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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920062
Clone id YMU001_000132_F01
Library
Length 523
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000132_F01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ACTTTTAAGTGAGCTTCGCATTGTTATCTCTTTCGATGCTTCTTATGTAAACTACAGACA
TTTGGCAATTCTTTGTGCTTCCACACTAAGATGGTCATCTCCAGGAACAACCTTCAACCT
CTCCTGAAGCTTATCAACTGCCTCGACTATTTCCATGGGATGCATATCTGATGGTCTCTT
GAAATCTATCTTAAAGATCTTTTGAGCATTCCAAATGAGCCTTTTAAGATTTACAGGCAA
CGGCCACGAATTATCTCCCGATGGTGCAATTTCTGTACGCAGCTGTCGTCTATCTGTCTC
AAGCTTCTGAACTTCTGCATCAAACACATTGCGGAACTCCTGAATGGTTCTTAGATCTTC
CACATGCTCTGGCAACATGTAATCTGGATTCCAATTCTCTGCATCAATTTCAAACCTGTA
TGTCCTGTCAAACTCTTTTTTCTTCATCTTGATTAAATCAGCTTTCTGAGATTCTATCCA
AACAGCATCCATGCCATCTTCACCATAAAGGAATTGAATGACA
■■Homology search results ■■ -
sp_hit_id P18616
Definition sp|P18616|RPB1_ARATH DNA-directed RNA polymerase II subunit RPB1 OS=Arabidopsis thaliana
Align length 153
Score (bit) 237.0
E-value 3.0e-62
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920062|Adiantum capillus-veneris mRNA, clone:
YMU001_000132_F01.
         (523 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P18616|RPB1_ARATH DNA-directed RNA polymerase II subunit RPB1...   237   3e-62
sp|P35084|RPB1_DICDI DNA-directed RNA polymerase II subunit rpb1...   129   6e-30
sp|P35074|RPB1_CAEBR DNA-directed RNA polymerase II subunit RPB1...   115   2e-25
sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II subunit RPB1...   113   5e-25
sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II subunit RPB1...   112   1e-24
sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II subunit RPB1...   112   1e-24
sp|Q75A34|RPB1_ASHGO DNA-directed RNA polymerase II subunit RPB1...   112   1e-24
sp|A5DCV3|RPB1_PICGU DNA-directed RNA polymerase II subunit RPB1...   109   7e-24
sp|P04050|RPB1_YEAST DNA-directed RNA polymerase II subunit RPB1...   105   1e-22
sp|P36594|RPB1_SCHPO DNA-directed RNA polymerase II subunit rpb1...   105   1e-22
sp|P04052|RPB1_DROME DNA-directed RNA polymerase II subunit RPB1...   100   5e-21
sp|P14248|RPB1_PLAFD DNA-directed RNA polymerase II subunit RPB1...    74   5e-13
sp|P17545|RPB1B_TRYBB DNA-directed RNA polymerase II subunit RPB...    55   2e-07
sp|P17546|RPB1A_TRYBB DNA-directed RNA polymerase II subunit RPB...    55   2e-07
sp|P42486|RPB1_ASFB7 Probable DNA-directed RNA polymerase subuni...    37   0.074
sp|Q0W050|RL1_UNCMA 50S ribosomal protein L1P OS=Uncultured meth...    36   0.097
sp|Q8SSC4|RPB1_ENCCU DNA-directed RNA polymerase II subunit RPB1...    35   0.22 
sp|Q96RS0|TGS1_HUMAN Trimethylguanosine synthase homolog OS=Homo...    31   3.1  
sp|P06279|AMY_BACST Alpha-amylase OS=Bacillus stearothermophilus...    31   4.1  
sp|B0C230|SYP_ACAM1 Prolyl-tRNA synthetase OS=Acaryochloris mari...    30   5.3  
sp|Q99P69|NUF2_MOUSE Kinetochore protein Nuf2 OS=Mus musculus GN...    30   5.3  
sp|Q8FPT3|THIC_COREF Thiamine biosynthesis protein thiC OS=Coryn...    30   7.0  
sp|Q10146|RRP6_SCHPO Exosome complex exonuclease rrp6 OS=Schizos...    30   7.0  
sp|Q7T6X5|RPO1_MIMIV DNA-directed RNA polymerase subunit 1 OS=Ac...    30   7.0  
sp|O94666|RPC1_SCHPO DNA-directed RNA polymerase III subunit rpc...    30   7.0  
sp|Q8TDY8|NOPE_HUMAN Neighbor of punc e11 OS=Homo sapiens GN=NOP...    30   7.0  
sp|P19571|AMT6_BACS7 Glucan 1,4-alpha-maltohexaosidase OS=Bacill...    30   7.0  
sp|A5N4N9|RPOB_CLOK5 DNA-directed RNA polymerase subunit beta OS...    30   9.1  
sp|Q8W4I7|CDPKD_ARATH Calcium-dependent protein kinase 13 OS=Ara...    30   9.1  

>sp|P18616|RPB1_ARATH DNA-directed RNA polymerase II subunit RPB1
            OS=Arabidopsis thaliana GN=RPB205 PE=1 SV=2
          Length = 1840

 Score =  237 bits (604), Expect = 3e-62
 Identities = 114/153 (74%), Positives = 132/153 (86%)
 Frame = -2

Query: 522  VIQFLYGEDGMDAVWIESQKADLIKMKKKEFDRTYRFEIDAENWNPDYMLPEHVEDLRTI 343
            VIQFLYGEDGMDAVWIESQK D +KMKK EFDRT+++EID ENWNP Y+  EH+EDL+ I
Sbjct: 883  VIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDRTFKYEIDDENWNPTYLSDEHLEDLKGI 942

Query: 342  QEFRNVFDAEVQKLETDRRQLRTEIAPSGDNSWPLPVNLKRLIWNAQKIFKIDFKRPSDM 163
            +E R+VFDAE  KLETDR QL TEIA +GD++WPLPVN+KR IWNAQK FKID ++ SDM
Sbjct: 943  RELRDVFDAEYSKLETDRFQLGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRKISDM 1002

Query: 162  HPMEIVEAVDKLQERLKVVPGDDHLSVEAQRIA 64
            HP+EIV+AVDKLQERL VVPGDD LSVEAQ+ A
Sbjct: 1003 HPVEIVDAVDKLQERLLVVPGDDALSVEAQKNA 1035



 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 22/25 (88%), Positives = 23/25 (92%)
 Frame = +2

Query: 2    LLSELRIVISFDASYVNYRHLAILC 76
            LL ELR+VISFD SYVNYRHLAILC
Sbjct: 1370 LLDELRVVISFDGSYVNYRHLAILC 1394


>sp|P35084|RPB1_DICDI DNA-directed RNA polymerase II subunit rpb1
            OS=Dictyostelium discoideum GN=polr2a PE=2 SV=2
          Length = 1727

 Score =  129 bits (325), Expect = 6e-30
 Identities = 61/143 (42%), Positives = 94/143 (65%)
 Frame = -2

Query: 522  VIQFLYGEDGMDAVWIESQKADLIKMKKKEFDRTYRFEIDAENWNPDYMLPEHVEDLRTI 343
            VIQF YGEDG+D  ++E+Q  D ++    E +R YR ++D  ++   +M P  +E +R  
Sbjct: 872  VIQFAYGEDGIDGCFVENQSIDSLRKDNTELERMYRHQVDKPDYGDGWMDPLVIEHVRND 931

Query: 342  QEFRNVFDAEVQKLETDRRQLRTEIAPSGDNSWPLPVNLKRLIWNAQKIFKIDFKRPSDM 163
               R+  + E +++++DR  LR EI PSG+ +WPLPVNL+RLI NAQK+F ID +R SD+
Sbjct: 932  SLTRDTLEKEFERIKSDRSLLRNEIIPSGEANWPLPVNLRRLINNAQKLFNIDIRRVSDL 991

Query: 162  HPMEIVEAVDKLQERLKVVPGDD 94
            +P  +V  ++KL  RLK++   D
Sbjct: 992  NPAVVVLEIEKLVARLKIIATAD 1014



 Score = 43.9 bits (102), Expect = 5e-04
 Identities = 21/24 (87%), Positives = 21/24 (87%)
 Frame = +2

Query: 2    LLSELRIVISFDASYVNYRHLAIL 73
            LL ELR VISFD SYVNYRHLAIL
Sbjct: 1366 LLKELRAVISFDGSYVNYRHLAIL 1389


>sp|P35074|RPB1_CAEBR DNA-directed RNA polymerase II subunit RPB1
            OS=Caenorhabditis briggsae GN=ama-1 PE=3 SV=2
          Length = 1853

 Score =  115 bits (287), Expect = 2e-25
 Identities = 57/156 (36%), Positives = 96/156 (61%)
 Frame = -2

Query: 522  VIQFLYGEDGMDAVWIESQKADLIKMKKKEFDRTYRFEIDAENWNPDYMLPEHVEDLRTI 343
            ++Q  YGEDG+D +W+E+Q    +K     F+R +R ++    +       + V +++  
Sbjct: 880  MVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQEA 939

Query: 342  QEFRNVFDAEVQKLETDRRQLRTEIAPSGDNSWPLPVNLKRLIWNAQKIFKIDFKRPSDM 163
            Q+  ++ ++E  +LE DRR LR +I P GD    LP NL+RLIWNAQKIFK+D ++P ++
Sbjct: 940  QDGISLVESEWSQLEEDRRLLR-KIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNL 998

Query: 162  HPMEIVEAVDKLQERLKVVPGDDHLSVEAQRIAKCL 55
             P+ ++  V +L ++L +V G+D +S +AQ  A  L
Sbjct: 999  SPLHVINGVRELSKKLIIVSGNDEISKQAQYNATLL 1034



 Score = 39.3 bits (90), Expect = 0.011
 Identities = 17/22 (77%), Positives = 19/22 (86%)
 Frame = +2

Query: 11   ELRIVISFDASYVNYRHLAILC 76
            E+  VISFD SYVNYRHLA+LC
Sbjct: 1374 EMDNVISFDGSYVNYRHLALLC 1395


>sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II subunit RPB1
            OS=Caenorhabditis elegans GN=ama-1 PE=1 SV=2
          Length = 1852

 Score =  113 bits (283), Expect = 5e-25
 Identities = 56/156 (35%), Positives = 96/156 (61%)
 Frame = -2

Query: 522  VIQFLYGEDGMDAVWIESQKADLIKMKKKEFDRTYRFEIDAENWNPDYMLPEHVEDLRTI 343
            ++Q  YGEDG+D +W+E+Q    +K     F+R +R ++    +       + V +++  
Sbjct: 876  MVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQES 935

Query: 342  QEFRNVFDAEVQKLETDRRQLRTEIAPSGDNSWPLPVNLKRLIWNAQKIFKIDFKRPSDM 163
            ++  ++ ++E  +LE DRR LR +I P GD    LP NL+RLIWNAQKIFK+D ++P ++
Sbjct: 936  EDGISLVESEWSQLEEDRRLLR-KIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNL 994

Query: 162  HPMEIVEAVDKLQERLKVVPGDDHLSVEAQRIAKCL 55
             P+ ++  V +L ++L +V G+D +S +AQ  A  L
Sbjct: 995  SPLHVISGVRELSKKLIIVSGNDEISKQAQYNATLL 1030



 Score = 39.3 bits (90), Expect = 0.011
 Identities = 17/22 (77%), Positives = 19/22 (86%)
 Frame = +2

Query: 11   ELRIVISFDASYVNYRHLAILC 76
            E+  VISFD SYVNYRHLA+LC
Sbjct: 1369 EMDNVISFDGSYVNYRHLALLC 1390


>sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II subunit RPB1
            OS=Mus musculus GN=Polr2a PE=1 SV=3
          Length = 1970

 Score =  112 bits (280), Expect = 1e-24
 Identities = 61/156 (39%), Positives = 93/156 (59%)
 Frame = -2

Query: 522  VIQFLYGEDGMDAVWIESQKADLIKMKKKEFDRTYRFEIDAENWNPDYMLPEHVEDLRTI 343
            V+Q  YGEDG+    +E Q    +K   K F++ +RF+   E      +  + V+D+ + 
Sbjct: 886  VVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSN 945

Query: 342  QEFRNVFDAEVQKLETDRRQLRTEIAPSGDNSWPLPVNLKRLIWNAQKIFKIDFKRPSDM 163
               +N  + E +++  DR  LR  I P+GD+   LP NL R+IWNAQKIF I+ + PSD+
Sbjct: 946  AHIQNELEREFERMREDREVLRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDL 1004

Query: 162  HPMEIVEAVDKLQERLKVVPGDDHLSVEAQRIAKCL 55
            HP+++VE V +L ++L +V GDD LS +AQ  A  L
Sbjct: 1005 HPIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLL 1040



 Score = 40.0 bits (92), Expect = 0.007
 Identities = 18/22 (81%), Positives = 19/22 (86%)
 Frame = +2

Query: 11   ELRIVISFDASYVNYRHLAILC 76
            EL  VISFD SYVNYRHLA+LC
Sbjct: 1381 ELYHVISFDGSYVNYRHLALLC 1402


>sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II subunit RPB1
            OS=Homo sapiens GN=POLR2A PE=1 SV=1
          Length = 1970

 Score =  112 bits (280), Expect = 1e-24
 Identities = 61/156 (39%), Positives = 93/156 (59%)
 Frame = -2

Query: 522  VIQFLYGEDGMDAVWIESQKADLIKMKKKEFDRTYRFEIDAENWNPDYMLPEHVEDLRTI 343
            V+Q  YGEDG+    +E Q    +K   K F++ +RF+   E      +  + V+D+ + 
Sbjct: 886  VVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSN 945

Query: 342  QEFRNVFDAEVQKLETDRRQLRTEIAPSGDNSWPLPVNLKRLIWNAQKIFKIDFKRPSDM 163
               +N  + E +++  DR  LR  I P+GD+   LP NL R+IWNAQKIF I+ + PSD+
Sbjct: 946  AHIQNELEREFERMREDREVLRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDL 1004

Query: 162  HPMEIVEAVDKLQERLKVVPGDDHLSVEAQRIAKCL 55
            HP+++VE V +L ++L +V GDD LS +AQ  A  L
Sbjct: 1005 HPIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLL 1040



 Score = 40.0 bits (92), Expect = 0.007
 Identities = 18/22 (81%), Positives = 19/22 (86%)
 Frame = +2

Query: 11   ELRIVISFDASYVNYRHLAILC 76
            EL  VISFD SYVNYRHLA+LC
Sbjct: 1381 ELYHVISFDGSYVNYRHLALLC 1402


>sp|Q75A34|RPB1_ASHGO DNA-directed RNA polymerase II subunit RPB1
            OS=Ashbya gossypii GN=RPB1 PE=3 SV=1
          Length = 1745

 Score =  112 bits (279), Expect = 1e-24
 Identities = 62/153 (40%), Positives = 93/153 (60%)
 Frame = -2

Query: 522  VIQFLYGEDGMDAVWIESQKADLIKMKKKEFDRTYRFEIDAENWNPDYMLPEHVEDLRTI 343
            +IQF+YGEDGMDA  IE Q  D I      F++ YR ++   N+  D  L E   ++   
Sbjct: 863  IIQFVYGEDGMDAAHIEKQSIDTIPGSDLAFEKRYRIDLLNPNYALDPNLLESGTEIVGD 922

Query: 342  QEFRNVFDAEVQKLETDRRQLRTEIAPSGDNSWPLPVNLKRLIWNAQKIFKIDFKRPSDM 163
             + +N+ D E ++L  DR  LR +I   G+++WPLPVN++R+I NAQ+ F+ID  +P+D+
Sbjct: 923  LKLQNLLDEEYKQLVQDRHFLR-KIFMDGEHNWPLPVNIRRIIQNAQQTFRIDSTKPTDL 981

Query: 162  HPMEIVEAVDKLQERLKVVPGDDHLSVEAQRIA 64
               ++V+ V  LQERL V+ G   +  EAQ  A
Sbjct: 982  SIQDVVQGVRGLQERLLVLRGKSQILQEAQENA 1014



 Score = 31.6 bits (70), Expect = 2.4
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = +2

Query: 2    LLSELRIVISFDASYVNYRHLAIL 73
            L  E+  VI+ D SYVNYRH+A+L
Sbjct: 1349 LYKEVYNVIASDGSYVNYRHMALL 1372


>sp|A5DCV3|RPB1_PICGU DNA-directed RNA polymerase II subunit RPB1
            (Fragments) OS=Pichia guilliermondii GN=RPB1 PE=3 SV=2
          Length = 1579

 Score =  109 bits (273), Expect = 7e-24
 Identities = 65/157 (41%), Positives = 94/157 (59%), Gaps = 1/157 (0%)
 Frame = -2

Query: 522  VIQFLYGEDGMDAVWIESQKADLIKMKKKEFDRTYRFEI-DAENWNPDYMLPEHVEDLRT 346
            +IQF+YGEDG+D   +ESQ  D+I    + F+R YR ++ D E    D +L E  +++R 
Sbjct: 695  IIQFVYGEDGVDGTQVESQSVDVIPGTDESFERRYRVDLLDPEKCIRDSLL-ESGKEVRG 753

Query: 345  IQEFRNVFDAEVQKLETDRRQLRTEIAPSGDNSWPLPVNLKRLIWNAQKIFKIDFKRPSD 166
                + V D E ++L  DRR LR     +GD +WPLPVNL+R+I NAQ++F     + SD
Sbjct: 754  DVNLQRVLDEEYEQLCNDRRYLREVCFTNGDYTWPLPVNLRRIIQNAQQLFHGGRHKASD 813

Query: 165  MHPMEIVEAVDKLQERLKVVPGDDHLSVEAQRIAKCL 55
            +   EIVE V +L ++L V+ GD  L  E+Q  A  L
Sbjct: 814  LRLEEIVEGVKELCKKLLVLRGDSPLVKESQENATLL 850



 Score = 35.4 bits (80), Expect = 0.17
 Identities = 15/24 (62%), Positives = 19/24 (79%)
 Frame = +2

Query: 2    LLSELRIVISFDASYVNYRHLAIL 73
            L  E+  VI+FD SYVNYRH+A+L
Sbjct: 1182 LFKEILNVIAFDGSYVNYRHMALL 1205


>sp|P04050|RPB1_YEAST DNA-directed RNA polymerase II subunit RPB1
            OS=Saccharomyces cerevisiae GN=RPB1 PE=1 SV=2
          Length = 1733

 Score =  105 bits (263), Expect = 1e-22
 Identities = 63/156 (40%), Positives = 90/156 (57%)
 Frame = -2

Query: 522  VIQFLYGEDGMDAVWIESQKADLIKMKKKEFDRTYRFEIDAENWNPDYMLPEHVEDLRTI 343
            VIQF+YGEDGMDA  IE Q  D I      F++ YR ++   +   D  L E   ++   
Sbjct: 863  VIQFIYGEDGMDAAHIEKQSLDTIGGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGD 922

Query: 342  QEFRNVFDAEVQKLETDRRQLRTEIAPSGDNSWPLPVNLKRLIWNAQKIFKIDFKRPSDM 163
             + + + D E ++L  DR+ LR E+   G+ +WPLPVN++R+I NAQ+ F ID  +PSD+
Sbjct: 923  LKLQVLLDEEYKQLVKDRKFLR-EVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSDL 981

Query: 162  HPMEIVEAVDKLQERLKVVPGDDHLSVEAQRIAKCL 55
               +IV  V  LQE L V+ G + +   AQR A  L
Sbjct: 982  TIKDIVLGVKDLQENLLVLRGKNEIIQNAQRDAVTL 1017



 Score = 31.6 bits (70), Expect = 2.4
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = +2

Query: 2    LLSELRIVISFDASYVNYRHLAIL 73
            L  E+  VI+ D SYVNYRH+A+L
Sbjct: 1348 LYKEVYNVIASDGSYVNYRHMALL 1371


>sp|P36594|RPB1_SCHPO DNA-directed RNA polymerase II subunit rpb1
            OS=Schizosaccharomyces pombe GN=rpb1 PE=1 SV=1
          Length = 1752

 Score =  105 bits (263), Expect = 1e-22
 Identities = 54/156 (34%), Positives = 94/156 (60%)
 Frame = -2

Query: 522  VIQFLYGEDGMDAVWIESQKADLIKMKKKEFDRTYRFEIDAENWNPDYMLPEHVEDLRTI 343
            +IQF YGEDG+DA  +E Q  D +++  K+F++ YR ++  E+ +    +   +E+  ++
Sbjct: 869  IIQFAYGEDGLDATLVEYQVFDSLRLSTKQFEKKYRIDL-MEDRSLSLYMENSIENDSSV 927

Query: 342  QEFRNVFDAEVQKLETDRRQLRTEIAPSGDNSWPLPVNLKRLIWNAQKIFKIDFKRPSDM 163
            Q+   + D E  +L  DR  L   I P GD  WPLPVN++R+I NA +IF ++ K+P+D+
Sbjct: 928  QD---LLDEEYTQLVADRELLCKFIFPKGDARWPLPVNVQRIIQNALQIFHLEAKKPTDL 984

Query: 162  HPMEIVEAVDKLQERLKVVPGDDHLSVEAQRIAKCL 55
             P +I+  +++L  +L +  G D ++ + Q  A  L
Sbjct: 985  LPSDIINGLNELIAKLTIFRGSDRITRDVQNNATLL 1020



 Score = 44.3 bits (103), Expect = 4e-04
 Identities = 20/25 (80%), Positives = 21/25 (84%)
 Frame = +2

Query: 2    LLSELRIVISFDASYVNYRHLAILC 76
            LL ELR VI FD SYVNYRHLA+LC
Sbjct: 1354 LLKELRNVIEFDGSYVNYRHLALLC 1378
tr_hit_id Q71ET3
Definition tr|Q71ET3|Q71ET3_PSINU DNA-directed RNA polymerase (Fragment) OS=Psilotum nudum
Align length 153
Score (bit) 276.0
E-value 6.0e-73
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920062|Adiantum capillus-veneris mRNA, clone:
YMU001_000132_F01.
         (523 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q71ET3|Q71ET3_PSINU DNA-directed RNA polymerase (Fragment) OS...   276   6e-73
tr|Q71EU1|Q71EU1_9SPER DNA-directed RNA polymerase (Fragment) OS...   269   7e-71
tr|Q71EU0|Q71EU0_CYCRE DNA-directed RNA polymerase (Fragment) OS...   268   1e-70
tr|Q71ET9|Q71ET9_9CONI DNA-directed RNA polymerase (Fragment) OS...   267   2e-70
tr|Q2TUN6|Q2TUN6_GINBI DNA-directed RNA polymerase (Fragment) OS...   267   3e-70
tr|Q1ACU7|Q1ACU7_9MAGN RNA polymerase II largest subunit (Fragme...   266   4e-70
tr|Q1ACU2|Q1ACU2_9MAGN RNA polymerase II largest subunit (Fragme...   266   5e-70
tr|Q1ACU6|Q1ACU6_9MAGN RNA polymerase II largest subunit (Fragme...   266   6e-70
tr|Q2TUN9|Q2TUN9_THUOC DNA-directed RNA polymerase (Fragment) OS...   264   2e-69
tr|Q1ACT3|Q1ACT3_NELNU RNA polymerase II largest subunit (Fragme...   264   2e-69
tr|B7SNW9|B7SNW9_ILLPA RNA polymerase II largest subunit (Fragme...   264   2e-69
tr|Q71ET6|Q71ET6_MAGSO DNA-directed RNA polymerase (Fragment) OS...   263   3e-69
tr|Q1ACV2|Q1ACV2_9MAGN RNA polymerase II largest subunit (Fragme...   263   3e-69
tr|Q1ACU1|Q1ACU1_9MAGN RNA polymerase II largest subunit (Fragme...   263   3e-69
tr|Q1ACS4|Q1ACS4_9MAGN RNA polymerase II largest subunit (Fragme...   263   3e-69
tr|B7SNX3|B7SNX3_PERAE RNA polymerase II largest subunit (Fragme...   263   3e-69
tr|B7SNX0|B7SNX0_LIRTU RNA polymerase II largest subunit (Fragme...   263   3e-69
tr|B7SNW7|B7SNW7_CERDE RNA polymerase II largest subunit (Fragme...   263   3e-69
tr|B7SNW6|B7SNW6_BETVU RNA polymerase II largest subunit (Fragme...   263   3e-69
tr|A7NVN7|A7NVN7_VITVI DNA-directed RNA polymerase OS=Vitis vini...   263   3e-69
tr|Q1ACT6|Q1ACT6_MACIN RNA polymerase II largest subunit (Fragme...   263   4e-69
tr|Q1ACV1|Q1ACV1_9MAGN RNA polymerase II largest subunit (Fragme...   263   5e-69
tr|Q1ACU4|Q1ACU4_GUNCH RNA polymerase II largest subunit (Fragme...   263   5e-69
tr|Q1ACU3|Q1ACU3_9MAGN RNA polymerase II largest subunit (Fragme...   262   9e-69
tr|Q1ACS5|Q1ACS5_9MAGN RNA polymerase II largest subunit (Fragme...   262   9e-69
tr|Q2TUN8|Q2TUN8_TAXCA DNA-directed RNA polymerase (Fragment) OS...   261   1e-68
tr|Q2TUN7|Q2TUN7_9CONI DNA-directed RNA polymerase (Fragment) OS...   261   1e-68
tr|Q1ACS9|Q1ACS9_9CARY RNA polymerase II largest subunit (Fragme...   261   1e-68
tr|Q1ACS6|Q1ACS6_9ASTR RNA polymerase II largest subunit (Fragme...   260   3e-68
tr|Q71ET4|Q71ET4_AMBTC DNA-directed RNA polymerase (Fragment) OS...   260   3e-68

>tr|Q71ET3|Q71ET3_PSINU DNA-directed RNA polymerase (Fragment)
            OS=Psilotum nudum GN=RPB1 PE=2 SV=1
          Length = 1013

 Score =  276 bits (705), Expect = 6e-73
 Identities = 132/153 (86%), Positives = 142/153 (92%)
 Frame = -2

Query: 522  VIQFLYGEDGMDAVWIESQKADLIKMKKKEFDRTYRFEIDAENWNPDYMLPEHVEDLRTI 343
            VI+FLYGEDGMDAVWIESQK D +KMK KEFDR Y FEID+ENWNPDYML EHVEDL+TI
Sbjct: 803  VIEFLYGEDGMDAVWIESQKLDSMKMKTKEFDRMYMFEIDSENWNPDYMLAEHVEDLKTI 862

Query: 342  QEFRNVFDAEVQKLETDRRQLRTEIAPSGDNSWPLPVNLKRLIWNAQKIFKIDFKRPSDM 163
            QEFRNVFDAEVQKLE DRRQL TEIAPSGDNSWPLPVNLKRLIWNAQKIFK+DF++PSDM
Sbjct: 863  QEFRNVFDAEVQKLEADRRQLCTEIAPSGDNSWPLPVNLKRLIWNAQKIFKVDFRKPSDM 922

Query: 162  HPMEIVEAVDKLQERLKVVPGDDHLSVEAQRIA 64
            HPMEIVEAVDKLQERLKVVPG+D +S EAQ+ A
Sbjct: 923  HPMEIVEAVDKLQERLKVVPGEDEISKEAQKNA 955


>tr|Q71EU1|Q71EU1_9SPER DNA-directed RNA polymerase (Fragment)
            OS=Zamia muricata GN=RPB1 PE=2 SV=1
          Length = 1013

 Score =  269 bits (687), Expect = 7e-71
 Identities = 127/153 (83%), Positives = 140/153 (91%)
 Frame = -2

Query: 522  VIQFLYGEDGMDAVWIESQKADLIKMKKKEFDRTYRFEIDAENWNPDYMLPEHVEDLRTI 343
            VIQFLYGEDGMDAVWIESQK D +KMK+ EF+  YR+EID ENWNP YMLPEHVEDL+TI
Sbjct: 803  VIQFLYGEDGMDAVWIESQKLDSLKMKRPEFENVYRYEIDNENWNPSYMLPEHVEDLKTI 862

Query: 342  QEFRNVFDAEVQKLETDRRQLRTEIAPSGDNSWPLPVNLKRLIWNAQKIFKIDFKRPSDM 163
            +EF+NVFDAEVQKLE DRRQL TEIAPSGDNSWP+PVNLKRLIWNAQK FKID ++PSDM
Sbjct: 863  REFQNVFDAEVQKLEADRRQLGTEIAPSGDNSWPMPVNLKRLIWNAQKTFKIDLRKPSDM 922

Query: 162  HPMEIVEAVDKLQERLKVVPGDDHLSVEAQRIA 64
            HPMEIVEAVDKLQERLKVVPGDD +S+EAQ+ A
Sbjct: 923  HPMEIVEAVDKLQERLKVVPGDDLMSIEAQKNA 955


>tr|Q71EU0|Q71EU0_CYCRE DNA-directed RNA polymerase (Fragment)
            OS=Cycas revoluta GN=RPB1 PE=2 SV=1
          Length = 1013

 Score =  268 bits (685), Expect = 1e-70
 Identities = 126/153 (82%), Positives = 140/153 (91%)
 Frame = -2

Query: 522  VIQFLYGEDGMDAVWIESQKADLIKMKKKEFDRTYRFEIDAENWNPDYMLPEHVEDLRTI 343
            VIQFLYGEDGMDAVWIESQK D +KMK+ EF+  YR+EID ENWNP YMLPEHVEDL+TI
Sbjct: 803  VIQFLYGEDGMDAVWIESQKLDSLKMKRSEFENVYRYEIDNENWNPSYMLPEHVEDLKTI 862

Query: 342  QEFRNVFDAEVQKLETDRRQLRTEIAPSGDNSWPLPVNLKRLIWNAQKIFKIDFKRPSDM 163
            +EF+NVFDA+VQKLE DRRQL TEIAPSGDNSWP+PVNLKRLIWNAQK FKID ++PSDM
Sbjct: 863  REFQNVFDAQVQKLEADRRQLGTEIAPSGDNSWPMPVNLKRLIWNAQKTFKIDLRKPSDM 922

Query: 162  HPMEIVEAVDKLQERLKVVPGDDHLSVEAQRIA 64
            HPMEIVEAVDKLQERLKVVPGDD +S+EAQ+ A
Sbjct: 923  HPMEIVEAVDKLQERLKVVPGDDLMSIEAQKNA 955


>tr|Q71ET9|Q71ET9_9CONI DNA-directed RNA polymerase (Fragment)
            OS=Pinus nigra GN=RPB1 PE=2 SV=1
          Length = 1013

 Score =  267 bits (683), Expect = 2e-70
 Identities = 125/153 (81%), Positives = 141/153 (92%)
 Frame = -2

Query: 522  VIQFLYGEDGMDAVWIESQKADLIKMKKKEFDRTYRFEIDAENWNPDYMLPEHVEDLRTI 343
            VIQFLYGEDGMDAVWIESQK D +KMKKKEF+  Y++E+D ENWNP YMLPEHVEDL+TI
Sbjct: 803  VIQFLYGEDGMDAVWIESQKLDSLKMKKKEFENVYKYELDQENWNPSYMLPEHVEDLKTI 862

Query: 342  QEFRNVFDAEVQKLETDRRQLRTEIAPSGDNSWPLPVNLKRLIWNAQKIFKIDFKRPSDM 163
            +EF+NVFDAEVQKLE+DRRQL  EIAPSGDNSWPLPVNLKRLIWN+QK FKID +RPSDM
Sbjct: 863  REFQNVFDAEVQKLESDRRQLGMEIAPSGDNSWPLPVNLKRLIWNSQKTFKIDARRPSDM 922

Query: 162  HPMEIVEAVDKLQERLKVVPGDDHLSVEAQRIA 64
            HPMEIVEA+D+LQERLKVVPGDD +S+EAQ+ A
Sbjct: 923  HPMEIVEAIDRLQERLKVVPGDDLMSIEAQKNA 955


>tr|Q2TUN6|Q2TUN6_GINBI DNA-directed RNA polymerase (Fragment)
            OS=Ginkgo biloba GN=rpb1 PE=2 SV=1
          Length = 1013

 Score =  267 bits (682), Expect = 3e-70
 Identities = 126/153 (82%), Positives = 140/153 (91%)
 Frame = -2

Query: 522  VIQFLYGEDGMDAVWIESQKADLIKMKKKEFDRTYRFEIDAENWNPDYMLPEHVEDLRTI 343
            VIQFLYGEDGMDAVWIESQK D +KMK+KEF+  Y++EID ENWNP YML +HVEDL+TI
Sbjct: 803  VIQFLYGEDGMDAVWIESQKLDSLKMKRKEFENVYKYEIDNENWNPGYMLADHVEDLKTI 862

Query: 342  QEFRNVFDAEVQKLETDRRQLRTEIAPSGDNSWPLPVNLKRLIWNAQKIFKIDFKRPSDM 163
            +EFRNVFDAEVQKLE DRRQL TEIAPSGDNSWP+PVNLKRLIWNAQK FKID ++PSDM
Sbjct: 863  REFRNVFDAEVQKLEADRRQLGTEIAPSGDNSWPMPVNLKRLIWNAQKTFKIDLRKPSDM 922

Query: 162  HPMEIVEAVDKLQERLKVVPGDDHLSVEAQRIA 64
            HPMEIVEAVDKLQERLKVVPGDD +S+EAQ+ A
Sbjct: 923  HPMEIVEAVDKLQERLKVVPGDDLMSIEAQKNA 955


>tr|Q1ACU7|Q1ACU7_9MAGN RNA polymerase II largest subunit (Fragment)
           OS=Cissus tuberosa GN=RPB1 PE=4 SV=1
          Length = 240

 Score =  266 bits (681), Expect = 4e-70
 Identities = 127/153 (83%), Positives = 139/153 (90%)
 Frame = -2

Query: 522 VIQFLYGEDGMDAVWIESQKADLIKMKKKEFDRTYRFEIDAENWNPDYMLPEHVEDLRTI 343
           VIQFLYGEDGMDAVWIESQK D +KMKK EFDR +++EID ENWNP YMLPEHVEDL+TI
Sbjct: 33  VIQFLYGEDGMDAVWIESQKLDSLKMKKAEFDRVFKYEIDDENWNPSYMLPEHVEDLKTI 92

Query: 342 QEFRNVFDAEVQKLETDRRQLRTEIAPSGDNSWPLPVNLKRLIWNAQKIFKIDFKRPSDM 163
           +EFRNVFDAEVQKLE DR QL TEIA +GDNSWP+PVNLKRLIWNAQK FK+D +RPSDM
Sbjct: 93  REFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDM 152

Query: 162 HPMEIVEAVDKLQERLKVVPGDDHLSVEAQRIA 64
           HPMEIVEAVDKLQERLKVVPGDD +SVEAQ+ A
Sbjct: 153 HPMEIVEAVDKLQERLKVVPGDDLISVEAQKNA 185


>tr|Q1ACU2|Q1ACU2_9MAGN RNA polymerase II largest subunit (Fragment)
           OS=Hibbertia aspera GN=RPB1 PE=4 SV=1
          Length = 240

 Score =  266 bits (680), Expect = 5e-70
 Identities = 126/153 (82%), Positives = 139/153 (90%)
 Frame = -2

Query: 522 VIQFLYGEDGMDAVWIESQKADLIKMKKKEFDRTYRFEIDAENWNPDYMLPEHVEDLRTI 343
           VIQFLYGEDGMD+VWIESQK D +KMKK EFDR +++EID ENWNP YMLPEHVEDL+TI
Sbjct: 33  VIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDRVFKYEIDDENWNPSYMLPEHVEDLKTI 92

Query: 342 QEFRNVFDAEVQKLETDRRQLRTEIAPSGDNSWPLPVNLKRLIWNAQKIFKIDFKRPSDM 163
           +EFRNVFDAEVQKLE DR QL TEIA +GDNSWP+PVNLKRLIWNAQK FK+D +RPSDM
Sbjct: 93  REFRNVFDAEVQKLEADRFQLATEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDM 152

Query: 162 HPMEIVEAVDKLQERLKVVPGDDHLSVEAQRIA 64
           HPMEIVEAVDKLQERLKVVPGDD LS+EAQ+ A
Sbjct: 153 HPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNA 185


>tr|Q1ACU6|Q1ACU6_9MAGN RNA polymerase II largest subunit (Fragment)
           OS=Dillenia suffruticosa GN=RPB1 PE=4 SV=1
          Length = 240

 Score =  266 bits (679), Expect = 6e-70
 Identities = 126/153 (82%), Positives = 138/153 (90%)
 Frame = -2

Query: 522 VIQFLYGEDGMDAVWIESQKADLIKMKKKEFDRTYRFEIDAENWNPDYMLPEHVEDLRTI 343
           VIQFLYGEDGMD+VWIESQK D +KMKK EFDR +++EID ENWNP YMLPEHVEDL+TI
Sbjct: 33  VIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDRVFKYEIDDENWNPSYMLPEHVEDLKTI 92

Query: 342 QEFRNVFDAEVQKLETDRRQLRTEIAPSGDNSWPLPVNLKRLIWNAQKIFKIDFKRPSDM 163
           +EFRNVFDAEVQKLE DR QL TEIA +GDNSWP+PVNLKRLIWNAQK FK+D +RPSDM
Sbjct: 93  REFRNVFDAEVQKLEADRCQLATEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDM 152

Query: 162 HPMEIVEAVDKLQERLKVVPGDDHLSVEAQRIA 64
           HPMEIVEAVDKLQERLKVVPGDD LS EAQ+ A
Sbjct: 153 HPMEIVEAVDKLQERLKVVPGDDFLSTEAQKNA 185


>tr|Q2TUN9|Q2TUN9_THUOC DNA-directed RNA polymerase (Fragment)
            OS=Thuja occidentalis GN=rpb1 PE=2 SV=1
          Length = 1013

 Score =  264 bits (675), Expect = 2e-69
 Identities = 124/153 (81%), Positives = 141/153 (92%)
 Frame = -2

Query: 522  VIQFLYGEDGMDAVWIESQKADLIKMKKKEFDRTYRFEIDAENWNPDYMLPEHVEDLRTI 343
            VIQFLYGEDGMDAVWIESQK D +KMK+KEF+  YR+EID ENWNP YMLPEHV+DL+TI
Sbjct: 803  VIQFLYGEDGMDAVWIESQKLDSLKMKRKEFENVYRYEIDQENWNPSYMLPEHVDDLKTI 862

Query: 342  QEFRNVFDAEVQKLETDRRQLRTEIAPSGDNSWPLPVNLKRLIWNAQKIFKIDFKRPSDM 163
            +EF+NVFDAE+QKLE+DRRQL TEIAPSGDNSWP+PVNLKRLIWNAQK FKID ++ SDM
Sbjct: 863  REFQNVFDAELQKLESDRRQLGTEIAPSGDNSWPMPVNLKRLIWNAQKTFKIDPRKRSDM 922

Query: 162  HPMEIVEAVDKLQERLKVVPGDDHLSVEAQRIA 64
            HPMEIVEA+DKLQERLKVVPGDD +S+EAQ+ A
Sbjct: 923  HPMEIVEAIDKLQERLKVVPGDDLISIEAQKNA 955


>tr|Q1ACT3|Q1ACT3_NELNU RNA polymerase II largest subunit (Fragment)
           OS=Nelumbo nucifera GN=RPB1 PE=4 SV=1
          Length = 240

 Score =  264 bits (674), Expect = 2e-69
 Identities = 124/153 (81%), Positives = 139/153 (90%)
 Frame = -2

Query: 522 VIQFLYGEDGMDAVWIESQKADLIKMKKKEFDRTYRFEIDAENWNPDYMLPEHVEDLRTI 343
           VIQFLYGEDGMDAVWIE+QK D +KM+K EFD+ +R+EID ENWNP YMLPEHVEDL+TI
Sbjct: 33  VIQFLYGEDGMDAVWIETQKLDSLKMRKSEFDKVFRYEIDDENWNPSYMLPEHVEDLKTI 92

Query: 342 QEFRNVFDAEVQKLETDRRQLRTEIAPSGDNSWPLPVNLKRLIWNAQKIFKIDFKRPSDM 163
           +EFRNVFDAEVQKLE DR QL TEIA +GDN+WP+PVNLKRLIWNAQK FK+D +RPSDM
Sbjct: 93  REFRNVFDAEVQKLEADRYQLGTEIATTGDNNWPMPVNLKRLIWNAQKTFKVDLRRPSDM 152

Query: 162 HPMEIVEAVDKLQERLKVVPGDDHLSVEAQRIA 64
           HPMEIVEAVDKLQERLKVVPGDD LS+EAQ+ A
Sbjct: 153 HPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNA 185