BP920040
Clone id YMU001_000132_D03
Library
Length 505
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000132_D03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CGACAGGAGGACATGACTGACTGCATGGAGTACGCCTCGCCCGCCGCAACCATCTATCAC
GCTCCGAGCTTGGTGATGGAGATACAGATTCCTCAATCTGCGGTGAAGAAAAAACAAATT
CATCTGAACCGCCTCTCCTTCTAGGTCTTCCTACAATTGGAACCACAGGGTTAGGCAGAC
CCTACAACCTAGTGTGCATGCATATTCATCGCAGGTCGTCCATCATGCATCGTGGTCGCC
ATATGTAATGGCTATTGCCCGCACAGGAGCAATAGGAATTATGGGAATGATTACCCGCGA
ACTACATTGTGTGAACATCAAACACATAGAAATAGGAGAGAAGACAGTACATAGTATAGA
GGCACAGAACACCTCTTGCTTCATTCATATGTAATCCGGACACAGAGTTACAACAGTAGA
TGTAATGAATAACATAGAGGTTGGTTGGTTACATCCAAACACAGGTATGCCCCCCTATAT
ACAATCGCTGCTCCAGCGTAGATCG
■■Homology search results ■■ -
sp_hit_id Q1GTB8
Definition sp|Q1GTB8|KYNB_SPHAL Kynurenine formamidase OS=Sphingopyxis alaskensis
Align length 28
Score (bit) 30.8
E-value 3.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920040|Adiantum capillus-veneris mRNA, clone:
YMU001_000132_D03.
(505 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q1GTB8|KYNB_SPHAL Kynurenine formamidase OS=Sphingopyxis alas... 31 3.7

>sp|Q1GTB8|KYNB_SPHAL Kynurenine formamidase OS=Sphingopyxis
alaskensis GN=kynB PE=3 SV=1
Length = 209

Score = 30.8 bits (68), Expect = 3.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3

Query: 251 PLHMATTMHDGRPAMNMHAH*VVGSA*P 168
PLH A + G PA ++H+H V+G P
Sbjct: 10 PLHAAVPVWPGEPAFSLHSHAVIGEGCP 37


tr_hit_id Q3SUG6
Definition tr|Q3SUG6|Q3SUG6_NITWN Phage terminase GpA OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391)
Align length 29
Score (bit) 35.4
E-value 1.6
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920040|Adiantum capillus-veneris mRNA, clone:
YMU001_000132_D03.
(505 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q3SUG6|Q3SUG6_NITWN Phage terminase GpA OS=Nitrobacter winogr... 35 1.6
tr|Q12ES5|Q12ES5_POLSJ Putative uncharacterized protein OS=Polar... 33 7.8

>tr|Q3SUG6|Q3SUG6_NITWN Phage terminase GpA OS=Nitrobacter
winogradskyi (strain Nb-255 / ATCC 25391) GN=Nwi_0810
PE=4 SV=1
Length = 614

Score = 35.4 bits (80), Expect = 1.6
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +2

Query: 17 LTAWSTPRPPQPSITLRAW*WRYRFLNLR 103
+TAWS P P++T+ AW RYRFL+ R
Sbjct: 27 ITAWSRGLAPDPALTVSAWADRYRFLSSR 55


>tr|Q12ES5|Q12ES5_POLSJ Putative uncharacterized protein
OS=Polaromonas sp. (strain JS666 / ATCC BAA-500)
GN=Bpro_1013 PE=4 SV=1
Length = 362

Score = 33.1 bits (74), Expect = 7.8
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +2

Query: 185 QPSVHAYSSQVVHHASWSPYVMAIARTGAIGIMGMITRELHCVNIKHIEIGEKTVHSIEA 364
Q SV +Q H W+ Y A A A I G++TR+ +++ GE++ H+ E+
Sbjct: 278 QVSVPRGLAQAAFHDDWAAYAQAWAALDAGEIAGLLTRQRMGESVRLTLCGERSAHTYES 337