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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920054
Clone id YMU001_000132_E05
Library
Length 545
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000132_E05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTTTTTTTTTCAAAAAAAAGAGTCGCTCTATTATCCATTATGTTGGACTTGCCC
CTCACGCCAAGGTCTTCGATGTTTGGAAAACATATAAAGAGAACCATGCCTCACTCTACA
TCGGCAGGCAACTCCTATGATACAGTCCTGAATATCACAATACCAGAATAAAAGACAGAT
CTGCGAGCTCAGTCCCAACCCACGTCGCTACTCTGTTGCAACCAATGGACCCTCTGAGTC
GCATCCTCTACACGACAATCACATAATTTCTTGGGGGACTAACTGGTGGATCTCCCTTTG
TCCAATAGACTTTGCACGACATAAGAGGTAGACTAAAACATGCGCCTCAGAAGCTTTGTT
CACAAATATGCTGACCGGCATCATCGTCATTTTAGCTCTTTATTACCTGCATCTTGTGAA
GAACGCTTGGTCTTGTGCTTAGATTTTCTCTCCCGCTTTTTGTTTTCATCTTGAAGAGAG
GGATTCCGATAGTACTTTAGCTTGCGGTCGATCCGTTTCACATCATCCTCGTTGACAGGT
CTTAC
■■Homology search results ■■ -
sp_hit_id Q9P246
Definition sp|Q9P246|STIM2_HUMAN Stromal interaction molecule 2 OS=Homo sapiens
Align length 33
Score (bit) 33.1
E-value 0.85
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920054|Adiantum capillus-veneris mRNA, clone:
YMU001_000132_E05.
         (529 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9P246|STIM2_HUMAN Stromal interaction molecule 2 OS=Homo sap...    33   0.85 
sp|P59438|HPS5_MOUSE Hermansky-Pudlak syndrome 5 protein homolog...    32   1.9  
sp|Q796Y8|BCP_BACSU Putative peroxiredoxin ygaF OS=Bacillus subt...    30   7.2  
sp|B4SH40|ATP6_PELPB ATP synthase subunit a OS=Pelodictyon phaeo...    30   7.2  
sp|Q3ANW6|ATP6_CHLCH ATP synthase subunit a OS=Chlorobium chloro...    30   7.2  
sp|B4S6E6|ATP62_PROA2 ATP synthase subunit a 2 OS=Prosthecochlor...    30   7.2  

>sp|Q9P246|STIM2_HUMAN Stromal interaction molecule 2 OS=Homo
           sapiens GN=STIM2 PE=1 SV=2
          Length = 746

 Score = 33.1 bits (74), Expect = 0.85
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 148 QNKRQICELSPNPRRYSVATNGPSESHPLHDNH 246
           +++R I   SP P+R  +A + P  SHP H +H
Sbjct: 514 RSRRSIVPSSPQPQRAQLAPHAPHPSHPRHPHH 546


>sp|P59438|HPS5_MOUSE Hermansky-Pudlak syndrome 5 protein homolog
            OS=Mus musculus GN=Hps5 PE=2 SV=1
          Length = 1126

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +1

Query: 220  ESHPLHDNHIISWGTNWWISL---CPIDFARHKR*TKTCASEALFTNMLT 360
            E HP   +H++SWG +  I L    P DF   ++ T  C S   +   LT
Sbjct: 939  EGHPRPHSHLLSWGYSQLILLLIKLPADFTTKEKMTDICRSYGFWPGYLT 988


>sp|Q796Y8|BCP_BACSU Putative peroxiredoxin ygaF OS=Bacillus
           subtilis GN=ygaF PE=3 SV=1
          Length = 157

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +2

Query: 50  AKVFDVWKTYKENHASLYIGRQLL*YSPEYHNTRIKDRSASSVPTHVATLLQPMDPLS 223
           A+ FDVWK  K+N    Y+G +   +  +     IK+     V  HVA  LQ +  +S
Sbjct: 99  AEAFDVWKL-KKNFGKEYMGIERSTFLIDKEGRLIKEWRKVKVKDHVAEALQTLKDMS 155


>sp|B4SH40|ATP6_PELPB ATP synthase subunit a OS=Pelodictyon
           phaeoclathratiforme (strain DSM 5477 / BU-1) GN=atpB
           PE=3 SV=1
          Length = 340

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +1

Query: 271 WISLCPIDFARHKR*TKTCA-SEALFTNMLTGIIVILALYYLHLVKNAWSCA*IFSPAF 444
           WI + PI+F      TK  A +  LF NM  G IVIL+L ++  +  ++  A + S  F
Sbjct: 238 WIIMIPIEFIGLF--TKPVALTIRLFANMTAGHIVILSLIFISFILQSYIVAVVMSVPF 294


>sp|Q3ANW6|ATP6_CHLCH ATP synthase subunit a OS=Chlorobium
           chlorochromatii (strain CaD3) GN=atpB PE=3 SV=1
          Length = 345

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +1

Query: 271 WISLCPIDFARHKR*TKTCA-SEALFTNMLTGIIVILALYYLHLVKNAWSCA*IFSPAF 444
           WI + PI+F      TK  A +  LF NM  G IVIL+L ++  +  ++  A + S  F
Sbjct: 242 WIIMIPIEFIGLF--TKPVALTIRLFANMTAGHIVILSLIFISFILKSYIVAVVMSVPF 298


>sp|B4S6E6|ATP62_PROA2 ATP synthase subunit a 2 OS=Prosthecochloris
           aestuarii (strain DSM 271 / SK 413) GN=atpB2 PE=3 SV=1
          Length = 324

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = +1

Query: 259 GTNW--WISLCPIDFARHKR*TKTCA-SEALFTNMLTGIIVILALYYLHLVKNAWSCA*I 429
           GT+W  WI + PI+       TK  A +  LF NM  G IVIL+L ++  +  ++  A  
Sbjct: 220 GTHWALWIIMIPIEIIGLF--TKPFALTVRLFANMTAGHIVILSLIFISFILKSYIVAMF 277

Query: 430 FSPAF 444
            S  F
Sbjct: 278 VSVPF 282
tr_hit_id A9TM39
Definition tr|A9TM39|A9TM39_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 22
Score (bit) 38.1
E-value 0.28
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920054|Adiantum capillus-veneris mRNA, clone:
YMU001_000132_E05.
         (529 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TM39|A9TM39_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.28 
tr|B7ZVY0|B7ZVY0_HUMAN Putative uncharacterized protein OS=Homo ...    33   9.0  
tr|B3KUB5|B3KUB5_HUMAN cDNA FLJ39527 fis, clone PUAEN2003116, hi...    33   9.0  
tr|A6H8L7|A6H8L7_HUMAN STIM2 protein OS=Homo sapiens GN=STIM2 PE...    33   9.0  

>tr|A9TM39|A9TM39_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_147634 PE=4 SV=1
          Length = 308

 Score = 38.1 bits (87), Expect = 0.28
 Identities = 17/22 (77%), Positives = 19/22 (86%)
 Frame = -1

Query: 514 EDDVKRIDRKLKYYRNPSLQDE 449
           E +V+ IDRKLKY RNPSLQDE
Sbjct: 276 EAEVRHIDRKLKYCRNPSLQDE 297


>tr|B7ZVY0|B7ZVY0_HUMAN Putative uncharacterized protein OS=Homo
           sapiens PE=2 SV=1
          Length = 841

 Score = 33.1 bits (74), Expect = 9.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 148 QNKRQICELSPNPRRYSVATNGPSESHPLHDNH 246
           +++R I   SP P+R  +A + P  SHP H +H
Sbjct: 609 RSRRSIVPSSPQPQRAQLAPHAPHPSHPRHPHH 641


>tr|B3KUB5|B3KUB5_HUMAN cDNA FLJ39527 fis, clone PUAEN2003116,
           highly similar to Homo sapiens stromal interaction
           molecule 2 (STIM2), mRNA (Fragment) OS=Homo sapiens PE=2
           SV=1
          Length = 826

 Score = 33.1 bits (74), Expect = 9.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 148 QNKRQICELSPNPRRYSVATNGPSESHPLHDNH 246
           +++R I   SP P+R  +A + P  SHP H +H
Sbjct: 609 RSRRSIVPSSPQPQRAQLAPHAPHPSHPRHPHH 641


>tr|A6H8L7|A6H8L7_HUMAN STIM2 protein OS=Homo sapiens GN=STIM2 PE=2
           SV=1
          Length = 686

 Score = 33.1 bits (74), Expect = 9.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 148 QNKRQICELSPNPRRYSVATNGPSESHPLHDNH 246
           +++R I   SP P+R  +A + P  SHP H +H
Sbjct: 601 RSRRSIVPSSPQPQRAQLAPHAPHPSHPRHPHH 633