp|A4IF62|RPC1_BOVIN DNA-directed RNA polymerase III subunit RPC...   168   8e-42
sp|Q6BI69|RPC1_DEBHA DNA-directed RNA polymerase III subunit RPC...   160   3e-39
sp|P04051|RPC1_YEAST DNA-directed RNA polymerase III subunit RPC...   158   8e-39
sp|O94666|RPC1_SCHPO DNA-directed RNA polymerase III subunit rpc...   156   4e-38
sp|P25202|RPC1_GIALA DNA-directed RNA polymerase III subunit RPC...   124   2e-28
sp|P08968|RPC1_TRYBB DNA-directed RNA polymerase III subunit RPC...   115   8e-26
sp|P27625|RPC1_PLAFA DNA-directed RNA polymerase III subunit RPC...   113   4e-25
sp|Q8U0M5|RPOA2_PYRFU DNA-directed RNA polymerase subunit A'' OS...   110   2e-24
sp|Q9V113|RPOA2_PYRAB DNA-directed RNA polymerase subunit A'' OS...   109   4e-24
sp|Q5JE34|RPOA2_PYRKO DNA-directed RNA polymerase subunit A'' OS...   109   6e-24
sp|O93777|RPOA2_PYRHO DNA-directed RNA polymerase subunit A'' OS...   109   6e-24
sp|P29158|RPOA2_THECE DNA-directed RNA polymerase subunit A'' OS...   107   3e-23
sp|Q58446|RPOA2_METJA DNA-directed RNA polymerase subunit A'' OS...   105   6e-23
sp|P15353|RPOA2_HALMO DNA-directed RNA polymerase subunit A'' OS...   105   6e-23
sp|Q5UZR5|RPOA2_HALMA DNA-directed RNA polymerase subunit A'' OS...   105   6e-23
sp|O27126|RPOA2_METTH DNA-directed RNA polymerase subunit A'' OS...   103   2e-22
sp|P15354|RPOA2_HALSA DNA-directed RNA polymerase subunit A'' OS...   103   4e-22
sp|P09847|RPOA2_METTW DNA-directed RNA polymerase subunit A'' OS...   102   5e-22
sp|Q8PUR2|RPOA2_METMA DNA-directed RNA polymerase subunit A'' OS...   102   7e-22
sp|Q8TRB8|RPOA2_METAC DNA-directed RNA polymerase subunit A'' OS...   102   7e-22
sp|Q979F5|RPOA2_THEVO DNA-directed RNA polymerase subunit A'' OS...   101   2e-21
sp|A6UV49|RPOA2_META3 DNA-directed RNA polymerase subunit A'' OS...   101   2e-21
sp|O28390|RPOA2_ARCFU DNA-directed RNA polymerase subunit A'' OS...   100   3e-21
sp|Q03586|RPOA2_THEAC DNA-directed RNA polymerase subunit A'' OS...   100   5e-21
sp|P58192|RPOA2_SULSO DNA-directed RNA polymerase subunit A'' OS...    99   8e-21
sp|P14247|RPOA2_METVS DNA-directed RNA polymerase subunit A'' OS...    99   8e-21
sp|A4YCR0|RPOA2_METS5 DNA-directed RNA polymerase subunit A'' OS...    97   4e-20

>sp|Q86AQ5|RPC1_DICDI DNA-directed RNA polymerase III subunit rpc1
            OS=Dictyostelium discoideum GN=polr3a PE=3 SV=1
          Length = 1450

 Score =  172 bits (436), Expect = 5e-43
 Identities = 88/131 (67%), Positives = 101/131 (77%)
 Frame = -2

Query: 435  VMGTDGIDGLNTRSNHVFEAEHTLGIEAARKCIIDEIQYTMASHGMTIDIRHMMLLADVM 256
            VM T GI G +T SNH+ E E+TLGIE AR  I+ EI   M SHGM+IDIRH+MLLAD+M
Sbjct: 1305 VMATPGIKGTHTTSNHIMECENTLGIETARNTIMSEIDMIMTSHGMSIDIRHVMLLADLM 1364

Query: 255  TYKGEVLGITRFGIAKMKDSVLMLASFEKTTDHLFDAAVHGRLDQIEGVSECXXXXXXXX 76
            ++KGE+LGITRFGIAKMK+SVLMLASFEKTTDHLFDAAVH R D I GVSEC        
Sbjct: 1365 SFKGEILGITRFGIAKMKESVLMLASFEKTTDHLFDAAVHHRQDDIVGVSECIIMGVVIP 1424

Query: 75   XGTGLLKIRQK 43
             GTGL K+ +K
Sbjct: 1425 LGTGLFKLLRK 1435


>sp|O14802|RPC1_HUMAN DNA-directed RNA polymerase III subunit RPC1
            OS=Homo sapiens GN=POLR3A PE=1 SV=2
          Length = 1390

 Score =  168 bits (426), Expect = 8e-42
 Identities = 86/131 (65%), Positives = 100/131 (76%)
 Frame = -2

Query: 435  VMGTDGIDGLNTRSNHVFEAEHTLGIEAARKCIIDEIQYTMASHGMTIDIRHMMLLADVM 256
            VM T G+ G  T SN+ +E E TLGIEAAR  II+EIQYTM +HGM+ID RH+MLL+D+M
Sbjct: 1235 VMATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLM 1294

Query: 255  TYKGEVLGITRFGIAKMKDSVLMLASFEKTTDHLFDAAVHGRLDQIEGVSECXXXXXXXX 76
            TYKGEVLGITRFG+AKMK+SVLMLASFEKT DHLFDAA  G+ D + GVSEC        
Sbjct: 1295 TYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMN 1354

Query: 75   XGTGLLKIRQK 43
             GTGL K+  K
Sbjct: 1355 IGTGLFKLLHK 1365


>sp|Q5ZL98|RPC1_CHICK DNA-directed RNA polymerase III subunit RPC1
            OS=Gallus gallus GN=POLR3A PE=2 SV=1
          Length = 1390

 Score =  168 bits (426), Expect = 8e-42
 Identities = 86/131 (65%), Positives = 100/131 (76%)
 Frame = -2

Query: 435  VMGTDGIDGLNTRSNHVFEAEHTLGIEAARKCIIDEIQYTMASHGMTIDIRHMMLLADVM 256
            VM T G+ G  T SN+ +E E TLGIEAAR  II+EIQYTM +HGM+ID RH+MLL+D+M
Sbjct: 1235 VMATHGVKGTKTSSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLM 1294

Query: 255  TYKGEVLGITRFGIAKMKDSVLMLASFEKTTDHLFDAAVHGRLDQIEGVSECXXXXXXXX 76
            TYKGEVLGITRFG+AKMK+SVLMLASFEKT DHLFDAA  G+ D + GVSEC        
Sbjct: 1295 TYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMN 1354

Query: 75   XGTGLLKIRQK 43
             GTGL K+  K
Sbjct: 1355 IGTGLFKLLHK 1365


>sp|A4IF62|RPC1_BOVIN DNA-directed RNA polymerase III subunit RPC1
            OS=Bos taurus GN=POLR3A PE=2 SV=1
          Length = 1390

 Score =  168 bits (426), Expect = 8e-42
 Identities = 86/131 (65%), Positives = 100/131 (76%)
 Frame = -2

Query: 435  VMGTDGIDGLNTRSNHVFEAEHTLGIEAARKCIIDEIQYTMASHGMTIDIRHMMLLADVM 256
            VM T G+ G  T SN+ +E E TLGIEAAR  II+EIQYTM +HGM+ID RH+MLL+D+M
Sbjct: 1235 VMATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLM 1294

Query: 255  TYKGEVLGITRFGIAKMKDSVLMLASFEKTTDHLFDAAVHGRLDQIEGVSECXXXXXXXX 76
            TYKGEVLGITRFG+AKMK+SVLMLASFEKT DHLFDAA  G+ D + GVSEC        
Sbjct: 1295 TYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMN 1354

Query: 75   XGTGLLKIRQK 43
             GTGL K+  K
Sbjct: 1355 IGTGLFKLLHK 1365


>sp|Q6BI69|RPC1_DEBHA DNA-directed RNA polymerase III subunit RPC1
            OS=Debaryomyces hansenii GN=RPC1 PE=3 SV=2
          Length = 1457

 Score =  160 bits (404), Expect = 3e-39
 Identities = 80/128 (62%), Positives = 95/128 (74%)
 Frame = -2

Query: 435  VMGTDGIDGLNTRSNHVFEAEHTLGIEAARKCIIDEIQYTMASHGMTIDIRHMMLLADVM 256
            VM TDG+ G  T +NH+ E    LGIEAAR  II EI YTM+ HGM++D RH+ LL DVM
Sbjct: 1302 VMSTDGVVGTKTSTNHILEVFQVLGIEAARASIIGEIDYTMSKHGMSVDPRHIQLLGDVM 1361

Query: 255  TYKGEVLGITRFGIAKMKDSVLMLASFEKTTDHLFDAAVHGRLDQIEGVSECXXXXXXXX 76
            TYKGEVLGITRFG++KM+DSVL LASFEKTTDHLFDA+ + + D+IEGVSEC        
Sbjct: 1362 TYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDASFYMKNDKIEGVSECIILGQTMN 1421

Query: 75   XGTGLLKI 52
             GTG  K+
Sbjct: 1422 IGTGAFKL 1429


>sp|P04051|RPC1_YEAST DNA-directed RNA polymerase III subunit RPC1
            OS=Saccharomyces cerevisiae GN=RPO31 PE=1 SV=1
          Length = 1460

 Score =  158 bits (400), Expect = 8e-39
 Identities = 81/128 (63%), Positives = 95/128 (74%)
 Frame = -2

Query: 435  VMGTDGIDGLNTRSNHVFEAEHTLGIEAARKCIIDEIQYTMASHGMTIDIRHMMLLADVM 256
            VM TDG+ G  T +NHV E    LGIEAAR  II EI YTM++HGM++D RH+ LL DVM
Sbjct: 1303 VMCTDGVIGSRTTTNHVLEVFSVLGIEAARYSIIREINYTMSNHGMSVDPRHIQLLGDVM 1362

Query: 255  TYKGEVLGITRFGIAKMKDSVLMLASFEKTTDHLFDAAVHGRLDQIEGVSECXXXXXXXX 76
            TYKGEVLGITRFG++KM+DSVL LASFEKTTDHLFDAA + + D +EGVSEC        
Sbjct: 1363 TYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMS 1422

Query: 75   XGTGLLKI 52
             GTG  K+
Sbjct: 1423 IGTGSFKV 1430


>sp|O94666|RPC1_SCHPO DNA-directed RNA polymerase III subunit rpc1
            OS=Schizosaccharomyces pombe GN=rpc1 PE=2 SV=1
          Length = 1405

 Score =  156 bits (394), Expect = 4e-38
 Identities = 79/112 (70%), Positives = 88/112 (78%)
 Frame = -2

Query: 435  VMGTDGIDGLNTRSNHVFEAEHTLGIEAARKCIIDEIQYTMASHGMTIDIRHMMLLADVM 256
            VM T+GI G  T +NHV E +  LGIEAAR  II EI YTMA HG+T+D RH+MLL DVM
Sbjct: 1249 VMNTEGIVGTKTSTNHVMEMKDVLGIEAARYSIISEIGYTMAKHGLTVDPRHIMLLGDVM 1308

Query: 255  TYKGEVLGITRFGIAKMKDSVLMLASFEKTTDHLFDAAVHGRLDQIEGVSEC 100
            T KGEVLGITRFG+AKMKDSVL LASFEKTTDHLF+AA     D IEG+SEC
Sbjct: 1309 TCKGEVLGITRFGVAKMKDSVLALASFEKTTDHLFNAAARFAKDSIEGISEC 1360


>sp|P25202|RPC1_GIALA DNA-directed RNA polymerase III subunit RPC1
            OS=Giardia lamblia GN=RPOA3 PE=3 SV=1
          Length = 1741

 Score =  124 bits (310), Expect = 2e-28
 Identities = 65/131 (49%), Positives = 88/131 (67%), Gaps = 1/131 (0%)
 Frame = -2

Query: 435  VMGTDGIDGLNTRSNHVFEAEHTLGIEAARKCIIDEIQYTMASHGMTIDIRHMMLLADVM 256
            ++   GID   T SN++ E  +TLGIEAA   I +EI+  M SHGM +D+RH+ LLAD+M
Sbjct: 1525 ILNVSGIDFTRTLSNNIVEVANTLGIEAAVATISNEIKACMDSHGMAVDMRHIRLLADIM 1584

Query: 255  TYKGEVLGITRFGIAKMK-DSVLMLASFEKTTDHLFDAAVHGRLDQIEGVSECXXXXXXX 79
             ++G VLG TRFG+ KMK DSV+MLASFEKT +HLF+AA+  ++D+  GV+E        
Sbjct: 1585 CFRGRVLGFTRFGLTKMKADSVIMLASFEKTGEHLFNAALGNKVDEANGVTESIILGKPM 1644

Query: 78   XXGTGLLKIRQ 46
              GTG   + Q
Sbjct: 1645 SMGTGSFSLLQ 1655


>sp|P08968|RPC1_TRYBB DNA-directed RNA polymerase III subunit RPC1
            OS=Trypanosoma brucei brucei PE=3 SV=1
          Length = 1530

 Score =  115 bits (288), Expect = 8e-26
 Identities = 58/111 (52%), Positives = 79/111 (71%)
 Frame = -2

Query: 435  VMGTDGIDGLNTRSNHVFEAEHTLGIEAARKCIIDEIQYTMASHGMTIDIRHMMLLADVM 256
            VM   G+D      NHV   E  LGIEAAR+ I+DEIQ  + ++ ++ID+RH+ LLAD+M
Sbjct: 1356 VMNLWGVDSTRVVCNHVAVVERVLGIEAARRVIVDEIQNILKAYSLSIDVRHVYLLADLM 1415

Query: 255  TYKGEVLGITRFGIAKMKDSVLMLASFEKTTDHLFDAAVHGRLDQIEGVSE 103
            T +G VLGITR+GI KM  +VL +ASFE+TTDHL++AA   R+D+   VS+
Sbjct: 1416 TQRGVVLGITRYGIQKMNFNVLTMASFERTTDHLYNAAATQRVDRDLSVSD 1466


>sp|P27625|RPC1_PLAFA DNA-directed RNA polymerase III subunit RPC1
            OS=Plasmodium falciparum PE=3 SV=1
          Length = 2339

 Score =  113 bits (282), Expect = 4e-25
 Identities = 58/128 (45%), Positives = 83/128 (64%)
 Frame = -2

Query: 435  VMGTDGIDGLNTRSNHVFEAEHTLGIEAARKCIIDEIQYTMASHGMTIDIRHMMLLADVM 256
            V+G +G+D  +  SNHV      LGIEAAR  II+EI+  + ++ + IDIRH+MLLAD+M
Sbjct: 2185 VLGLEGVDFKHIISNHVINVFQVLGIEAARITIINEIKKCVEAYSIDIDIRHIMLLADIM 2244

Query: 255  TYKGEVLGITRFGIAKMKDSVLMLASFEKTTDHLFDAAVHGRLDQIEGVSECXXXXXXXX 76
             + G++LGI RFGI K + S LMLASFE+T +HLF ++    +D+I  +SE         
Sbjct: 2245 AFTGDILGINRFGIQKARQSTLMLASFEETNEHLFVSSFFKNVDEINNISESIIVGKNIP 2304

Query: 75   XGTGLLKI 52
             GTG  ++
Sbjct: 2305 IGTGAFQL 2312
tr_hit_id A9RSV5
Definition tr|A9RSV5|A9RSV5_PHYPA DNA-directed RNA polymerase OS=Physcomitrella patens subsp. patens
Align length 141
Score (bit) 209.0
E-value 6.0e-53
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919988|Adiantum capillus-veneris mRNA, clone:
YMU001_000131_F05.
         (436 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RSV5|A9RSV5_PHYPA DNA-directed RNA polymerase OS=Physcomitr...   209   6e-53
tr|A4RTE2|A4RTE2_OSTLU DNA-directed RNA polymerase OS=Ostreococc...   188   1e-46
tr|A7NZA4|A7NZA4_VITVI DNA-directed RNA polymerase OS=Vitis vini...   188   1e-46
tr|Q7X881|Q7X881_ORYSJ DNA-directed RNA polymerase OS=Oryza sati...   187   3e-46
tr|Q01IA5|Q01IA5_ORYSA DNA-directed RNA polymerase OS=Oryza sati...   187   3e-46
tr|B8AVV8|B8AVV8_ORYSI Putative uncharacterized protein OS=Oryza...   187   3e-46
tr|A3AV59|A3AV59_ORYSJ DNA-directed RNA polymerase OS=Oryza sati...   187   3e-46
tr|Q01DV6|Q01DV6_OSTTA DNA-directed RNA polymerase OS=Ostreococc...   180   4e-44
tr|Q5KFV9|Q5KFV9_CRYNE DNA-directed RNA polymerase OS=Cryptococc...   172   1e-41
tr|Q55QA7|Q55QA7_CRYNE DNA-directed RNA polymerase OS=Cryptococc...   172   1e-41
tr|B6NLF5|B6NLF5_BRAFL Putative uncharacterized protein OS=Branc...   171   2e-41
tr|A4IHM8|A4IHM8_XENTR DNA-directed RNA polymerase OS=Xenopus tr...   169   5e-41
tr|B8C4M1|B8C4M1_THAPS DNA directed RNA polymerase III, largest ...   169   5e-41
tr|Q5RK26|Q5RK26_RAT Polr3a protein (Fragment) OS=Rattus norvegi...   168   1e-40
tr|B2RXC6|B2RXC6_MOUSE Polymerase (RNA) III (DNA directed) polyp...   168   1e-40
tr|Q8TCW2|Q8TCW2_HUMAN RNA polymerase III subunit RPC155-D (Frag...   168   1e-40
tr|B7Z6H4|B7Z6H4_HUMAN cDNA FLJ61707, highly similar to DNA-dire...   168   1e-40
tr|Q6CMC7|Q6CMC7_KLULA DNA-directed RNA polymerase OS=Kluyveromy...   168   1e-40
tr|Q4S3H6|Q4S3H6_TETNG DNA-directed RNA polymerase (Fragment) OS...   167   2e-40
tr|Q756K2|Q756K2_ASHGO DNA-directed RNA polymerase OS=Ashbya gos...   166   7e-40
tr|A8Q6K6|A8Q6K6_MALGO DNA-directed RNA polymerase OS=Malassezia...   166   7e-40
tr|A7TNS6|A7TNS6_VANPO DNA-directed RNA polymerase OS=Vanderwalt...   163   3e-39
tr|Q6CB20|Q6CB20_YARLI DNA-directed RNA polymerase OS=Yarrowia l...   162   6e-39
tr|A5DM42|A5DM42_PICGU DNA-directed RNA polymerase OS=Pichia gui...   162   6e-39
tr|A3GEY3|A3GEY3_PICST DNA-directed RNA polymerase OS=Pichia sti...   162   6e-39
tr|B7G2E6|B7G2E6_PHATR Rna polymerase C 157 kDa OS=Phaeodactylum...   162   1e-38
tr|A5E7R0|A5E7R0_LODEL DNA-directed RNA polymerase OS=Lodderomyc...   161   1e-38
tr|Q5A0Z3|Q5A0Z3_CANAL DNA-directed RNA polymerase OS=Candida al...   160   3e-38
tr|Q9LVH0|Q9LVH0_ARATH DNA-directed RNA polymerase OS=Arabidopsi...   160   4e-38
tr|A7SJ34|A7SJ34_NEMVE DNA-directed RNA polymerase OS=Nematostel...   160   4e-38

>tr|A9RSV5|A9RSV5_PHYPA DNA-directed RNA polymerase OS=Physcomitrella
            patens subsp. patens GN=PHYPADRAFT_177840 PE=3 SV=1
          Length = 1397

 Score =  209 bits (532), Expect = 6e-53
 Identities = 108/141 (76%), Positives = 115/141 (81%)
 Frame = -2

Query: 435  VMGTDGIDGLNTRSNHVFEAEHTLGIEAARKCIIDEIQYTMASHGMTIDIRHMMLLADVM 256
            VMG  G++G  T+SNHV EAE TLGIEAAR  IIDEIQYTM SHGMTID RHMMLLADVM
Sbjct: 1251 VMGISGVNGKLTKSNHVIEAEQTLGIEAARNVIIDEIQYTMGSHGMTIDARHMMLLADVM 1310

Query: 255  TYKGEVLGITRFGIAKMKDSVLMLASFEKTTDHLFDAAVHGRLDQIEGVSECXXXXXXXX 76
            TYKGEVLGITRFGIAKMKDSVLMLASFEKTTDHLFDAA+HGR+D+IEGVSEC        
Sbjct: 1311 TYKGEVLGITRFGIAKMKDSVLMLASFEKTTDHLFDAAIHGRVDKIEGVSECIIMGIPMP 1370

Query: 75   XGTGLLKIRQKVTLFQNLNMG 13
             GTGL KIRQKV     L+ G
Sbjct: 1371 IGTGLFKIRQKVEKLPKLSYG 1391


>tr|A4RTE2|A4RTE2_OSTLU DNA-directed RNA polymerase OS=Ostreococcus
            lucimarinus (strain CCE9901) GN=OSTLU_24022 PE=3 SV=1
          Length = 1395

 Score =  188 bits (478), Expect = 1e-46
 Identities = 96/146 (65%), Positives = 114/146 (78%), Gaps = 1/146 (0%)
 Frame = -2

Query: 435  VMGTDGIDGLNTRSNHVFEAEHTLGIEAARKCIIDEIQYTMASHGMTIDIRHMMLLADVM 256
            VMG +GI G  TR+NHV E E TLGIEAAR CII+EI  TM +HGM+ID RH MLLADVM
Sbjct: 1244 VMGIEGIKGTETRTNHVMECERTLGIEAARACIIEEIDSTMGAHGMSIDNRHSMLLADVM 1303

Query: 255  TYKGEVLGITRFGIAKMKDSVLMLASFEKTTDHLFDAAVHGRLDQIEGVSECXXXXXXXX 76
            TYKGEVLGITRFG+AKMKDSVLMLASFEKTTDHLFDAA+HGR D I+GVSEC        
Sbjct: 1304 TYKGEVLGITRFGMAKMKDSVLMLASFEKTTDHLFDAALHGRTDYIDGVSECIIMGIPMP 1363

Query: 75   XGTGLLKIRQK-VTLFQNLNMGTPEM 1
             GTG+ +++ + + L  ++N+G  +M
Sbjct: 1364 IGTGMFRLQHRAMKLEVDINLGVSQM 1389


>tr|A7NZA4|A7NZA4_VITVI DNA-directed RNA polymerase OS=Vitis vinifera
            GN=GSVIVT00024436001 PE=3 SV=1
          Length = 1370

 Score =  188 bits (477), Expect = 1e-46
 Identities = 94/131 (71%), Positives = 109/131 (83%)
 Frame = -2

Query: 435  VMGTDGIDGLNTRSNHVFEAEHTLGIEAARKCIIDEIQYTMASHGMTIDIRHMMLLADVM 256
            VMGT+G+ G  T SNH+ E + TLGIEAARKCII+EIQYTMASHGM+IDIRHMMLLAD+M
Sbjct: 1237 VMGTEGVIGRETTSNHIIEVQQTLGIEAARKCIINEIQYTMASHGMSIDIRHMMLLADLM 1296

Query: 255  TYKGEVLGITRFGIAKMKDSVLMLASFEKTTDHLFDAAVHGRLDQIEGVSECXXXXXXXX 76
            T++GEVLGITRFGI KM  SVLMLASFEKT DHLF+A+V GR D+IEGVSEC        
Sbjct: 1297 TFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVSGRDDKIEGVSECIIMGIPMQ 1356

Query: 75   XGTGLLKIRQK 43
             GTG+LK+RQ+
Sbjct: 1357 LGTGILKVRQR 1367


>tr|Q7X881|Q7X881_ORYSJ DNA-directed RNA polymerase OS=Oryza sativa
            subsp. japonica GN=OSJNBa0076N16.24 PE=2 SV=2
          Length = 1383

 Score =  187 bits (474), Expect = 3e-46
 Identities = 92/132 (69%), Positives = 107/132 (81%)
 Frame = -2

Query: 435  VMGTDGIDGLNTRSNHVFEAEHTLGIEAARKCIIDEIQYTMASHGMTIDIRHMMLLADVM 256
            VMGT G+D + T+SNH+ E   TLGIEAAR+ IIDEIQYTM SHGM ID RHMMLLAD+M
Sbjct: 1237 VMGTPGVDAMKTKSNHIMEVNRTLGIEAARRSIIDEIQYTMKSHGMNIDSRHMMLLADLM 1296

Query: 255  TYKGEVLGITRFGIAKMKDSVLMLASFEKTTDHLFDAAVHGRLDQIEGVSECXXXXXXXX 76
            TYKGE+LGITR+GIAKMK SVLMLASFEKT +HLF+A+  GR DQIEGVSEC        
Sbjct: 1297 TYKGEILGITRYGIAKMKSSVLMLASFEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQ 1356

Query: 75   XGTGLLKIRQKV 40
             GTG+LK+RQ++
Sbjct: 1357 LGTGILKVRQRL 1368


>tr|Q01IA5|Q01IA5_ORYSA DNA-directed RNA polymerase OS=Oryza sativa
            GN=H0425E08.3 PE=3 SV=1
          Length = 1383

 Score =  187 bits (474), Expect = 3e-46
 Identities = 92/132 (69%), Positives = 107/132 (81%)
 Frame = -2

Query: 435  VMGTDGIDGLNTRSNHVFEAEHTLGIEAARKCIIDEIQYTMASHGMTIDIRHMMLLADVM 256
            VMGT G+D + T+SNH+ E   TLGIEAAR+ IIDEIQYTM SHGM ID RHMMLLAD+M
Sbjct: 1237 VMGTPGVDAMKTKSNHIMEVNRTLGIEAARRSIIDEIQYTMKSHGMNIDSRHMMLLADLM 1296

Query: 255  TYKGEVLGITRFGIAKMKDSVLMLASFEKTTDHLFDAAVHGRLDQIEGVSECXXXXXXXX 76
            TYKGE+LGITR+GIAKMK SVLMLASFEKT +HLF+A+  GR DQIEGVSEC        
Sbjct: 1297 TYKGEILGITRYGIAKMKSSVLMLASFEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQ 1356

Query: 75   XGTGLLKIRQKV 40
             GTG+LK+RQ++
Sbjct: 1357 LGTGILKVRQRL 1368


>tr|B8AVV8|B8AVV8_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_16437 PE=4 SV=1
          Length = 1383

 Score =  187 bits (474), Expect = 3e-46
 Identities = 92/132 (69%), Positives = 107/132 (81%)
 Frame = -2

Query: 435  VMGTDGIDGLNTRSNHVFEAEHTLGIEAARKCIIDEIQYTMASHGMTIDIRHMMLLADVM 256
            VMGT G+D + T+SNH+ E   TLGIEAAR+ IIDEIQYTM SHGM ID RHMMLLAD+M
Sbjct: 1237 VMGTPGVDAMKTKSNHIMEVNRTLGIEAARRSIIDEIQYTMKSHGMNIDSRHMMLLADLM 1296

Query: 255  TYKGEVLGITRFGIAKMKDSVLMLASFEKTTDHLFDAAVHGRLDQIEGVSECXXXXXXXX 76
            TYKGE+LGITR+GIAKMK SVLMLASFEKT +HLF+A+  GR DQIEGVSEC        
Sbjct: 1297 TYKGEILGITRYGIAKMKSSVLMLASFEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQ 1356

Query: 75   XGTGLLKIRQKV 40
             GTG+LK+RQ++
Sbjct: 1357 LGTGILKVRQRL 1368


>tr|A3AV59|A3AV59_ORYSJ DNA-directed RNA polymerase OS=Oryza sativa
            subsp. japonica GN=OsJ_014681 PE=3 SV=1
          Length = 1257

 Score =  187 bits (474), Expect = 3e-46
 Identities = 92/132 (69%), Positives = 107/132 (81%)
 Frame = -2

Query: 435  VMGTDGIDGLNTRSNHVFEAEHTLGIEAARKCIIDEIQYTMASHGMTIDIRHMMLLADVM 256
            VMGT G+D + T+SNH+ E   TLGIEAAR+ IIDEIQYTM SHGM ID RHMMLLAD+M
Sbjct: 1111 VMGTPGVDAMKTKSNHIMEVNRTLGIEAARRSIIDEIQYTMKSHGMNIDSRHMMLLADLM 1170

Query: 255  TYKGEVLGITRFGIAKMKDSVLMLASFEKTTDHLFDAAVHGRLDQIEGVSECXXXXXXXX 76
            TYKGE+LGITR+GIAKMK SVLMLASFEKT +HLF+A+  GR DQIEGVSEC        
Sbjct: 1171 TYKGEILGITRYGIAKMKSSVLMLASFEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQ 1230

Query: 75   XGTGLLKIRQKV 40
             GTG+LK+RQ++
Sbjct: 1231 LGTGILKVRQRL 1242


>tr|Q01DV6|Q01DV6_OSTTA DNA-directed RNA polymerase OS=Ostreococcus
            tauri GN=Ot02g06220 PE=3 SV=1
          Length = 1406

 Score =  180 bits (456), Expect = 4e-44
 Identities = 90/131 (68%), Positives = 104/131 (79%)
 Frame = -2

Query: 435  VMGTDGIDGLNTRSNHVFEAEHTLGIEAARKCIIDEIQYTMASHGMTIDIRHMMLLADVM 256
            VMG DG+ G+ T +N+V E E TLGIEAAR CII EI  TM +HGM+ID RH MLLADVM
Sbjct: 1243 VMGIDGVKGIETTTNNVMECERTLGIEAARACIIKEIDDTMRAHGMSIDNRHSMLLADVM 1302

Query: 255  TYKGEVLGITRFGIAKMKDSVLMLASFEKTTDHLFDAAVHGRLDQIEGVSECXXXXXXXX 76
            TYKGEVLGITRFG+AKMKDSVLMLASFEKTTDHLFDAA+HGR D I+GVSEC        
Sbjct: 1303 TYKGEVLGITRFGMAKMKDSVLMLASFEKTTDHLFDAALHGRTDYIDGVSECIIMGIPMP 1362

Query: 75   XGTGLLKIRQK 43
             GTG+ +++ +
Sbjct: 1363 IGTGMFRLQHR 1373


>tr|Q5KFV9|Q5KFV9_CRYNE DNA-directed RNA polymerase OS=Cryptococcus
            neoformans GN=CNF00390 PE=3 SV=1
          Length = 1466

 Score =  172 bits (435), Expect = 1e-41
 Identities = 82/112 (73%), Positives = 97/112 (86%)
 Frame = -2

Query: 435  VMGTDGIDGLNTRSNHVFEAEHTLGIEAARKCIIDEIQYTMASHGMTIDIRHMMLLADVM 256
            VMGT+G+DGL T++NHV E +  LGIEAAR  I +EIQ TM SHGM+ID RH+MLL DVM
Sbjct: 1303 VMGTEGVDGLKTKTNHVMETQQVLGIEAARSTIYNEIQTTMKSHGMSIDPRHVMLLGDVM 1362

Query: 255  TYKGEVLGITRFGIAKMKDSVLMLASFEKTTDHLFDAAVHGRLDQIEGVSEC 100
            TYKGEVLGITRFG+ KMKDSVLMLASFEKTTDHLFDA+++ + D+I+GVSEC
Sbjct: 1363 TYKGEVLGITRFGVQKMKDSVLMLASFEKTTDHLFDASLYSKKDEIQGVSEC 1414


>tr|Q55QA7|Q55QA7_CRYNE DNA-directed RNA polymerase OS=Cryptococcus
            neoformans GN=CNBF4300 PE=3 SV=1
          Length = 1466

 Score =  172 bits (435), Expect = 1e-41
 Identities = 82/112 (73%), Positives = 97/112 (86%)
 Frame = -2

Query: 435  VMGTDGIDGLNTRSNHVFEAEHTLGIEAARKCIIDEIQYTMASHGMTIDIRHMMLLADVM 256
            VMGT+G+DGL T++NHV E +  LGIEAAR  I +EIQ TM SHGM+ID RH+MLL DVM
Sbjct: 1303 VMGTEGVDGLKTKTNHVMETQQVLGIEAARSTIYNEIQTTMKSHGMSIDPRHVMLLGDVM 1362

Query: 255  TYKGEVLGITRFGIAKMKDSVLMLASFEKTTDHLFDAAVHGRLDQIEGVSEC 100
            TYKGEVLGITRFG+ KMKDSVLMLASFEKTTDHLFDA+++ + D+I+GVSEC
Sbjct: 1363 TYKGEVLGITRFGVQKMKDSVLMLASFEKTTDHLFDASLYSKKDEIQGVSEC 1414