BP920042
Clone id YMU001_000132_D05
Library
Length 442
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000132_D05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CTCCTGGCGCTGCATGTCCTTTACTCACTAATTGTTGTGCATCACCACCGGAGGATGAAA
GGAAAGCATCCTTCAATGCTTCCAGCAGCATGTCCAACAGTTTTAAATCTAATACAAGCA
GTGGAGTAAGGGTAGGAACCGTAAATATCTGCACTGAAAAGCTGCTCAGAGCAGCACTTT
CTCTTGCTCGACTTCCATTAGGTGATTCTAGGCTTTGCCTCAAGCCATCTTGAATAAAAT
GTGGGTAATTGCGAATAAATGTTTTTGCAAACTGGCATTTAAAGCTTGGATTTCCCATCA
ACTTGGACAGAAGTTCATGAAGTTTATTTAAGGCTTTCTCCGGAAGAAAGCATTCACTCT
TAAGTAAAACATCAAGTAAGCCAATATTTTCAGATGCTATCAATCTACCAGAACATGTCA
ATAGGCTCTCACTGCAGTTGCA
■■Homology search results ■■ -
sp_hit_id Q896N5
Definition sp|Q896N5|SYR_CLOTE Arginyl-tRNA synthetase OS=Clostridium tetani
Align length 78
Score (bit) 29.3
E-value 7.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920042|Adiantum capillus-veneris mRNA, clone:
YMU001_000132_D05.
(442 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q896N5|SYR_CLOTE Arginyl-tRNA synthetase OS=Clostridium tetan... 29 7.7
sp|Q9P7R5|GFH1_SCHPO Gamma-tubulin complex component gfh1 OS=Sch... 29 7.7

>sp|Q896N5|SYR_CLOTE Arginyl-tRNA synthetase OS=Clostridium tetani
GN=argS PE=3 SV=1
Length = 563

Score = 29.3 bits (64), Expect = 7.7
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = -1

Query: 379 LLDVLLKSECFLPEKALNKLHELLSKL-MGNPSFKC-QFAKTFIRNYPHFIQDGLRQSLE 206
L+ L S LP + + KL E+ K MG+ +F C Q AKTF R P+ I + L+ +
Sbjct: 6 LISERLSSIIELPIEDIEKLIEIPPKPEMGDFAFPCFQLAKTF-RKAPNMIAEELKDKFD 64

Query: 205 SPNGSRARESAALSSFSV 152
N + +F V
Sbjct: 65 KSNFEKVENLGPYLNFFV 82


>sp|Q9P7R5|GFH1_SCHPO Gamma-tubulin complex component gfh1
OS=Schizosaccharomyces pombe GN=gfh1 PE=2 SV=1
Length = 577

Score = 29.3 bits (64), Expect = 7.7
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Frame = -1

Query: 400 IASENIGLLDVLLKSECFLPEKALNKLHELLSKLMGNPSFKCQF----AKTFI---RNYP 242
+ S ++ ++L+ EC + L++L + L G+ SFKC F K F+ N P
Sbjct: 156 MGSTHLNFKKLVLECECAFQKTWLDELVQYLVNDSGDDSFKCSFLCGDTKDFVSCSNNVP 215

Query: 241 HFIQD 227
QD
Sbjct: 216 FLTQD 220


tr_hit_id A9TX84
Definition tr|A9TX84|A9TX84_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 104
Score (bit) 93.6
E-value 4.0e-18
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920042|Adiantum capillus-veneris mRNA, clone:
YMU001_000132_D05.
(442 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9TX84|A9TX84_PHYPA Predicted protein OS=Physcomitrella paten... 94 4e-18
tr|A9SMY6|A9SMY6_PHYPA Predicted protein (Fragment) OS=Physcomit... 94 4e-18
tr|A9RY58|A9RY58_PHYPA Predicted protein OS=Physcomitrella paten... 82 1e-14
tr|A9SDB1|A9SDB1_PHYPA Predicted protein (Fragment) OS=Physcomit... 82 2e-14
tr|A9RJ20|A9RJ20_PHYPA Predicted protein OS=Physcomitrella paten... 81 3e-14
tr|Q9LZ95|Q9LZ95_ARATH Ubiquitin-protein ligase E3-alpha-like pr... 77 3e-13
tr|A7PNM8|A7PNM8_VITVI Chromosome chr8 scaffold_23, whole genome... 74 4e-12
tr|Q0JQP7|Q0JQP7_ORYSJ Os01g0148000 protein OS=Oryza sativa subs... 74 5e-12
tr|B8AD94|B8AD94_ORYSI Putative uncharacterized protein OS=Oryza... 74 5e-12
tr|A2ZP89|A2ZP89_ORYSJ Putative uncharacterized protein OS=Oryza... 74 5e-12
tr|Q1JTI8|Q1JTI8_TOXGO Putative uncharacterized protein OS=Toxop... 35 2.4
tr|B6KUI2|B6KUI2_TOXGO Putative uncharacterized protein OS=Toxop... 35 2.4
tr|A8SME3|A8SME3_9FIRM Putative uncharacterized protein OS=Parvi... 33 5.4
tr|A8JJF0|A8JJF0_CHLRE Predicted protein (Fragment) OS=Chlamydom... 33 9.2
tr|A8ITS2|A8ITS2_CHLRE Predicted protein OS=Chlamydomonas reinha... 33 9.2

>tr|A9TX84|A9TX84_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_152183 PE=4 SV=1
Length = 2048

Score = 93.6 bits (231), Expect = 4e-18
Identities = 43/104 (41%), Positives = 74/104 (71%), Gaps = 3/104 (2%)
Frame = -1

Query: 442 CNCSESLLTCSGRLIASENIGLLDVLLKSECFLPEKALNKLHELLSKLMGNPSFKCQFAK 263
C+ E +L + L+ + ++GLLD L+ +ECFLP++ +N LHELL KL+G+ +FK FA+
Sbjct: 243 CSFGEPMLAFTAELVGNRSLGLLDTLMSTECFLPKRCVNSLHELLYKLLGDTNFKHTFAQ 302

Query: 262 TFIRNYPHFIQDGLRQ---SLESPNGSRARESAALSSFSVQIFT 140
TFI +YP ++++ +++ + + + S+ R+ A ++SFSVQIFT
Sbjct: 303 TFILHYPFYLRETIKEDAAAAGTSSRSKHRDPAVVNSFSVQIFT 346


>tr|A9SMY6|A9SMY6_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_132476 PE=4 SV=1
Length = 1995

Score = 93.6 bits (231), Expect = 4e-18
Identities = 56/148 (37%), Positives = 75/148 (50%), Gaps = 3/148 (2%)
Frame = -1

Query: 442 CNCSESLLTCSGRLIASENIGLLDVLLKSECFLPEKALNKLHELLSKLMGNPSFKCQFAK 263
C+ E +L + L+ G+LD L+ +E FLP+ LHELL KL+G+ +FK FA+
Sbjct: 239 CSYGEPMLAFTAELMGKNESGILDSLMNTEYFLPKSVRTSLHELLYKLLGDSNFKLSFAQ 298

Query: 262 TFIRNYPHFIQDGLRQ---SLESPNGSRARESAALSSFSVQIFTXXXXXXXXXXXXXXXX 92
FI +YP F QD + + S SP S+ RE L+SFSVQIFT
Sbjct: 299 VFISHYPKFFQDSVAEENASTGSPAISKYREQTILNSFSVQIFTVPTLTPKLVMESRLLD 358

Query: 91 XXXXXXXXAFLSSSGGDAQQLVSKGHAA 8
F + SG D + LVSKG A
Sbjct: 359 MLLDTLKEFFRACSGEDGRLLVSKGPVA 386


>tr|A9RY58|A9RY58_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_161713 PE=4 SV=1
Length = 2612

Score = 82.4 bits (202), Expect = 1e-14
Identities = 51/145 (35%), Positives = 72/145 (49%), Gaps = 3/145 (2%)
Frame = -1

Query: 442 CNCSESLLTCSGRLIASENIGLLDVLLKSECFLPEKALNKLHELLSKLMGNPSFKCQFAK 263
C+ E++L L+ G+LD L+ +E FLP+ LHELL KL+G+ +FK FAK
Sbjct: 264 CSYGETMLAFIADLMGKNASGILDTLMNTEHFLPKPVSASLHELLYKLLGDSNFKLSFAK 323

Query: 262 TFIRNYPHFIQDGL---RQSLESPNGSRARESAALSSFSVQIFTXXXXXXXXXXXXXXXX 92
FI +YP F +D ++ + S+ E A L+SFSVQIFT
Sbjct: 324 VFISHYPKFFKDSAAAESAAIGITSTSKYSEQAILNSFSVQIFTVPTLTPKLVIESRLLE 383

Query: 91 XXXXXXXXAFLSSSGGDAQQLVSKG 17
FL+ +G D + L SKG
Sbjct: 384 MLLGTLKEFFLACAGEDGRLLGSKG 408


>tr|A9SDB1|A9SDB1_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_127907 PE=4 SV=1
Length = 2015

Score = 81.6 bits (200), Expect = 2e-14
Identities = 40/104 (38%), Positives = 67/104 (64%), Gaps = 3/104 (2%)
Frame = -1

Query: 442 CNCSESLLTCSGRLIASENIGLLDVLLKSECFLPEKALNKLHELLSKLMGNPSFKCQFAK 263
C+ E +L + ++ + ++GL+D L+ +ECFLP++ + L ELL KL+G+ FK FA+
Sbjct: 243 CSFGEPMLAFTAEVVGNRSLGLVDTLMGTECFLPDRCVKHLQELLYKLLGDTKFKHTFAQ 302

Query: 262 TFIRNYPHFIQDGLRQS---LESPNGSRARESAALSSFSVQIFT 140
TFI +YP +++ ++ L S + RE + ++SFSVQIFT
Sbjct: 303 TFISHYPACLRETFKEDAAVLGSLTRKKYREHSIVNSFSVQIFT 346


>tr|A9RJ20|A9RJ20_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_66784 PE=4 SV=1
Length = 654

Score = 80.9 bits (198), Expect = 3e-14
Identities = 48/145 (33%), Positives = 72/145 (49%), Gaps = 3/145 (2%)
Frame = -1

Query: 442 CNCSESLLTCSGRLIASENIGLLDVLLKSECFLPEKALNKLHELLSKLMGNPSFKCQFAK 263
C+ E++L L+ G+LD L+ ++ FLP+ LHELL K++GN +FK FAK
Sbjct: 296 CSHDETMLAFIADLMGKNASGILDTLMNTKHFLPKPVSASLHELLYKILGNSNFKLSFAK 355

Query: 262 TFIRNYPHFIQDGL---RQSLESPNGSRARESAALSSFSVQIFTXXXXXXXXXXXXXXXX 92
F+ +YP F +D ++ + ++ E A L+SFSVQIFT
Sbjct: 356 VFVSHYPKFFEDSAAAESAAIGITSANKYSEHAILNSFSVQIFTIPTLTPKLVIESRLLE 415

Query: 91 XXXXXXXXAFLSSSGGDAQQLVSKG 17
FL+ +G D + L SKG
Sbjct: 416 MLLGTLKEFFLACAGEDGRLLGSKG 440


>tr|Q9LZ95|Q9LZ95_ARATH Ubiquitin-protein ligase E3-alpha-like
protein OS=Arabidopsis thaliana GN=T1E22_60 PE=4 SV=1
Length = 1225

Score = 77.4 bits (189), Expect = 3e-13
Identities = 44/98 (44%), Positives = 63/98 (64%)
Frame = -1

Query: 433 SESLLTCSGRLIASENIGLLDVLLKSECFLPEKALNKLHELLSKLMGNPSFKCQFAKTFI 254
SESLL+ R I S + GLL +LLK+E FL + + KLH+L KL+G+P FKC+FAK F+
Sbjct: 261 SESLLSFVSRRIISSS-GLLSILLKAERFLDQDVMKKLHDLFLKLIGDPVFKCEFAKAFV 319

Query: 253 RNYPHFIQDGLRQSLESPNGSRARESAALSSFSVQIFT 140
YP I + ++Q + + ++ LS+FSVQI T
Sbjct: 320 SYYPVVISEVVKQGTD----NAFKKYPLLSTFSVQILT 353


>tr|A7PNM8|A7PNM8_VITVI Chromosome chr8 scaffold_23, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00021321001
PE=4 SV=1
Length = 1953

Score = 73.9 bits (180), Expect = 4e-12
Identities = 51/142 (35%), Positives = 72/142 (50%), Gaps = 1/142 (0%)
Frame = -1

Query: 442 CNCSESLLT-CSGRLIASENIGLLDVLLKSECFLPEKALNKLHELLSKLMGNPSFKCQFA 266
C SESLL+ S R+ S+ GLLD L+++E FL ++ KLHELL KL+G P FK +FA
Sbjct: 176 CQYSESLLSFISKRVFISD--GLLDSLVRAERFLSKRVTRKLHELLLKLLGEPVFKYEFA 233

Query: 265 KTFIRNYPHFIQDGLRQSLESPNGSRARESAALSSFSVQIFTXXXXXXXXXXXXXXXXXX 86
K F+ YP + + ++ +S + LS+FSVQIFT
Sbjct: 234 KVFLSYYPILVNEAIKGCSDSV----FKNYPLLSTFSVQIFTVPTLTPRLVKEMNLLALL 289

Query: 85 XXXXXXAFLSSSGGDAQQLVSK 20
F S +G D + V+K
Sbjct: 290 MGCLGDIFCSCAGEDGRLQVTK 311


>tr|Q0JQP7|Q0JQP7_ORYSJ Os01g0148000 protein OS=Oryza sativa subsp.
japonica GN=Os01g0148000 PE=4 SV=1
Length = 1980

Score = 73.6 bits (179), Expect = 5e-12
Identities = 47/101 (46%), Positives = 61/101 (60%)
Frame = -1

Query: 442 CNCSESLLTCSGRLIASENIGLLDVLLKSECFLPEKALNKLHELLSKLMGNPSFKCQFAK 263
C+CSESLL+ + I E LLD L K+E L +KA+ KLHELL KL+ P+FK FAK
Sbjct: 256 CSCSESLLSFVAQRIC-ECPDLLDALTKAERLLDKKAVKKLHELLLKLISEPAFKYDFAK 314

Query: 262 TFIRNYPHFIQDGLRQSLESPNGSRARESAALSSFSVQIFT 140
FI YP + G + ++ N S E + +FSVQIFT
Sbjct: 315 VFIHYYP--VTFG--EVIKGCNDSLLEEYPLMPTFSVQIFT 351


>tr|B8AD94|B8AD94_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_00390 PE=4 SV=1
Length = 1949

Score = 73.6 bits (179), Expect = 5e-12
Identities = 47/101 (46%), Positives = 61/101 (60%)
Frame = -1

Query: 442 CNCSESLLTCSGRLIASENIGLLDVLLKSECFLPEKALNKLHELLSKLMGNPSFKCQFAK 263
C+CSESLL+ + I E LLD L K+E L +KA+ KLHELL KL+ P+FK FAK
Sbjct: 256 CSCSESLLSFVAQRIC-ECPDLLDALTKAERLLDKKAVKKLHELLLKLISEPAFKYDFAK 314

Query: 262 TFIRNYPHFIQDGLRQSLESPNGSRARESAALSSFSVQIFT 140
FI YP + G + ++ N S E + +FSVQIFT
Sbjct: 315 VFIHYYP--VTFG--EVIKGCNDSLLEEYPLMPTFSVQIFT 351


>tr|A2ZP89|A2ZP89_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_000361 PE=4 SV=1
Length = 1906

Score = 73.6 bits (179), Expect = 5e-12
Identities = 47/101 (46%), Positives = 61/101 (60%)
Frame = -1

Query: 442 CNCSESLLTCSGRLIASENIGLLDVLLKSECFLPEKALNKLHELLSKLMGNPSFKCQFAK 263
C+CSESLL+ + I E LLD L K+E L +KA+ KLHELL KL+ P+FK FAK
Sbjct: 256 CSCSESLLSFVAQRIC-ECPDLLDALTKAERLLDKKAVKKLHELLLKLISEPAFKYDFAK 314

Query: 262 TFIRNYPHFIQDGLRQSLESPNGSRARESAALSSFSVQIFT 140
FI YP + G + ++ N S E + +FSVQIFT
Sbjct: 315 VFIHYYP--VTFG--EVIKGCNDSLLEEYPLMPTFSVQIFT 351