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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920041
Clone id YMU001_000132_D04
Library
Length 403
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000132_D04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTCGTCAAAGTGCTTCAGCAGTCGCAAAGAACCCAATGGTCCATGCTCGCACGAAGCCCA
TCTAAGTGTATTATCATTATGTAAAGGACAGACTATTTGCAAGAGAGGTCAACTTGGCCT
AGATGCCTATGCAAGACAATCCTGCTAATCTTTTGACAAAGGACGAAGGCTCTGCGTAGT
GAGAAGTTCAAAGCTTTAGGCTTACTCCCCTTTGTGGACTGATCACATAGGGTCTTACAC
ATCCATGTCCATGAGTGCCACACTCAGTAATACAGGTTTCTGTATTGCTACAGTAGGAAC
AAAGGTCAGATCATCCTGCTTGGGCCCCATCCTCATTTCCAAAAGAATTGTCCCTAATCT
ACCTATTATACCTTCAGATTGACTAGTTGCTGCACTATACAAG
■■Homology search results ■■ -
sp_hit_id P10978
Definition sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum
Align length 52
Score (bit) 44.3
E-value 0.0002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920041|Adiantum capillus-veneris mRNA, clone:
YMU001_000132_D04.
         (403 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra...    44   2e-04
sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster G...    35   0.15 
sp|Q07845|GRC3_YEAST Protein GRC3 OS=Saccharomyces cerevisiae GN...    32   1.3  
sp|Q7TNN8|LPIN3_MUSSP Lipin-3 OS=Mus spretus GN=Lpin3 PE=2 SV=1        29   8.2  
sp|Q99PI4|LPIN3_MOUSE Lipin-3 OS=Mus musculus GN=Lpin3 PE=1 SV=1       29   8.2  

>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from
            transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
          Length = 1328

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 21/52 (40%), Positives = 34/52 (65%)
 Frame = +3

Query: 6    QSASAVAKNPMVHARTKPI*VYYHYVKDRLFAREVNLA*MPMQDNPANLLTK 161
            QSA  ++KN M HARTK I V YH++++ +    + +  +   +NPA++LTK
Sbjct: 1258 QSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTK 1309


>sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster GN=GIP
            PE=1 SV=3
          Length = 1409

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = +3

Query: 6    QSASAVAKNPMVHARTKPI*VYYHYVKDRLFAREVNLA*MPMQDNPANLLTK 161
            Q   ++A NP  H R K I + YH+ ++++    + L  +P ++  A++ TK
Sbjct: 1333 QGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTK 1384


>sp|Q07845|GRC3_YEAST Protein GRC3 OS=Saccharomyces cerevisiae
           GN=GRC3 PE=2 SV=1
          Length = 632

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +1

Query: 178 SEKFKALGLLPFVD*SHRVLHIHVHECHTQ 267
           S+ F  LGL+  +D S ++++I+V  CHTQ
Sbjct: 533 SKNFITLGLIHSIDTSQQIMNIYVPPCHTQ 562


>sp|Q7TNN8|LPIN3_MUSSP Lipin-3 OS=Mus spretus GN=Lpin3 PE=2 SV=1
          Length = 847

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
 Frame = +1

Query: 124 CLCKTILLIF*QRTKALRSE------KFKALG-LLPFV--D*SHRVLHIHVHECHTQ*YR 276
           C CK  + ++    K + S+      K  ALG +LP +  D +H+ +    H+ H   Y+
Sbjct: 621 CRCKATIYLWNWDDKVVISDIDGTITKSDALGHILPQLGKDWTHQGITSLYHKIHLNGYK 680

Query: 277 FLYCYSRNKG 306
           FLYC +R  G
Sbjct: 681 FLYCSARAIG 690


>sp|Q99PI4|LPIN3_MOUSE Lipin-3 OS=Mus musculus GN=Lpin3 PE=1 SV=1
          Length = 848

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
 Frame = +1

Query: 124 CLCKTILLIF*QRTKALRSE------KFKALG-LLPFV--D*SHRVLHIHVHECHTQ*YR 276
           C CK  + ++    K + S+      K  ALG +LP +  D +H+ +    H+ H   Y+
Sbjct: 622 CRCKATIYLWNWDDKVVISDIDGTITKSDALGHILPQLGKDWTHQGITSLYHKIHLNGYK 681

Query: 277 FLYCYSRNKG 306
           FLYC +R  G
Sbjct: 682 FLYCSARAIG 691
tr_hit_id A5B1U5
Definition tr|A5B1U5|A5B1U5_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 65
Score (bit) 51.6
E-value 2.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920041|Adiantum capillus-veneris mRNA, clone:
YMU001_000132_D04.
         (403 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5B1U5|A5B1U5_VITVI Putative uncharacterized protein OS=Vitis...    52   2e-05
tr|A5BSK1|A5BSK1_VITVI Putative uncharacterized protein OS=Vitis...    50   4e-05
tr|A5B979|A5B979_VITVI Putative uncharacterized protein OS=Vitis...    50   4e-05
tr|A5B570|A5B570_VITVI Putative uncharacterized protein OS=Vitis...    50   4e-05
tr|A5C7V7|A5C7V7_VITVI Putative uncharacterized protein OS=Vitis...    50   6e-05
tr|A5BGK7|A5BGK7_VITVI Putative uncharacterized protein OS=Vitis...    50   7e-05
tr|A5AKW8|A5AKW8_VITVI Putative uncharacterized protein OS=Vitis...    50   7e-05
tr|A5BUG6|A5BUG6_VITVI Putative uncharacterized protein OS=Vitis...    49   9e-05
tr|A5ATC8|A5ATC8_VITVI Putative uncharacterized protein OS=Vitis...    49   9e-05
tr|Q8T5U5|Q8T5U5_DROME Polyprotein OS=Drosophila melanogaster GN...    49   9e-05
tr|Q45W66|Q45W66_PHACH Polyprotein OS=Phanerochaete chrysosporiu...    49   9e-05
tr|O82196|O82196_ARATH Copia-like retroelement pol polyprotein O...    49   1e-04
tr|A5BQ73|A5BQ73_VITVI Putative uncharacterized protein OS=Vitis...    49   2e-04
tr|A5BM89|A5BM89_VITVI Putative uncharacterized protein OS=Vitis...    49   2e-04
tr|A5BDZ8|A5BDZ8_VITVI Putative uncharacterized protein OS=Vitis...    49   2e-04
tr|A5B3T3|A5B3T3_VITVI Putative uncharacterized protein OS=Vitis...    48   2e-04
tr|A5B195|A5B195_VITVI Putative uncharacterized protein OS=Vitis...    48   2e-04
tr|Q94FM1|Q94FM1_CITPA Pol polyprotein OS=Citrus paradisi GN=pol...    48   3e-04
tr|A5BFR8|A5BFR8_VITVI Putative uncharacterized protein OS=Vitis...    48   3e-04
tr|A5AQ25|A5AQ25_VITVI Putative uncharacterized protein OS=Vitis...    47   4e-04
tr|Q2QW17|Q2QW17_ORYSJ Retrotransposon protein, putative, Ty1-co...    47   5e-04
tr|B5DSS0|B5DSS0_DROPS GA28119 OS=Drosophila pseudoobscura pseud...    46   8e-04
tr|B5DSH8|B5DSH8_DROPS GA27695 OS=Drosophila pseudoobscura pseud...    46   8e-04
tr|B5DSH7|B5DSH7_DROPS GA27696 OS=Drosophila pseudoobscura pseud...    46   8e-04
tr|Q75HA9|Q75HA9_ORYSJ Putative polyprotein (Retrotransposon pro...    46   0.001
tr|A5C219|A5C219_VITVI Putative uncharacterized protein OS=Vitis...    46   0.001
tr|A5BJX0|A5BJX0_VITVI Putative uncharacterized protein OS=Vitis...    46   0.001
tr|A5BGA0|A5BGA0_VITVI Putative uncharacterized protein OS=Vitis...    46   0.001
tr|Q0JNP3|Q0JNP3_ORYSJ Os01g0275200 protein OS=Oryza sativa subs...    45   0.001
tr|A5BIL9|A5BIL9_VITVI Putative uncharacterized protein OS=Vitis...    45   0.001

>tr|A5B1U5|A5B1U5_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_005976 PE=4 SV=1
          Length = 1380

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 26/65 (40%), Positives = 43/65 (66%)
 Frame = +3

Query: 9    SASAVAKNPMVHARTKPI*VYYHYVKDRLFAREVNLA*MPMQDNPANLLTKDEGSA**EV 188
            SA  +AKNP+ HARTK I +Y H+++D++   ++ L  +P ++ P +LLTK   S+    
Sbjct: 1003 SAYHMAKNPVFHARTKHIEIYLHFIRDQVMRGKIQLHFVPTEEQPTDLLTKHLTSS--RE 1060

Query: 189  QSFRL 203
            +SF+L
Sbjct: 1061 ESFQL 1065


>tr|A5BSK1|A5BSK1_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_001716 PE=4 SV=1
          Length = 1319

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 23/51 (45%), Positives = 36/51 (70%)
 Frame = +3

Query: 9    SASAVAKNPMVHARTKPI*VYYHYVKDRLFAREVNLA*MPMQDNPANLLTK 161
            SA  +AKNP+ HARTK I +  H+++D++   ++ L  +P +D PA+LLTK
Sbjct: 1257 SAYHMAKNPVFHARTKHIEIDLHFIRDQVIRGKIQLHFVPTEDQPADLLTK 1307


>tr|A5B979|A5B979_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_009554 PE=4 SV=1
          Length = 1282

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 23/51 (45%), Positives = 36/51 (70%)
 Frame = +3

Query: 9    SASAVAKNPMVHARTKPI*VYYHYVKDRLFAREVNLA*MPMQDNPANLLTK 161
            SA  +AKNP+ HARTK I +  H+++D++   ++ L  +P +D PA+LLTK
Sbjct: 1193 SAYHMAKNPVFHARTKHIEIDLHFIRDQVIRGKIQLHFVPTEDQPADLLTK 1243


>tr|A5B570|A5B570_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_027734 PE=4 SV=1
          Length = 1635

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 23/51 (45%), Positives = 36/51 (70%)
 Frame = +3

Query: 9    SASAVAKNPMVHARTKPI*VYYHYVKDRLFAREVNLA*MPMQDNPANLLTK 161
            SA  +AKNP+ HARTK I +  H+++D++   ++ L  +P +D PA+LLTK
Sbjct: 1119 SAYHMAKNPVFHARTKHIEIDLHFIRDQVIRGKIQLHFVPTEDQPADLLTK 1169


>tr|A5C7V7|A5C7V7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_041885 PE=4 SV=1
          Length = 408

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 22/52 (42%), Positives = 36/52 (69%)
 Frame = +3

Query: 6   QSASAVAKNPMVHARTKPI*VYYHYVKDRLFAREVNLA*MPMQDNPANLLTK 161
           QSA  +A+NP+ HARTK + V+YH++++++   EV L  +  +D  A+L TK
Sbjct: 329 QSAVRLAENPVFHARTKHVEVHYHFIREKVLEEEVELKQIKSEDQVADLFTK 380


>tr|A5BGK7|A5BGK7_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_007301 PE=4 SV=1
          Length = 973

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 22/52 (42%), Positives = 36/52 (69%)
 Frame = +3

Query: 6    QSASAVAKNPMVHARTKPI*VYYHYVKDRLFAREVNLA*MPMQDNPANLLTK 161
            QSA  +A+NP+ HARTK + V+YH++++++   EV L  +  +D  A+L TK
Sbjct: 894  QSAVRLAENPVFHARTKHVEVHYHFIREKVLEEEVELKQIKSKDQVADLFTK 945


>tr|A5AKW8|A5AKW8_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_027864 PE=4 SV=1
          Length = 1300

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 22/52 (42%), Positives = 36/52 (69%)
 Frame = +3

Query: 6    QSASAVAKNPMVHARTKPI*VYYHYVKDRLFAREVNLA*MPMQDNPANLLTK 161
            QSA  +A+NP+ HARTK + V+YH++++++   EV L  +  +D  A+L TK
Sbjct: 1221 QSAVRLAENPVFHARTKHVEVHYHFIREKVLKEEVELNQIKSEDQVADLFTK 1272


>tr|A5BUG6|A5BUG6_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_005638 PE=4 SV=1
          Length = 1198

 Score = 49.3 bits (116), Expect = 9e-05
 Identities = 22/51 (43%), Positives = 36/51 (70%)
 Frame = +3

Query: 9    SASAVAKNPMVHARTKPI*VYYHYVKDRLFAREVNLA*MPMQDNPANLLTK 161
            +A  +AKNP+ HARTK I +  H+++D++   ++ L  +P +D PA+LLTK
Sbjct: 1136 NAYHMAKNPVFHARTKHIEIDLHFIRDQVIRGKIQLHFVPTEDQPADLLTK 1186


>tr|A5ATC8|A5ATC8_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_035520 PE=4 SV=1
          Length = 1083

 Score = 49.3 bits (116), Expect = 9e-05
 Identities = 23/51 (45%), Positives = 35/51 (68%)
 Frame = +3

Query: 9    SASAVAKNPMVHARTKPI*VYYHYVKDRLFAREVNLA*MPMQDNPANLLTK 161
            SA  +AKNP+ HARTK I +  H++ D++   ++ L  +P +D PA+LLTK
Sbjct: 993  SAYHMAKNPVFHARTKHIEIDLHFIXDQVIRGKIQLHFVPTEDQPADLLTK 1043


>tr|Q8T5U5|Q8T5U5_DROME Polyprotein OS=Drosophila melanogaster
           GN=polyprotein PE=4 SV=1
          Length = 415

 Score = 49.3 bits (116), Expect = 9e-05
 Identities = 23/51 (45%), Positives = 37/51 (72%)
 Frame = +3

Query: 9   SASAVAKNPMVHARTKPI*VYYHYVKDRLFAREVNLA*MPMQDNPANLLTK 161
           SAS++AKNP+ H RTK I V YH+++D++   E+ +  +  Q+N A++LTK
Sbjct: 349 SASSIAKNPINHKRTKHIDVRYHFIRDKVNKNEIIVEYVNTQNNVADILTK 399