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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920012
Clone id YMU001_000132_A06
Library
Length 302
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000132_A06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CATGCAAATAACTAAATTGCATTCACCAGGAGCTACACTTTTGCATTCTCATGACTGTCA
GAATATACAAGGCAATAGGTGAGACATGGAAGACGCATAGTGTGTCAGAATTCAGGATTC
ACCTCATTAACATACAAAAGCAATCATTGAGCAAGGGCACTGGTGTTGTACACTAAGAGG
GCACCACCCAACAAGATAGCGCCGAGGGTAACTGCCTAGATAGCCAATCCAGTAGGACCT
GCAGCATAGCTATCACCAGAAGTTGACCATTCCTCTGGGACATAGATAGGGCTGTATCCA
TC
■■Homology search results ■■ -
sp_hit_id Q40070
Definition sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare
Align length 51
Score (bit) 45.4
E-value 9.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920012|Adiantum capillus-veneris mRNA, clone:
YMU001_000132_A06.
         (302 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloropl...    45   9e-05
sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloropl...    44   2e-04
sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloropl...    44   3e-04
sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloropl...    44   3e-04
sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloropl...    44   3e-04
sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloropl...    43   6e-04
sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloropl...    41   0.002

>sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1
          Length = 138

 Score = 45.4 bits (106), Expect = 9e-05
 Identities = 24/51 (47%), Positives = 25/51 (49%)
 Frame = -1

Query: 302 DGYSPIYVPEEWSTSGDSYAAGPXXXXXXXXXXXXXXXXXXXXVYNTSALA 150
           DGYSPIY PEEWS SGD Y  G                     VY+TSALA
Sbjct: 87  DGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVYSTSALA 137


>sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1
          Length = 140

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 24/52 (46%), Positives = 26/52 (50%)
 Frame = -1

Query: 302 DGYSPIYVPEEWSTSGDSYAAGPXXXXXXXXXXXXXXXXXXXXVYNTSALAQ 147
           DGYSPIY  EEW+ +GD YA G                     VYNTSALAQ
Sbjct: 89  DGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSALAQ 140


>sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1
          Length = 138

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 24/52 (46%), Positives = 25/52 (48%)
 Frame = -1

Query: 302 DGYSPIYVPEEWSTSGDSYAAGPXXXXXXXXXXXXXXXXXXXXVYNTSALAQ 147
           DGYSPIY  +EWS SGD Y  G                     VYNTSALAQ
Sbjct: 87  DGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSALAQ 138


>sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1
          Length = 138

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 24/52 (46%), Positives = 25/52 (48%)
 Frame = -1

Query: 302 DGYSPIYVPEEWSTSGDSYAAGPXXXXXXXXXXXXXXXXXXXXVYNTSALAQ 147
           DGYSPIY  +EWS SGD Y  G                     VYNTSALAQ
Sbjct: 87  DGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALAQ 138


>sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1
          Length = 141

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 24/52 (46%), Positives = 25/52 (48%)
 Frame = -1

Query: 302 DGYSPIYVPEEWSTSGDSYAAGPXXXXXXXXXXXXXXXXXXXXVYNTSALAQ 147
           DGYSPIY  +EWS SGD Y  G                     VYNTSALAQ
Sbjct: 90  DGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 141


>sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1
          Length = 140

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 24/52 (46%), Positives = 24/52 (46%)
 Frame = -1

Query: 302 DGYSPIYVPEEWSTSGDSYAAGPXXXXXXXXXXXXXXXXXXXXVYNTSALAQ 147
           DGYSPIY   EWS SGD Y  G                     VYNTSALAQ
Sbjct: 89  DGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 140


>sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1
          Length = 136

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 22/52 (42%), Positives = 25/52 (48%)
 Frame = -1

Query: 302 DGYSPIYVPEEWSTSGDSYAAGPXXXXXXXXXXXXXXXXXXXXVYNTSALAQ 147
           DGYSPIY  ++WS SGD Y  G                     V+NTSALAQ
Sbjct: 85  DGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALAQ 136
tr_hit_id Q6XW17
Definition tr|Q6XW17|Q6XW17_WHEAT Photosystem II polypeptide (Fragment) OS=Triticum aestivum
Align length 51
Score (bit) 49.3
E-value 9.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920012|Adiantum capillus-veneris mRNA, clone:
YMU001_000132_A06.
         (302 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6XW17|Q6XW17_WHEAT Photosystem II polypeptide (Fragment) OS=...    49   9e-05
tr|A4ZGB4|A4ZGB4_AGATE Chloroplast photosystem II 10 kDa protein...    49   2e-04
tr|Q8H4P7|Q8H4P7_ORYSJ Os07g0147500 protein OS=Oryza sativa subs...    47   5e-04
tr|B8B7A9|B8B7A9_ORYSI Putative uncharacterized protein OS=Oryza...    47   5e-04
tr|A9S7M9|A9S7M9_PHYPA Predicted protein OS=Physcomitrella paten...    47   5e-04
tr|Q6ZBV1|Q6ZBV1_ORYSJ Os08g0200300 protein OS=Oryza sativa subs...    47   6e-04
tr|P93443|P93443_ORYSA Photosystem II 10 kDa polypeptide OS=Oryz...    47   6e-04
tr|A6MZV5|A6MZV5_ORYSI Photosystem ii 10 kDa polypeptide (Fragme...    47   6e-04
tr|A3BQJ5|A3BQJ5_ORYSJ Putative uncharacterized protein OS=Oryza...    47   6e-04
tr|A2YS77|A2YS77_ORYSI Putative uncharacterized protein OS=Oryza...    47   6e-04
tr|A0S601|A0S601_9POAL PS II 10 kDa protein OS=Phyllostachys edu...    47   6e-04
tr|Q6ZF71|Q6ZF71_ORYSJ Putative Photosystem II 10 kDa polypeptid...    46   8e-04
tr|B8B7B0|B8B7B0_ORYSI Putative uncharacterized protein OS=Oryza...    46   8e-04
tr|A3BGK2|A3BGK2_ORYSJ Putative uncharacterized protein OS=Oryza...    46   8e-04
tr|B5X5G7|B5X5G7_SALSA Photosystem II 10 kDa polypeptide, chloro...    46   0.001
tr|A5AWT3|A5AWT3_VITVI Putative uncharacterized protein (Chromos...    46   0.001
tr|Q8GV53|Q8GV53_9LILI Photosystem II 10 kDa protein OS=Xerophyt...    45   0.001
tr|A9RLG5|A9RLG5_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.001
tr|Q1H8R2|Q1H8R2_CHERU Photosystem II 10 kDa polypeptide, chloro...    45   0.002
tr|A1Z271|A1Z271_BRAJU PSII 10Kd peptide OS=Brassica juncea PE=2...    45   0.002
tr|A9S1D9|A9S1D9_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.003
tr|A9S7M8|A9S7M8_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.004
tr|A8VIE2|A8VIE2_PROJU Chloroplast photosystem II PsbR OS=Prosop...    44   0.004
tr|Q84XP6|Q84XP6_BRARP Photosystem II 10kDa polypeptide (Fragmen...    44   0.005
tr|Q6V7X5|Q6V7X5_TRIPR 10 kDa photosystem II polypeptide OS=Trif...    44   0.005
tr|A9PIM0|A9PIM0_POPJC Putative uncharacterized protein OS=Popul...    44   0.005
tr|A1YN01|A1YN01_BRACM Photosystem II 10kDa polytpeptide OS=Bras...    44   0.005
tr|A9PHU8|A9PHU8_POPTR Putative uncharacterized protein OS=Popul...    43   0.007
tr|Q0WWI7|Q0WWI7_ARATH PSII-R protein OS=Arabidopsis thaliana GN...    43   0.009
tr|A1YMZ6|A1YMZ6_BRACM Chloroplast photosystem II 10 kDa polypep...    43   0.009

>tr|Q6XW17|Q6XW17_WHEAT Photosystem II polypeptide (Fragment)
           OS=Triticum aestivum PE=2 SV=1
          Length = 99

 Score = 49.3 bits (116), Expect = 9e-05
 Identities = 26/51 (50%), Positives = 26/51 (50%)
 Frame = -1

Query: 302 DGYSPIYVPEEWSTSGDSYAAGPXXXXXXXXXXXXXXXXXXXXVYNTSALA 150
           DGYSPIY PEEWS SGD YA G                     VYNTSALA
Sbjct: 48  DGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTLAGLLGGGVLLVYNTSALA 98


>tr|A4ZGB4|A4ZGB4_AGATE Chloroplast photosystem II 10 kDa protein
           OS=Agave tequilana PE=2 SV=1
          Length = 144

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 26/52 (50%), Positives = 26/52 (50%)
 Frame = -1

Query: 302 DGYSPIYVPEEWSTSGDSYAAGPXXXXXXXXXXXXXXXXXXXXVYNTSALAQ 147
           DGYSPIY PEEWS SGD Y  G                     VYNTSALAQ
Sbjct: 93  DGYSPIYSPEEWSPSGDVYVGGTTGLLIWAITLAGLLAGGALLVYNTSALAQ 144


>tr|Q8H4P7|Q8H4P7_ORYSJ Os07g0147500 protein OS=Oryza sativa subsp.
           japonica GN=OJ1470_H06.117 PE=2 SV=1
          Length = 137

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 24/51 (47%), Positives = 26/51 (50%)
 Frame = -1

Query: 302 DGYSPIYVPEEWSTSGDSYAAGPXXXXXXXXXXXXXXXXXXXXVYNTSALA 150
           DGYSPIY PEEWS++GD Y  G                     VYNTSALA
Sbjct: 87  DGYSPIYTPEEWSSTGDVYVGGKAGLLLWAITLAGILVGGAILVYNTSALA 137


>tr|B8B7A9|B8B7A9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_24891 PE=4 SV=1
          Length = 137

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 24/51 (47%), Positives = 26/51 (50%)
 Frame = -1

Query: 302 DGYSPIYVPEEWSTSGDSYAAGPXXXXXXXXXXXXXXXXXXXXVYNTSALA 150
           DGYSPIY PEEWS++GD Y  G                     VYNTSALA
Sbjct: 87  DGYSPIYTPEEWSSTGDVYVGGKAGLLLWAITLAGILVGGAILVYNTSALA 137


>tr|A9S7M9|A9S7M9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_163306 PE=4 SV=1
          Length = 147

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 25/51 (49%), Positives = 26/51 (50%)
 Frame = -1

Query: 302 DGYSPIYVPEEWSTSGDSYAAGPXXXXXXXXXXXXXXXXXXXXVYNTSALA 150
           DGYSPIY  EEWS SGDSYA G                     VYNTSAL+
Sbjct: 96  DGYSPIYAKEEWSKSGDSYAGGTPALAIWALLLGGLLVGGALLVYNTSALS 146


>tr|Q6ZBV1|Q6ZBV1_ORYSJ Os08g0200300 protein OS=Oryza sativa subsp.
           japonica GN=P0556A11.19 PE=2 SV=1
          Length = 130

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 24/51 (47%), Positives = 26/51 (50%)
 Frame = -1

Query: 302 DGYSPIYVPEEWSTSGDSYAAGPXXXXXXXXXXXXXXXXXXXXVYNTSALA 150
           DGYSPIY PEEWS +GD+Y  G                     VYNTSALA
Sbjct: 79  DGYSPIYSPEEWSPTGDTYVGGTTGLLIWAVTLAGLLGGGALLVYNTSALA 129


>tr|P93443|P93443_ORYSA Photosystem II 10 kDa polypeptide OS=Oryza
           sativa PE=2 SV=1
          Length = 126

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 24/51 (47%), Positives = 26/51 (50%)
 Frame = -1

Query: 302 DGYSPIYVPEEWSTSGDSYAAGPXXXXXXXXXXXXXXXXXXXXVYNTSALA 150
           DGYSPIY PEEWS +GD+Y  G                     VYNTSALA
Sbjct: 75  DGYSPIYSPEEWSPTGDTYVGGTTGLLIWAVTLAGLLGGGALLVYNTSALA 125


>tr|A6MZV5|A6MZV5_ORYSI Photosystem ii 10 kDa polypeptide (Fragment)
           OS=Oryza sativa subsp. indica PE=2 SV=1
          Length = 128

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 24/51 (47%), Positives = 26/51 (50%)
 Frame = -1

Query: 302 DGYSPIYVPEEWSTSGDSYAAGPXXXXXXXXXXXXXXXXXXXXVYNTSALA 150
           DGYSPIY PEEWS +GD+Y  G                     VYNTSALA
Sbjct: 77  DGYSPIYSPEEWSPTGDTYVGGTTGLLIWAVTLAGLLGGGALLVYNTSALA 127


>tr|A3BQJ5|A3BQJ5_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_025317 PE=4 SV=1
          Length = 704

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 24/51 (47%), Positives = 26/51 (50%)
 Frame = -1

Query: 302 DGYSPIYVPEEWSTSGDSYAAGPXXXXXXXXXXXXXXXXXXXXVYNTSALA 150
           DGYSPIY PEEWS +GD+Y  G                     VYNTSALA
Sbjct: 653 DGYSPIYSPEEWSPTGDTYVGGTTGLLIWAVTLAGLLGGGALLVYNTSALA 703


>tr|A2YS77|A2YS77_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_28175 PE=4 SV=1
          Length = 130

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 24/51 (47%), Positives = 26/51 (50%)
 Frame = -1

Query: 302 DGYSPIYVPEEWSTSGDSYAAGPXXXXXXXXXXXXXXXXXXXXVYNTSALA 150
           DGYSPIY PEEWS +GD+Y  G                     VYNTSALA
Sbjct: 79  DGYSPIYSPEEWSPTGDTYVGGTTGLLIWAVTLAGLLGGGALLVYNTSALA 129