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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920050
Clone id YMU001_000132_E01
Library
Length 543
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000132_E01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGTTAATGGGCCTGACAGTCTCAGCACTGTTGTCATAGCAGTAGAGATGACAAAATCGAC
TAGTCCGATAAGTGAAGGTCGAGTTTTACGGAAGCGGGGAGTGACTTCTGATGAGCAAGC
TTTGCCTGAATCAAAAAAGATAGACGCTTCAAAAAGTCCTCGAAGGTCCTCCCGCTTCTC
TAATGGAGCAGGTGAACCTCTGGGACTGGAGGTTTTGGAAAAGGGCAAAGCTAAACCAGC
CATTGTCGAAAGTGAAGTTAAAGTTTTACGGAAACGCAGCTTTGTCGTAGAGCAGCAAGT
CCAAACACAGGATTCTGTCGAGTCTGATGAAGAGGAGACTACGGTGACATGGCGAAGCCG
CAGACGAAAAGTTCAGTGAAATAGGTGCTCCCTTATGAAGAGTTTGCCAACAAAATGTGT
TTAAAACCCATCTTCAAGGACGGCATAGTTGACCTGCAGGAGTTTCTCATTAGCATATAA
AACTGAGTGTCCTCTTTTGAGGAGAGGCCAGGTAAAAACTTTTAGATCTATGGATCAAGT
CTG
■■Homology search results ■■ -
sp_hit_id Q0AP92
Definition sp|Q0AP92|HUTH_MARMM Histidine ammonia-lyase OS=Maricaulis maris (strain MCS10)
Align length 86
Score (bit) 32.0
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920050|Adiantum capillus-veneris mRNA, clone:
YMU001_000132_E01.
         (543 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q0AP92|HUTH_MARMM Histidine ammonia-lyase OS=Maricaulis maris...    32   2.0  
sp|Q08346|PRIM_HAEIN DNA primase OS=Haemophilus influenzae GN=dn...    31   4.4  
sp|Q2UQ97|SLD2_ASPOR DNA replication regulator sld2 OS=Aspergill...    30   5.8  
sp|P34712|MDR1_CAEEL Multidrug resistance protein 1 OS=Caenorhab...    30   5.8  
sp|A4VRV9|HIS6_PSEU5 Imidazole glycerol phosphate synthase subun...    30   5.8  
sp|Q8FYV0|THIP_BRUSU Thiamine transport system permease protein ...    30   9.9  
sp|Q8YJ03|THIP_BRUME Thiamine transport system permease protein ...    30   9.9  
sp|Q57BC3|THIP_BRUAB Thiamine transport system permease protein ...    30   9.9  
sp|Q2YLW7|THIP_BRUA2 Thiamine transport system permease protein ...    30   9.9  
sp|Q2YW62|FNBA_STAAB Fibronectin-binding protein A OS=Staphyloco...    30   9.9  
sp|P24588|AKAP5_HUMAN A-kinase anchor protein 5 OS=Homo sapiens ...    30   9.9  

>sp|Q0AP92|HUTH_MARMM Histidine ammonia-lyase OS=Maricaulis maris
           (strain MCS10) GN=hutH PE=3 SV=1
          Length = 507

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
 Frame = -1

Query: 255 SLSTMAGLALPFS-KTSSPRGSPAPLEKREDLRGLFEASIFFDSGKACSSEVTPRFRKTR 79
           S+    G   PF  +  S RG P  ++    LRGL + S    S + C     P   + +
Sbjct: 225 SVDAAKGSVAPFDPRIHSLRGHPGQIDVAAALRGLLDGSGILSSHEGCEKIQDPYCLRCQ 284

Query: 78  PSLIGLVDFVISTAMTTVLRLSGPLT 1
           P ++G V  ++  A   + R +  +T
Sbjct: 285 PQVMGAVLDLLRQAGAVLEREANAVT 310


>sp|Q08346|PRIM_HAEIN DNA primase OS=Haemophilus influenzae GN=dnaG
           PE=3 SV=1
          Length = 593

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
 Frame = -1

Query: 282 KLRFRKTLTSLSTMAGLALPFSKTSSPRGSP-APLEKREDLRGLF-EASIFFDSGKACSS 109
           KL F + +  L+ MAGL +P+ K  +  G P A  + + +L  L  E + F+ +    ++
Sbjct: 79  KLEFIEAIEELAAMAGLEIPYEKRVNHSGKPQANYQTKRNLYELMQEIATFYQNQLPLNT 138

Query: 108 EVTP--RFRKTRPSLIGLVDF-VISTAMTTVLRLSG 10
           +     + R   P +I       +  AM TVLR  G
Sbjct: 139 QAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKFG 174


>sp|Q2UQ97|SLD2_ASPOR DNA replication regulator sld2 OS=Aspergillus
           oryzae GN=sld2 PE=3 SV=1
          Length = 527

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
 Frame = -1

Query: 225 PFSKTSSPRGSPA---PLEKREDLRGLFEASIFFDSGKACSSEVTPRFRKTRPSLIGLVD 55
           PF+  S PRG P+   P +    LR LF  S    S     + + P  ++   +L GL D
Sbjct: 108 PFTTPSKPRGHPSEFDPYDSPSALRRLFSPSTHQQSSSPLKTAIGPTPQRDGKAL-GLFD 166

Query: 54  FVI----STAMTTVLRLS 13
            +     STA  T  RL+
Sbjct: 167 LLSESGGSTATPTAARLA 184


>sp|P34712|MDR1_CAEEL Multidrug resistance protein 1
           OS=Caenorhabditis elegans GN=pgp-1 PE=2 SV=2
          Length = 1321

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -1

Query: 138 FFDSGKACSSEVTPRFRKTRPSLIGLVDFVISTAMTTVLRL 16
           FFDS +  S +++ R     P+L   +DF  ST +TT++ +
Sbjct: 844 FFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSM 884


>sp|A4VRV9|HIS6_PSEU5 Imidazole glycerol phosphate synthase subunit
           hisF OS=Pseudomonas stutzeri (strain A1501) GN=hisF PE=3
           SV=1
          Length = 256

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 128 ESKKIDASKSPRRSSRFSNGAGEPLGLEVLEKGKAKPAIVESEV 259
           ++KK+ A   P R   F++G  +P GL+ +E  K   A+   E+
Sbjct: 131 DAKKVSAPGEPGRWEIFTHGGRKPTGLDAVEWAKKMEALGAGEI 174


>sp|Q8FYV0|THIP_BRUSU Thiamine transport system permease protein
           thiP OS=Brucella suis GN=thiP PE=3 SV=1
          Length = 543

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 99  PRFRKTRPSLIGLVDFVISTAMTTVLRLSG 10
           P  R++ P +IGLV  +  T+ TTVL L G
Sbjct: 197 PVIRRSLPGMIGLVFMLCVTSFTTVLTLGG 226


>sp|Q8YJ03|THIP_BRUME Thiamine transport system permease protein
           thiP OS=Brucella melitensis GN=thiP PE=3 SV=2
          Length = 543

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 99  PRFRKTRPSLIGLVDFVISTAMTTVLRLSG 10
           P  R++ P +IGLV  +  T+ TTVL L G
Sbjct: 197 PVIRRSLPGMIGLVFMLCVTSFTTVLTLGG 226


>sp|Q57BC3|THIP_BRUAB Thiamine transport system permease protein
           thiP OS=Brucella abortus GN=thiP PE=3 SV=1
          Length = 543

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 99  PRFRKTRPSLIGLVDFVISTAMTTVLRLSG 10
           P  R++ P +IGLV  +  T+ TTVL L G
Sbjct: 197 PVIRRSLPGMIGLVFMLCVTSFTTVLTLGG 226


>sp|Q2YLW7|THIP_BRUA2 Thiamine transport system permease protein
           thiP OS=Brucella abortus (strain 2308) GN=thiP PE=3 SV=1
          Length = 543

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 99  PRFRKTRPSLIGLVDFVISTAMTTVLRLSG 10
           P  R++ P +IGLV  +  T+ TTVL L G
Sbjct: 197 PVIRRSLPGMIGLVFMLCVTSFTTVLTLGG 226


>sp|Q2YW62|FNBA_STAAB Fibronectin-binding protein A
           OS=Staphylococcus aureus (strain bovine RF122 / ET3-1)
           GN=fnbA PE=3 SV=1
          Length = 990

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +2

Query: 20  LSTVVIAVEMTKSTSPISEGRVLRKRGVTSDEQALPESKKIDAS 151
           L TV ++  +T+ ++P  E   ++   VT+D + LP+S  +DAS
Sbjct: 376 LGTVTVSGTVTQGSNPNGEKPTVKIYEVTNDGKDLPQSVYLDAS 419
tr_hit_id B5YL60
Definition tr|B5YL60|B5YL60_THEYD Glu-trnagln amidotransferase suBunit b OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87)
Align length 72
Score (bit) 36.6
E-value 0.88
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920050|Adiantum capillus-veneris mRNA, clone:
YMU001_000132_E01.
         (543 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B5YL60|B5YL60_THEYD Glu-trnagln amidotransferase suBunit b OS...    37   0.88 
tr|A9D680|A9D680_9RHIZ Putative uncharacterized protein OS=Hoefl...    35   2.0  
tr|O31849|O31849_BACSU YojO protein OS=Bacillus subtilis GN=yojO...    35   2.6  
tr|Q008X6|Q008X6_9NIDO Replicase polyprotein 1ab OS=White bream ...    35   3.4  
tr|Q008X5|Q008X5_9NIDO Replicase polyprotein 1a OS=White bream v...    35   3.4  

>tr|B5YL60|B5YL60_THEYD Glu-trnagln amidotransferase suBunit b
           OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 /
           DSM 11347 / YP87) GN=THEYE_A1151 PE=4 SV=1
          Length = 475

 Score = 36.6 bits (83), Expect = 0.88
 Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 8/72 (11%)
 Frame = +2

Query: 83  VLRKRGVT--SDEQALPESKKIDASKSPRRSSRFSNGAGEPLGLEV-----LEKGKAKPA 241
           ++R++G+T  SD+  + E+ K   +K+P+   RF NG  + +G  V     + KGKA P 
Sbjct: 404 IVREKGLTQISDDSVIIEAIKEVMNKNPKEVERFRNGEEKLIGFFVGQVMKITKGKANPK 463

Query: 242 IVESEV-KVLRK 274
           +V   + K+L++
Sbjct: 464 LVNELIFKILKE 475


>tr|A9D680|A9D680_9RHIZ Putative uncharacterized protein OS=Hoeflea
           phototrophica DFL-43 GN=HPDFL43_09397 PE=4 SV=1
          Length = 411

 Score = 35.4 bits (80), Expect = 2.0
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
 Frame = -1

Query: 243 MAGLALPFSKTSSPRGSPAPLEKREDLRGLFEASIFFDSGKACSSEVTPRFRKTR---PS 73
           +AGLALPF +  + R  P+   +R D R    A++     +     + PRFRK R   P 
Sbjct: 171 IAGLALPFDQVETRRYKPSSKPRRIDPRATMRAAM-----RTGGDLILPRFRKRRKVHPP 225

Query: 72  LIGLVDFVISTAMTTVLRL 16
           L+ + D  IS +M+   R+
Sbjct: 226 LVIIAD--ISGSMSQYTRI 242


>tr|O31849|O31849_BACSU YojO protein OS=Bacillus subtilis GN=yojO
           PE=4 SV=1
          Length = 661

 Score = 35.0 bits (79), Expect = 2.6
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -2

Query: 218 PKPPVPEVHLLH*RSGRTFEDFLKRLSFLIQAKLAHQKSLP 96
           P+P   E  L + +  +T E + KRL  +IQ  L H+K+LP
Sbjct: 389 PQPATSEEELSYKQQAKTIESYQKRLKQMIQKTLEHKKTLP 429


>tr|Q008X6|Q008X6_9NIDO Replicase polyprotein 1ab OS=White bream virus
            GN=pp1ab PE=4 SV=1
          Length = 6872

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 17/33 (51%), Positives = 23/33 (69%)
 Frame = -1

Query: 255  SLSTMAGLALPFSKTSSPRGSPAPLEKREDLRG 157
            SLS++A  A P S TSSP  SP PL+++  L+G
Sbjct: 1006 SLSSVASTAPPTSPTSSPTPSPTPLQQQVGLKG 1038


>tr|Q008X5|Q008X5_9NIDO Replicase polyprotein 1a OS=White bream virus
            GN=pp1a PE=4 SV=1
          Length = 4555

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 17/33 (51%), Positives = 23/33 (69%)
 Frame = -1

Query: 255  SLSTMAGLALPFSKTSSPRGSPAPLEKREDLRG 157
            SLS++A  A P S TSSP  SP PL+++  L+G
Sbjct: 1006 SLSSVASTAPPTSPTSSPTPSPTPLQQQVGLKG 1038