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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920000
Clone id YMU001_000131_G10
Library
Length 490
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000131_G10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TCAGGAGGATGGCTTCAGGTGAGCGTCCGAGTTTTCTTGCAAGCCGGTCTGCCTTGGAGG
TATGCGTCTGATGGCATTTGTGGGTGGATAGAGATGATGTGATCCTCACAGTGAGTTTTT
CAATTTGTGTACCATTGAATGAAACATGAAATGTGTGGTAAGAGTATGGATTGTTCGAGT
TCTCGAATCTTATGACACACCTATTCAAGATAAGCCTCTCAATCTTTACCGCAGCATTGC
ACTGCCCTTGCATAACAACGGGACACGGGACTAGTCAAAGAAAAGTTCATCAAATTTATT
GTAGCCTTTAATGTATGCAAACATTCCAACACTGACCTTTTTGGTGGTGCTTGAGATTTG
CTCAAAGCTGAATCGCTCTTCTTTTAATAGCAAGATCGTAGTATATGGGTCCGTTATGGG
CCAATATGTGCTTACTGAAGGCATGAGATGTAAGCTTTCTCTTGTAGGTAGATTCTACTG
GATTTTCTGC
■■Homology search results ■■ -
sp_hit_id P0A3A3
Definition sp|P0A3A3|DNAA_PROS9 Chromosomal replication initiator protein dnaA OS=Prochlorococcus sp. (strain PCC 9511)
Align length 59
Score (bit) 32.0
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920000|Adiantum capillus-veneris mRNA, clone:
YMU001_000131_G10.
         (477 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P0A3A3|DNAA_PROS9 Chromosomal replication initiator protein d...    32   1.5  
sp|P0A3A2|DNAA_PROMP Chromosomal replication initiator protein d...    32   1.5  
sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protei...    31   3.2  
sp|Q38W73|DPO3_LACSS DNA polymerase III polC-type OS=Lactobacill...    30   4.3  
sp|A2BVM7|DNAA_PROM5 Chromosomal replication initiator protein d...    30   4.3  
sp|O05393|MCCA_BACSU O-acetylserine dependent cystathionine beta...    29   9.4  

>sp|P0A3A3|DNAA_PROS9 Chromosomal replication initiator protein dnaA
           OS=Prochlorococcus sp. (strain PCC 9511) GN=dnaA PE=3
           SV=1
          Length = 463

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 21/59 (35%), Positives = 26/59 (44%)
 Frame = -1

Query: 450 HLMPSVSTYWPITDPYTTILLLKEERFSFEQISSTTKKVSVGMFAYIKGYNKFDELFFD 274
           HLM +V  Y    DP   +L +  E FS + I S  K    GM A+   Y   D L  D
Sbjct: 172 HLMQAVGHYRVEIDPDAKVLYVSTETFSSDLIQSIRKD---GMHAFKNKYRSVDLLLID 227


>sp|P0A3A2|DNAA_PROMP Chromosomal replication initiator protein dnaA
           OS=Prochlorococcus marinus subsp. pastoris (strain
           CCMP1378 / MED4) GN=dnaA PE=3 SV=1
          Length = 463

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 21/59 (35%), Positives = 26/59 (44%)
 Frame = -1

Query: 450 HLMPSVSTYWPITDPYTTILLLKEERFSFEQISSTTKKVSVGMFAYIKGYNKFDELFFD 274
           HLM +V  Y    DP   +L +  E FS + I S  K    GM A+   Y   D L  D
Sbjct: 172 HLMQAVGHYRVEIDPDAKVLYVSTETFSSDLIQSIRKD---GMHAFKNKYRSVDLLLID 227


>sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein
           At5g15300 OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2
          Length = 548

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
 Frame = +2

Query: 335 TFLVVLEICSKL----NRSSFNSKIVVYGSVMGQYV 430
           TF  VL+ CSKL    N  +F+ K+V +G V+ +YV
Sbjct: 114 TFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYV 149


>sp|Q38W73|DPO3_LACSS DNA polymerase III polC-type OS=Lactobacillus
            sakei subsp. sakei (strain 23K) GN=polC PE=3 SV=1
          Length = 1446

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = -1

Query: 426  YWPITDPYTTILLLKEERFSFEQISSTTKKVSVGMFAYIKGYNKFDELFFD*SRVPLLCK 247
            Y P+   YT +L  +   F    I +   K + G   Y+K Y +  E  F  + V  L K
Sbjct: 979  YQPVAHNYTKVLFGENNVFRAGTIGTVADKTAYG---YVKAYERDTEQTFRGAEVDRLAK 1035

Query: 246  GS 241
            GS
Sbjct: 1036 GS 1037


>sp|A2BVM7|DNAA_PROM5 Chromosomal replication initiator protein dnaA
           OS=Prochlorococcus marinus (strain MIT 9515) GN=dnaA
           PE=3 SV=1
          Length = 463

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = -1

Query: 450 HLMPSVSTYWPITDPYTTILLLKEERFSFEQISSTTKKVSVGMFAYIKGYNKFDELFFD 274
           HLM ++  Y    DP   +L +  E FS + I S  K    GM  +   Y   D L  D
Sbjct: 172 HLMQAIGHYRVEIDPEAKVLYVSTETFSSDLIQSIRKD---GMHVFKNKYRSVDLLLID 227


>sp|O05393|MCCA_BACSU O-acetylserine dependent cystathionine
           beta-synthase OS=Bacillus subtilis GN=mccA PE=1 SV=1
          Length = 307

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 253 MQGQCNAAVKIERLILNR-CVIRFENSNNPYSYH 155
           MQG    A+++E  I N  CV++F+N  NP +Y+
Sbjct: 122 MQGAIQKAIQLETEIENSYCVLQFKNRVNPSTYY 155
tr_hit_id Q41732
Definition tr|Q41732|Q41732_MAIZE Cyclin IIZm (Fragment) OS=Zea mays
Align length 54
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920000|Adiantum capillus-veneris mRNA, clone:
YMU001_000131_G10.
         (477 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q41732|Q41732_MAIZE Cyclin IIZm (Fragment) OS=Zea mays PE=2 SV=1    35   1.9  
tr|B4G016|B4G016_MAIZE Putative uncharacterized protein OS=Zea m...    35   1.9  
tr|B7AK58|B7AK58_9BACE Putative uncharacterized protein OS=Bacte...    34   3.2  
tr|Q43693|Q43693_MAIZE Type A-like cyclin OS=Zea mays GN=CYCZM2W...    34   3.2  
tr|B4FD38|B4FD38_MAIZE Putative uncharacterized protein OS=Zea m...    34   3.2  
tr|Q962J4|Q962J4_PLAVI PV1H14200_P OS=Plasmodium vivax GN=PV1H14...    34   4.2  
tr|A5KB73|A5KB73_PLAVI AP endonuclease (DNA-[apurinic or apyrimi...    34   4.2  
tr|B8LCW6|B8LCW6_THAPS Predicted protein OS=Thalassiosira pseudo...    33   9.2  

>tr|Q41732|Q41732_MAIZE Cyclin IIZm (Fragment) OS=Zea mays PE=2 SV=1
          Length = 456

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
 Frame = -2

Query: 326 ECLHTLKATINLMNFSLTSPVSRC----YARAVQCCGKD*EAYLE*VCHKIREL 177
           E L    + +N + F +T+P ++C    +ARA Q C +D   +LE + + I EL
Sbjct: 298 EVLDMEASVLNYLKFEMTAPTAKCFLRRFARAAQACDEDPALHLEFLANYIAEL 351


>tr|B4G016|B4G016_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 509

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
 Frame = -2

Query: 326 ECLHTLKATINLMNFSLTSPVSRC----YARAVQCCGKD*EAYLE*VCHKIREL 177
           E L    + +N + F +T+P ++C    +ARA Q C +D   +LE + + I EL
Sbjct: 354 EVLDMEASVLNYLKFEMTAPTAKCFLRRFARAAQACDEDPALHLEFLANYIAEL 407


>tr|B7AK58|B7AK58_9BACE Putative uncharacterized protein
           OS=Bacteroides eggerthii DSM 20697 GN=BACEGG_02809 PE=4
           SV=1
          Length = 453

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = -1

Query: 435 VSTYWPITDPYTTILLLKEERFSFEQISS---TTKKVSVGMFAYIKGYNKFDEL 283
           ++T  PIT    T+L L EE+ S E+I +   T    S G+ A++  Y KF  +
Sbjct: 247 MNTITPITSLSDTLLELTEEKISKEEIRNGLETISSTSKGLLAFVDSYRKFTHI 300


>tr|Q43693|Q43693_MAIZE Type A-like cyclin OS=Zea mays GN=CYCZM2W
           PE=2 SV=1
          Length = 502

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
 Frame = -2

Query: 326 ECLHTLKATINLMNFSLTSPVSRC----YARAVQCCGKD*EAYLE*VCHKIREL 177
           E L    + +N + F +T+P ++C    +AR+ Q C +D   +LE + + I EL
Sbjct: 347 EVLEMEASVLNYLKFEMTAPTAKCFLRRFARSAQACDEDPALHLEFLANYIAEL 400


>tr|B4FD38|B4FD38_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 502

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
 Frame = -2

Query: 326 ECLHTLKATINLMNFSLTSPVSRC----YARAVQCCGKD*EAYLE*VCHKIREL 177
           E L    + +N + F +T+P ++C    +AR+ Q C +D   +LE + + I EL
Sbjct: 347 EVLEMEASVLNYLKFEMTAPTAKCFLRRFARSAQACDEDPALHLEFLANYIAEL 400


>tr|Q962J4|Q962J4_PLAVI PV1H14200_P OS=Plasmodium vivax
           GN=PV1H14200c PE=4 SV=1
          Length = 540

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -3

Query: 265 CPVVMQGQCNAAVKIERLILNRCVIRFENSNNPYSYHTFHVSFNGT 128
           CP +M   CN A++I+  I++R  +    S + + Y  FH +F G+
Sbjct: 464 CPFLMGKSCNKAMRIDHFIVSRGFMPNVQSVDIHGYSVFHKNFYGS 509


>tr|A5KB73|A5KB73_PLAVI AP endonuclease (DNA-[apurinic or
           apyrimidinic site] lyase), putative OS=Plasmodium vivax
           GN=PVX_119405 PE=4 SV=1
          Length = 535

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -3

Query: 265 CPVVMQGQCNAAVKIERLILNRCVIRFENSNNPYSYHTFHVSFNGT 128
           CP +M   CN A++I+  I++R  +    S + + Y  FH +F G+
Sbjct: 459 CPFLMGKSCNKAMRIDHFIVSRGFMPNVQSVDIHGYSVFHKNFYGS 504


>tr|B8LCW6|B8LCW6_THAPS Predicted protein OS=Thalassiosira
           pseudonana CCMP1335 GN=THAPSDRAFT_10525 PE=4 SV=1
          Length = 1020

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -1

Query: 96  HLYPPTNAIRRIPPRQTGLQENSD 25
           HLYPP + I+R PPR+  ++E ++
Sbjct: 902 HLYPPVDVIKRTPPRKKAMKEETN 925