BP920013
Clone id YMU001_000132_A07
Library
Length 438
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000132_A07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TGAACACATAATCTCTATTAGAAGTGAAAGATATTAGAGTTATGAATAGCAACTAGTTCA
ATTTAAGAACATGGTTACTCACCAACACAATACAATGAAGATGTAGGAAAATTGGGTTTT
TGCTGGCTTCTTTAGGACCCACTTGCAATGGTGAGTGAATAAGTTTAGAGCAAATGTCTT
ACGACGGATAAAGTTGATAAGCAATAAAGCTTTAGTAATTATGCTAGCAACCCATGGAAG
CTCTGCAATGTCCTCCATCATTAGGTCAATAGAGTGAGCTGCACAGGGAGTCCACACGAT
GTGTGCATATTTAGCTTCAATTAACTCTCCCATCAGCTTGCAATTGCTTGCATTGTCAGT
GACCACTTGAACAACATTCTGTGGTCCAACCTCCTCAATTGCCTCACTTATGTGGCGGAA
AATTAGCTCCCCTACAAC
■■Homology search results ■■ -
sp_hit_id Q62179
Definition sp|Q62179|SEM4B_MOUSE Semaphorin-4B OS=Mus musculus
Align length 52
Score (bit) 32.0
E-value 1.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920013|Adiantum capillus-veneris mRNA, clone:
YMU001_000132_A07.
(438 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q62179|SEM4B_MOUSE Semaphorin-4B OS=Mus musculus GN=Sema4b PE... 32 1.2
sp|Q5R655|PTCD1_PONAB Pentatricopeptide repeat-containing protei... 32 1.2
sp|O75127|PTCD1_HUMAN Pentatricopeptide repeat-containing protei... 32 1.2
sp|P92530|M940_ARATH Uncharacterized mitochondrial protein AtMg0... 31 2.0
sp|Q8C2E4|PTCD1_MOUSE Pentatricopeptide repeat-containing protei... 30 3.4
sp|Q9NPR2|SEM4B_HUMAN Semaphorin-4B OS=Homo sapiens GN=SEMA4B PE... 30 5.7
sp|Q3U515|VWCE_MOUSE von Willebrand factor C and EGF domain-cont... 29 7.5
sp|P44647|PRIA_HAEIN Primosomal protein N' OS=Haemophilus influe... 29 9.8

>sp|Q62179|SEM4B_MOUSE Semaphorin-4B OS=Mus musculus GN=Sema4b PE=1
SV=2
Length = 823

Score = 32.0 bits (71), Expect = 1.2
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -1

Query: 375 VVQVVTDNASNCKLMGELIEAKYAHIVWTPCAAHSIDLMMEDIAELPWVASI 220
VVQV N S G+ + A+ + WT A L D+A PW I
Sbjct: 505 VVQVPVANCSLYPTCGDCLLARDPYCAWTGSACRLASLYQPDLASRPWTQDI 556


>sp|Q5R655|PTCD1_PONAB Pentatricopeptide repeat-containing protein 1
OS=Pongo abelii GN=PTCD1 PE=2 SV=1
Length = 698

Score = 32.0 bits (71), Expect = 1.2
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = -1

Query: 246 AELPWVASIITKALLLINFIRRKTFALNLFTHHCKWVLKKPAK 118
AE PW S + AL L ++ K F LNL T+H +LK AK
Sbjct: 217 AESPWKDSALQSALKLRQQLQAKNFELNLKTYHA--LLKMAAK 257


>sp|O75127|PTCD1_HUMAN Pentatricopeptide repeat-containing protein 1
OS=Homo sapiens GN=PTCD1 PE=1 SV=2
Length = 700

Score = 32.0 bits (71), Expect = 1.2
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = -1

Query: 246 AELPWVASIITKALLLINFIRRKTFALNLFTHHCKWVLKKPAK 118
AE PW S + AL L ++ K F LNL T+H +LK AK
Sbjct: 219 AESPWKDSALQSALKLRQQLQAKNFELNLKTYHA--LLKMAAK 259


>sp|P92530|M940_ARATH Uncharacterized mitochondrial protein
AtMg00940 OS=Arabidopsis thaliana GN=AtMg00940 PE=4 SV=1
Length = 164

Score = 31.2 bits (69), Expect = 2.0
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = -1

Query: 432 GELIFRHISEAIEEVG---PQNVVQVVTDNASNCKLMGELIEAKYAHIVWTPCAAHSIDL 262
G+L +SEAI P VV T S+ + E +EA A I WTP + +
Sbjct: 60 GKLTAEAVSEAINRAAQGLPFEVVYYPTAGWSDFVVKAEDVEASMA-IFWTPGTRVKMAM 118

Query: 261 MMEDIAELPWVASII 217
ED + + W I+
Sbjct: 119 ETEDSSRITWFQGIV 133


>sp|Q8C2E4|PTCD1_MOUSE Pentatricopeptide repeat-containing protein 1
OS=Mus musculus GN=Ptcd1 PE=2 SV=1
Length = 695

Score = 30.4 bits (67), Expect = 3.4
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -1

Query: 246 AELPWVASIITKALLLINFIRRKTFALNLFTHHCKWVLKKPAK 118
AE PW S + AL L ++ + F LNL T+H +LK AK
Sbjct: 217 AESPWKDSALQSALKLRQQLQARNFQLNLKTYHA--LLKVAAK 257


>sp|Q9NPR2|SEM4B_HUMAN Semaphorin-4B OS=Homo sapiens GN=SEMA4B PE=1
SV=3
Length = 832

Score = 29.6 bits (65), Expect = 5.7
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = -1

Query: 375 VVQVVTDNASNCKLMGELIEAKYAHIVWTPCAAHSIDLMMEDIAELPWVASI 220
VVQV N S + G+ + A+ + W+ + + L +A PW+ I
Sbjct: 513 VVQVPMANCSLYRSCGDCLLARDPYCAWSGSSCKHVSLYQPQLATRPWIQDI 564


>sp|Q3U515|VWCE_MOUSE von Willebrand factor C and EGF
domain-containing protein OS=Mus musculus GN=Vwce PE=2
SV=1
Length = 929

Score = 29.3 bits (64), Expect = 7.5
Identities = 21/57 (36%), Positives = 25/57 (43%)
Frame = -3

Query: 388 WTTECCSSGH*QCKQLQADGRVN*S*ICTHRVDSLCSSLY*PNDGGHCRASMGC*HN 218
W CS QC L DG V + R D+ CS P DGG C + GC H+
Sbjct: 391 WNQPGCS----QC--LCQDGEVTCGGV---RCDATCSHPVPPRDGGCCPSCTGCFHS 438


>sp|P44647|PRIA_HAEIN Primosomal protein N' OS=Haemophilus
influenzae GN=priA PE=3 SV=1
Length = 730

Score = 28.9 bits (63), Expect = 9.8
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 13/76 (17%)
Frame = -1

Query: 312 KYAHIVWTPCAAHS-------IDLMMEDIAE------LPWVASIITKALLLINFIRRKTF 172
KY H+V + A +S IDL ++I L + + + K ++ F+ R+ F
Sbjct: 372 KYQHLVLSKRAGNSTALRHFVIDLKNQNIQNGLSKPLLERMKAHLEKGNQVLLFLNRRGF 431

Query: 171 ALNLFTHHCKWVLKKP 124
A L H C W+ + P
Sbjct: 432 APVLLCHECGWIAQCP 447


tr_hit_id A9TC52
Definition tr|A9TC52|A9TC52_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 115
Score (bit) 103.0
E-value 4.0e-21
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920013|Adiantum capillus-veneris mRNA, clone:
YMU001_000132_A07.
(438 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9TC52|A9TC52_PHYPA Predicted protein (Fragment) OS=Physcomit... 103 4e-21
tr|A5BG18|A5BG18_VITVI Putative uncharacterized protein OS=Vitis... 100 6e-20
tr|A7QLC0|A7QLC0_VITVI Chromosome chr11 scaffold_118, whole geno... 98 2e-19
tr|A7Q3C4|A7Q3C4_VITVI Chromosome chr13 scaffold_48, whole genom... 98 2e-19
tr|A5BC22|A5BC22_VITVI Putative uncharacterized protein OS=Vitis... 98 2e-19
tr|A5ALW2|A5ALW2_VITVI Putative uncharacterized protein OS=Vitis... 98 2e-19
tr|A7Q5Q6|A7Q5Q6_VITVI Chromosome chr14 scaffold_54, whole genom... 97 3e-19
tr|A5BG17|A5BG17_VITVI Putative uncharacterized protein OS=Vitis... 97 3e-19
tr|A5BFB8|A5BFB8_VITVI Putative uncharacterized protein OS=Vitis... 97 3e-19
tr|A5B6K0|A5B6K0_VITVI Putative uncharacterized protein OS=Vitis... 97 3e-19
tr|A7PRW5|A7PRW5_VITVI Chromosome chr14 scaffold_27, whole genom... 97 4e-19
tr|A7NYS1|A7NYS1_VITVI Chromosome chr6 scaffold_3, whole genome ... 97 4e-19
tr|A7QJZ0|A7QJZ0_VITVI Chromosome undetermined scaffold_109, who... 97 5e-19
tr|A7QM17|A7QM17_VITVI Chromosome undetermined scaffold_123, who... 96 1e-18
tr|A5BCV8|A5BCV8_VITVI Putative uncharacterized protein OS=Vitis... 96 1e-18
tr|A7QT07|A7QT07_VITVI Chromosome chr14 scaffold_164, whole geno... 95 2e-18
tr|A7QQ09|A7QQ09_VITVI Chromosome undetermined scaffold_139, who... 95 2e-18
tr|A5B625|A5B625_VITVI Putative uncharacterized protein OS=Vitis... 95 2e-18
tr|A5B2A7|A5B2A7_VITVI Putative uncharacterized protein OS=Vitis... 95 2e-18
tr|A5B5G2|A5B5G2_VITVI Putative uncharacterized protein OS=Vitis... 95 2e-18
tr|A5AXS2|A5AXS2_VITVI Putative uncharacterized protein OS=Vitis... 95 2e-18
tr|A5AL34|A5AL34_VITVI Putative uncharacterized protein OS=Vitis... 95 2e-18
tr|Q2R1C3|Q2R1C3_ORYSJ HAT family dimerisation domain containing... 94 3e-18
tr|A7QFR1|A7QFR1_VITVI Chromosome undetermined scaffold_89, whol... 94 4e-18
tr|A7PQB9|A7PQB9_VITVI Chromosome chr18 scaffold_24, whole genom... 93 6e-18
tr|A5BSH6|A5BSH6_VITVI Putative uncharacterized protein OS=Vitis... 93 6e-18
tr|A5BCE4|A5BCE4_VITVI Putative uncharacterized protein OS=Vitis... 93 6e-18
tr|A7QN52|A7QN52_VITVI Chromosome undetermined scaffold_130, who... 93 7e-18
tr|A7QG01|A7QG01_VITVI Chromosome chr9 scaffold_90, whole genome... 93 7e-18
tr|A7PBM6|A7PBM6_VITVI Chromosome chr16 scaffold_10, whole genom... 93 7e-18

>tr|A9TC52|A9TC52_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_47940 PE=4 SV=1
Length = 201

Score = 103 bits (257), Expect = 4e-21
Identities = 48/115 (41%), Positives = 71/115 (61%)
Frame = -1

Query: 432 GELIFRHISEAIEEVGPQNVVQVVTDNASNCKLMGELIEAKYAHIVWTPCAAHSIDLMME 253
G I+ HI AIE VG N+VQV+TDN SNC+ M + + + Y HI W PCAAH +DL++E
Sbjct: 83 GSYIYGHIKNAIEYVGANNIVQVITDNQSNCRSMDKQLISDYPHIQWIPCAAHCLDLIVE 142

Query: 252 DIAELPWVASIITKALLLINFIRRKTFALNLFTHHCKWVLKKPAKTQFSYIFIVL 88
DIA L W+ I KA ++ F R++ L++F + + + +F Y+F+ L
Sbjct: 143 DIAGLSWMKDFIKKAKTIVKFATRRSKVLSIFRSFSNLEILQFSAARFGYMFLFL 197


>tr|A5BG18|A5BG18_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_015896 PE=4 SV=1
Length = 775

Score = 99.8 bits (247), Expect = 6e-20
Identities = 52/116 (44%), Positives = 77/116 (66%), Gaps = 1/116 (0%)
Frame = -1

Query: 432 GELIFRHISEAIEEVGPQNVVQVVTDNASNCKLMGELIEAKYAHIVWTPCAAHSIDLMME 253
GEL+F+++ E +EE+G +NVVQV+TDNASN G + K + + WTPCAAH IDLM+E
Sbjct: 295 GELMFKYLDEVVEEIGEENVVQVITDNASNYVNAGMRLMEKRSRLWWTPCAAHCIDLMLE 354

Query: 252 DIAELPWVASIITKALLLINFIRRKTFALNLFTHHCK-WVLKKPAKTQFSYIFIVL 88
DI +L A+ +++A ++ FI R T+ L+L K L +PA T+F+ F+ L
Sbjct: 355 DIGKLNVHATTLSRARQIVKFIYRHTWVLSLMRTFTKNHELIRPAITRFATAFLTL 410


>tr|A7QLC0|A7QLC0_VITVI Chromosome chr11 scaffold_118, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00001531001
PE=4 SV=1
Length = 454

Score = 98.2 bits (243), Expect = 2e-19
Identities = 51/116 (43%), Positives = 77/116 (66%), Gaps = 1/116 (0%)
Frame = -1

Query: 432 GELIFRHISEAIEEVGPQNVVQVVTDNASNCKLMGELIEAKYAHIVWTPCAAHSIDLMME 253
GEL+F+++ E +EE+G +NVVQV+TDNASN G ++ K + + WTPCAAH IDLM+E
Sbjct: 118 GELMFKYLDEVVEEIGEENVVQVITDNASNYVNAGMMLMEKRSRLWWTPCAAHCIDLMLE 177

Query: 252 DIAELPWVASIITKALLLINFIRRKTFALNLFTHHCK-WVLKKPAKTQFSYIFIVL 88
DI +L A+ +++A ++ FI T+ L+L K L +PA T+F+ F+ L
Sbjct: 178 DIGKLNVHATTLSRARQVVKFIYGHTWVLSLMRTFTKNHELIRPAITRFATAFLTL 233


>tr|A7Q3C4|A7Q3C4_VITVI Chromosome chr13 scaffold_48, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00029236001
PE=4 SV=1
Length = 561

Score = 98.2 bits (243), Expect = 2e-19
Identities = 51/116 (43%), Positives = 77/116 (66%), Gaps = 1/116 (0%)
Frame = -1

Query: 432 GELIFRHISEAIEEVGPQNVVQVVTDNASNCKLMGELIEAKYAHIVWTPCAAHSIDLMME 253
GEL+F+++ E +EE+G +NVVQV+TDNASN G ++ K + + WTPCAAH IDLM+E
Sbjct: 213 GELMFKYLDEVVEEIGEENVVQVITDNASNYVNAGMMLMEKRSRLWWTPCAAHCIDLMLE 272

Query: 252 DIAELPWVASIITKALLLINFIRRKTFALNLFTHHCK-WVLKKPAKTQFSYIFIVL 88
DI +L A+ +++A ++ FI T+ L+L K L +PA T+F+ F+ L
Sbjct: 273 DIGKLNVHATTLSRARQVVKFIYGHTWVLSLMRTFTKNHELIRPAITRFATAFLTL 328


>tr|A5BC22|A5BC22_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_041875 PE=4 SV=1
Length = 674

Score = 97.8 bits (242), Expect = 2e-19
Identities = 52/116 (44%), Positives = 76/116 (65%), Gaps = 1/116 (0%)
Frame = -1

Query: 432 GELIFRHISEAIEEVGPQNVVQVVTDNASNCKLMGELIEAKYAHIVWTPCAAHSIDLMME 253
GEL+F+++ E +EE+G +NVVQV+TDNASN G + K + + WTPCAAH IDLM+E
Sbjct: 260 GELMFKYLDEVVEEIGEENVVQVITDNASNYVNAGMRLMEKRSRLWWTPCAAHCIDLMLE 319

Query: 252 DIAELPWVASIITKALLLINFIRRKTFALNLFTHHCK-WVLKKPAKTQFSYIFIVL 88
DI +L A+ +++A ++ FI T+ L+L K L +PA TQF+ F+ L
Sbjct: 320 DIGKLNVHATTLSRARQVVKFIYGHTWVLSLXRTFTKNHELIRPAITQFATAFLTL 375


>tr|A5ALW2|A5ALW2_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_000807 PE=4 SV=1
Length = 1137

Score = 97.8 bits (242), Expect = 2e-19
Identities = 49/116 (42%), Positives = 75/116 (64%), Gaps = 1/116 (0%)
Frame = -1

Query: 432 GELIFRHISEAIEEVGPQNVVQVVTDNASNCKLMGELIEAKYAHIVWTPCAAHSIDLMME 253
GE +F + + +E+VG +NVVQV+TDN S+ + G L+E K H+ WTPCAAH +DLM+E
Sbjct: 647 GEKMFELLDKWVEQVGEENVVQVITDNHSSYVMTGRLLELKRPHLYWTPCAAHCLDLMLE 706

Query: 252 DIAELPWVASIITKALLLINFIRRKTFALNLFTHHC-KWVLKKPAKTQFSYIFIVL 88
DI +LP + + +A+ L +I ++ LN+ + L +PAKT+F+ FI L
Sbjct: 707 DIGKLPNIKRTLERAISLNGYIYNRSGLLNMMRRFIGQRELLRPAKTRFATAFITL 762


>tr|A7Q5Q6|A7Q5Q6_VITVI Chromosome chr14 scaffold_54, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00031053001
PE=4 SV=1
Length = 415

Score = 97.4 bits (241), Expect = 3e-19
Identities = 48/116 (41%), Positives = 75/116 (64%), Gaps = 1/116 (0%)
Frame = -1

Query: 432 GELIFRHISEAIEEVGPQNVVQVVTDNASNCKLMGELIEAKYAHIVWTPCAAHSIDLMME 253
GE +F + + +E+VG +NV+QV+TDN S+ + G L+E K H+ WTPCAAH +DLM+E
Sbjct: 5 GEKMFELLDKWVEQVGEENVIQVITDNHSSYVMAGRLLELKRPHLYWTPCAAHCLDLMLE 64

Query: 252 DIAELPWVASIITKALLLINFIRRKTFALNLFTHHC-KWVLKKPAKTQFSYIFIVL 88
DI +LP + + +A+ L +I ++ LN+ + L +PAKT+F+ FI L
Sbjct: 65 DIGKLPNIKRTLERAISLNGYIYNRSGLLNMMRRFTGQRELLRPAKTRFATAFITL 120


>tr|A5BG17|A5BG17_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_015895 PE=4 SV=1
Length = 661

Score = 97.4 bits (241), Expect = 3e-19
Identities = 51/118 (43%), Positives = 80/118 (67%), Gaps = 3/118 (2%)
Frame = -1

Query: 432 GELIFRHISEAIEEVGPQNVVQVVTDNASNCKLMGELIEAKYAHIVWTPCAAHSIDLMME 253
GEL+F+++ E +EE+G +NVVQV+TDNASN G + K + + WTPCAAH IDLM+E
Sbjct: 268 GELMFKYLDEVVEEIGEENVVQVITDNASNYVNAGMRLMEKMSRLWWTPCAAHCIDLMLE 327

Query: 252 DIAELPWVASIITKALLLINFIRRKTFALNL---FTHHCKWVLKKPAKTQFSYIFIVL 88
DI +L A+ +++A ++ FI T+ L+L FT + +++ +PA T+F+ F+ L
Sbjct: 328 DIGKLNVHATTLSRARQVVKFIDGHTWVLSLMRTFTKNHEFI--RPAITRFATAFLTL 383


>tr|A5BFB8|A5BFB8_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_020704 PE=4 SV=1
Length = 803

Score = 97.4 bits (241), Expect = 3e-19
Identities = 48/116 (41%), Positives = 75/116 (64%), Gaps = 1/116 (0%)
Frame = -1

Query: 432 GELIFRHISEAIEEVGPQNVVQVVTDNASNCKLMGELIEAKYAHIVWTPCAAHSIDLMME 253
GE +F + + +E+VG +NV+QV+TDN S+ + G L+E K H+ WTPCAAH +DLM+E
Sbjct: 299 GEKMFELLDKWVEQVGEENVIQVITDNHSSYVMAGRLLELKRPHLYWTPCAAHCLDLMLE 358

Query: 252 DIAELPWVASIITKALLLINFIRRKTFALNLFTHHC-KWVLKKPAKTQFSYIFIVL 88
DI +LP + + +A+ L +I ++ LN+ + L +PAKT+F+ FI L
Sbjct: 359 DIGKLPNIKRTLERAISLNGYIYNRSGLLNMMRRFTGQRELLRPAKTRFATAFITL 414


>tr|A5B6K0|A5B6K0_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_031313 PE=4 SV=1
Length = 803

Score = 97.4 bits (241), Expect = 3e-19
Identities = 48/116 (41%), Positives = 75/116 (64%), Gaps = 1/116 (0%)
Frame = -1

Query: 432 GELIFRHISEAIEEVGPQNVVQVVTDNASNCKLMGELIEAKYAHIVWTPCAAHSIDLMME 253
GE +F + + +E+VG +NV+QV+TDN S+ + G L+E K H+ WTPCAAH +DLM+E
Sbjct: 299 GEKMFELLDKWVEQVGEENVIQVITDNHSSYVMAGRLLELKRPHLYWTPCAAHCLDLMLE 358

Query: 252 DIAELPWVASIITKALLLINFIRRKTFALNLFTHHC-KWVLKKPAKTQFSYIFIVL 88
DI +LP + + +A+ L +I ++ LN+ + L +PAKT+F+ FI L
Sbjct: 359 DIGKLPNIKRTLERAISLNGYIYNRSGLLNMMRRFTGQRELLRPAKTRFATAFITL 414