BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919992|Adiantum capillus-veneris mRNA, clone:
YMU001_000131_F11.
         (315 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9FEC4|RAA3_CHLRE Trans-splicing factor Raa3, chloroplastic O...    31   1.7  
sp|Q9XI29|Y1540_ARATH Uncharacterized protein At1g15400 OS=Arabi...    30   3.7  
sp|Q01837|P60_LISIV Protein p60 OS=Listeria ivanovii GN=iap PE=3...    30   4.9  
sp|Q54CE0|DDX17_DICDI Probable ATP-dependent RNA helicase ddx17 ...    29   8.3  

>sp|Q9FEC4|RAA3_CHLRE Trans-splicing factor Raa3, chloroplastic
           OS=Chlamydomonas reinhardtii GN=RAA3 PE=1 SV=1
          Length = 1783

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
 Frame = +3

Query: 72  SIYQIRGPLFLKGCTSSSKSRIYTTNSH---ASSANGYTSTPN 191
           S+  + GP+ L G +SSS  R  ++NS+   +S++NG T T N
Sbjct: 332 SLSAVAGPVTLSGSSSSSSGRNSSSNSNTSTSSTSNGVTITSN 374


>sp|Q9XI29|Y1540_ARATH Uncharacterized protein At1g15400
           OS=Arabidopsis thaliana GN=At1g15400 PE=1 SV=2
          Length = 148

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -2

Query: 128 LGRRCTSFQEQGSSDLVYALYLTREPGKKGNTIMKNTSQ 12
           L R   SF+ QGSS +V+   L  E  K GN   K+ SQ
Sbjct: 4   LQRSTISFRRQGSSGIVFDDRLIAELNKSGNNEQKDESQ 42


>sp|Q01837|P60_LISIV Protein p60 OS=Listeria ivanovii GN=iap PE=3
           SV=1
          Length = 524

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/48 (27%), Positives = 29/48 (60%)
 Frame = +3

Query: 63  QIQSIYQIRGPLFLKGCTSSSKSRIYTTNSHASSANGYTSTPNGHEST 206
           Q+  + +++G +      S+S +   TTN++ +++N  TSTP+ + +T
Sbjct: 348 QVGQVLKVKGTVPTANTNSNSNATAPTTNTNNNTSNTSTSTPSKNTNT 395


>sp|Q54CE0|DDX17_DICDI Probable ATP-dependent RNA helicase ddx17
           OS=Dictyostelium discoideum GN=ddx17 PE=3 SV=1
          Length = 785

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 141 TTNSHASSANGYTSTPNGHEST 206
           TTN +  S+NGY S+ NG+ S+
Sbjct: 111 TTNGYNGSSNGYNSSSNGYNSS 132

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919992|Adiantum capillus-veneris mRNA, clone:
YMU001_000131_F11.
         (315 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8AP32|A8AP32_CITK8 Putative uncharacterized protein OS=Citro...    33   7.1  
tr|A5K505|A5K505_PLAVI Putative uncharacterized protein OS=Plasm...    33   7.1  
tr|B6MRW8|B6MRW8_BRAFL Putative uncharacterized protein OS=Branc...    33   9.3  

>tr|A8AP32|A8AP32_CITK8 Putative uncharacterized protein
           OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83
           / SGSC4696) GN=CKO_04184 PE=4 SV=1
          Length = 608

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 26/69 (37%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
 Frame = +1

Query: 73  AYTKSEDPCS*KDVHLRPRVAYIRRIAMPLRRMAT-----PLRRMVTSLQHRDTTIDLGS 237
           A    +DPC    V L  R A    + MPL R+A      PL  +V+    RD   D  S
Sbjct: 26  AVAGQDDPCVTLAVALLSRDAGEGHVCMPLSRLAITEESHPL--LVSWFSERDVPEDWAS 83

Query: 238 CLLTKGHVS 264
           CLL  G VS
Sbjct: 84  CLLASGAVS 92


>tr|A5K505|A5K505_PLAVI Putative uncharacterized protein OS=Plasmodium
            vivax GN=PVX_092340 PE=4 SV=1
          Length = 2172

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +3

Query: 108  GCTSSSKSRIYTTNSHASSANGYTSTPNGH 197
            G T +S S  +++NSHA S+NG+T + + H
Sbjct: 1898 GLTHNSNSHTHSSNSHAHSSNGHTHSSSSH 1927


>tr|B6MRW8|B6MRW8_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_124384 PE=4 SV=1
          Length = 905

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 114 TSSSKSRIYTTNSHASSANGYTSTPNGHESTA*RH 218
           +SS  +  +T+N H  + N +T TPN H  T  RH
Sbjct: 457 SSSKHTHTHTSNRHTHTPNRHTHTPNRHTHTPNRH 491