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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920063
Clone id YMU001_000132_F02
Library
Length 447
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000132_F02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AGTGCAATCACATAGTCATTTCAAGAGAGCTTCCGATGATAGAAGCACTCAGTCCGAAGT
GATTGTTAGAGACAAATGCACCATCGATGTCAGAATGGCCGATAATGAAGATGCTGAGGT
GATGAGTGGGAGAGTGGAAGCTGCTTATGATCAAGGTGATGACAAGACCGCAACAGGAAG
TGCATGTGAGGATAGTCAAGAAAGCAGCCATTTGAGAACCTCAAATATGGAGGAAGGTAC
CCGTGGATCCCTTCAAGTTGAACCTGTCCGAAGTGGGGCTTCTCTAAATTCTTTGTGGCA
GTCACAATTGCATGCCCAGCGGAGGCTTCCTGTGTTTCAAGACATCACATTACTAGGAAG
TGCAGCTGCTTAAACGCTGTTTTTAACAAATTATAAGGTCAGCCATTGATGTAACTTCTA
CGGTGTCTGCGTGCGGACTCATGAAAT
■■Homology search results ■■ -
sp_hit_id P32583
Definition sp|P32583|SRP40_YEAST Suppressor protein SRP40 OS=Saccharomyces cerevisiae
Align length 86
Score (bit) 31.2
E-value 2.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920063|Adiantum capillus-veneris mRNA, clone:
YMU001_000132_F02.
         (447 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P32583|SRP40_YEAST Suppressor protein SRP40 OS=Saccharomyces ...    31   2.1  
sp|O76041|NEBL_HUMAN Nebulette OS=Homo sapiens GN=NEBL PE=1 SV=1       31   2.7  
sp|Q28IG6|PP4R2_XENTR Serine/threonine-protein phosphatase 4 reg...    30   3.5  
sp|O35986|ZRAB2_RAT Zinc finger Ran-binding domain-containing pr...    30   4.6  
sp|Q9R020|ZRAB2_MOUSE Zinc finger Ran-binding domain-containing ...    30   4.6  
sp|Q5R3Z7|NELL2_PONAB Protein kinase C-binding protein NELL2 OS=...    30   4.6  
sp|Q99435|NELL2_HUMAN Protein kinase C-binding protein NELL2 OS=...    30   4.6  
sp|Q5R580|ZRAB2_PONAB Zinc finger Ran-binding domain-containing ...    30   6.0  
sp|O95218|ZRAB2_HUMAN Zinc finger Ran-binding domain-containing ...    30   6.0  
sp|Q62918|NELL2_RAT Protein kinase C-binding protein NELL2 OS=Ra...    30   6.0  
sp|Q61220|NELL2_MOUSE Protein kinase C-binding protein NELL2 OS=...    30   6.0  
sp|Q24368|ISWI_DROME Chromatin-remodeling complex ATPase chain I...    30   6.0  
sp|Q19QU3|ZRAB2_PIG Zinc finger Ran-binding domain-containing pr...    29   7.8  
sp|Q90827|NEL_CHICK Protein NEL OS=Gallus gallus GN=NEL PE=2 SV=1      29   7.8  
sp|Q5I2W8|NBN_DANRE Nibrin OS=Danio rerio GN=nbn PE=2 SV=2             29   7.8  
sp|Q8RH05|DNAK_FUSNN Chaperone protein dnaK OS=Fusobacterium nuc...    29   7.8  
sp|O88281|MEGF6_RAT Multiple epidermal growth factor-like domain...    29   8.0  

>sp|P32583|SRP40_YEAST Suppressor protein SRP40 OS=Saccharomyces
           cerevisiae GN=SRP40 PE=1 SV=2
          Length = 406

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
 Frame = +2

Query: 8   SHSHFKRASDDRSTQSEVIVRDKCTIDVRMADNEDA-EVMSGRVEAAYDQGDDKTATGSA 184
           S S    +SD+ S++SE    D+     R +DNEDA E    + E       + +++GS+
Sbjct: 105 SSSSSSSSSDESSSESES--EDETKKRARESDNEDAKETKKAKTEPESSSSSESSSSGSS 162

Query: 185 CEDSQESSHLRTSNMEEGTRGSLQVE 262
                ES     S+    +  S   E
Sbjct: 163 SSSESESGSESDSDSSSSSSSSSDSE 188


>sp|O76041|NEBL_HUMAN Nebulette OS=Homo sapiens GN=NEBL PE=1 SV=1
          Length = 1014

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +2

Query: 35   DDRSTQSEVIVRDKCTIDVRMADNEDAEVMSGRVEAAYDQGDD--KTATGSACEDSQESS 208
            DDRS  SE+     C  +V    +E A V+ G  + ++ QG       + S+    Q S 
Sbjct: 895  DDRSEISEIYPSFSCCSEVTRPSDEGAPVLPGAYQQSHSQGYGYMHQTSVSSMRSMQHSP 954

Query: 209  HLRT 220
            +LRT
Sbjct: 955  NLRT 958


>sp|Q28IG6|PP4R2_XENTR Serine/threonine-protein phosphatase 4
           regulatory subunit 2 OS=Xenopus tropicalis GN=ppp4r2
           PE=2 SV=1
          Length = 401

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 24/80 (30%), Positives = 32/80 (40%)
 Frame = +2

Query: 98  ADNEDAEVMSGRVEAAYDQGDDKTATGSACEDSQESSHLRTSNMEEGTRGSLQVEPVRSG 277
           AD E     S   EA  D G+  + T S  E+S E SH    + +  T  SL  E   S 
Sbjct: 294 ADEESLMTPSESTEA--DSGERDSETVSVTEESSEESHQMEESEQSETACSLNSEEQNSA 351

Query: 278 ASLNSLWQSQLHAQRRLPVF 337
           A+  S   +    +  L  F
Sbjct: 352 AAAASTVGTDTSEEEHLGTF 371


>sp|O35986|ZRAB2_RAT Zinc finger Ran-binding domain-containing
           protein 2 OS=Rattus norvegicus GN=Zranb2 PE=2 SV=2
          Length = 330

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 19/75 (25%), Positives = 35/75 (46%)
 Frame = +2

Query: 101 DNEDAEVMSGRVEAAYDQGDDKTATGSACEDSQESSHLRTSNMEEGTRGSLQVEPVRSGA 280
           D +DA++    ++A+ ++  +K  +         SSH R+S+       S      RS +
Sbjct: 174 DEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRS 233

Query: 281 SLNSLWQSQLHAQRR 325
           S +S  QS+ H+  R
Sbjct: 234 SSSS--QSRSHSGSR 246


>sp|Q9R020|ZRAB2_MOUSE Zinc finger Ran-binding domain-containing
           protein 2 OS=Mus musculus GN=Zranb2 PE=1 SV=2
          Length = 330

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 19/75 (25%), Positives = 35/75 (46%)
 Frame = +2

Query: 101 DNEDAEVMSGRVEAAYDQGDDKTATGSACEDSQESSHLRTSNMEEGTRGSLQVEPVRSGA 280
           D +DA++    ++A+ ++  +K  +         SSH R+S+       S      RS +
Sbjct: 174 DEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRS 233

Query: 281 SLNSLWQSQLHAQRR 325
           S +S  QS+ H+  R
Sbjct: 234 SSSS--QSRSHSGSR 246


>sp|Q5R3Z7|NELL2_PONAB Protein kinase C-binding protein NELL2
           OS=Pongo abelii GN=NELL2 PE=2 SV=2
          Length = 816

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -2

Query: 176 LLRSCHHLDHKQLPL---SHSSPQHLHYRPF*HR 84
           ++ S HHLDH+ L L    H +   LHYR   HR
Sbjct: 102 VILSIHHLDHRYLELESSGHRNEVRLHYRSGSHR 135


>sp|Q99435|NELL2_HUMAN Protein kinase C-binding protein NELL2
           OS=Homo sapiens GN=NELL2 PE=1 SV=1
          Length = 816

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -2

Query: 176 LLRSCHHLDHKQLPL---SHSSPQHLHYRPF*HR 84
           ++ S HHLDH+ L L    H +   LHYR   HR
Sbjct: 102 VILSIHHLDHRYLELESSGHRNEVRLHYRSGSHR 135


>sp|Q5R580|ZRAB2_PONAB Zinc finger Ran-binding domain-containing
           protein 2 OS=Pongo abelii GN=ZRANB2 PE=2 SV=1
          Length = 320

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 17/75 (22%), Positives = 35/75 (46%)
 Frame = +2

Query: 101 DNEDAEVMSGRVEAAYDQGDDKTATGSACEDSQESSHLRTSNMEEGTRGSLQVEPVRSGA 280
           D +DA++    ++A+ ++  +K  +         SSH R+S+       S      RS +
Sbjct: 174 DEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRS 233

Query: 281 SLNSLWQSQLHAQRR 325
           S +S  +S+  ++ R
Sbjct: 234 SSSSQSRSRSSSRER 248


>sp|O95218|ZRAB2_HUMAN Zinc finger Ran-binding domain-containing
           protein 2 OS=Homo sapiens GN=ZRANB2 PE=1 SV=2
          Length = 330

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 17/75 (22%), Positives = 35/75 (46%)
 Frame = +2

Query: 101 DNEDAEVMSGRVEAAYDQGDDKTATGSACEDSQESSHLRTSNMEEGTRGSLQVEPVRSGA 280
           D +DA++    ++A+ ++  +K  +         SSH R+S+       S      RS +
Sbjct: 174 DEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRS 233

Query: 281 SLNSLWQSQLHAQRR 325
           S +S  +S+  ++ R
Sbjct: 234 SSSSQSRSRSSSRER 248


>sp|Q62918|NELL2_RAT Protein kinase C-binding protein NELL2
           OS=Rattus norvegicus GN=Nell2 PE=2 SV=1
          Length = 816

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -2

Query: 176 LLRSCHHLDHKQLPL---SHSSPQHLHYRPF*HR 84
           ++ S HHLDH+ L L    H +   LHYR   HR
Sbjct: 102 VILSIHHLDHRYLELESSGHRNEIRLHYRSGTHR 135
tr_hit_id A4S4A9
Definition tr|A4S4A9|A4S4A9_OSTLU Predicted protein (Fragment) OS=Ostreococcus lucimarinus (strain CCE9901)
Align length 100
Score (bit) 37.0
E-value 0.48
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920063|Adiantum capillus-veneris mRNA, clone:
YMU001_000132_F02.
         (447 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4S4A9|A4S4A9_OSTLU Predicted protein (Fragment) OS=Ostreococ...    37   0.48 
tr|Q5B3L5|Q5B3L5_EMENI Putative uncharacterized protein OS=Emeri...    37   0.63 
tr|B6H4I0|B6H4I0_PENCH Pc13g09690 protein OS=Penicillium chrysog...    34   3.1  
tr|Q026G4|Q026G4_SOLUE Transcriptional regulator, XRE family OS=...    34   4.1  
tr|A2QPC5|A2QPC5_ASPNC Putative uncharacterized protein OS=Asper...    34   4.1  
tr|A6RCR1|A6RCR1_AJECN Putative uncharacterized protein OS=Ajell...    33   7.0  
tr|Q9NKP3|Q9NKP3_LEIMA Putative uncharacterized protein OS=Leish...    33   9.1  
tr|B6N0P9|B6N0P9_BRAFL Putative uncharacterized protein OS=Branc...    33   9.1  

>tr|A4S4A9|A4S4A9_OSTLU Predicted protein (Fragment) OS=Ostreococcus
            lucimarinus (strain CCE9901) GN=OSTLU_88532 PE=4 SV=1
          Length = 3608

 Score = 37.0 bits (84), Expect = 0.48
 Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
 Frame = +2

Query: 32   SDDRSTQSEVIVRDKCTIDVRMADNEDAEVMSGRVEAAYDQGDDKTATGSACEDSQESSH 211
            SDD + + E+ + +   I +   DNE    ++G V +  D  +DK A   A  + Q ++ 
Sbjct: 3295 SDDVTRELELTISN-LRIQLTAKDNE----LNGAVASLNDLENDKRAIEEAMSELQAAAD 3349

Query: 212  LRTSNMEEGTR--GSLQVEPVRSGASLNSLWQSQLHAQRR 325
            ++ + ++       SL VE  +  A+L++ W +  HA+ R
Sbjct: 3350 MQAARVQTSIEQISSLNVELAKRSAALDASWDNLSHAESR 3389


>tr|Q5B3L5|Q5B3L5_EMENI Putative uncharacterized protein
           OS=Emericella nidulans GN=AN4865.2 PE=4 SV=1
          Length = 524

 Score = 36.6 bits (83), Expect = 0.63
 Identities = 23/73 (31%), Positives = 36/73 (49%)
 Frame = +2

Query: 32  SDDRSTQSEVIVRDKCTIDVRMADNEDAEVMSGRVEAAYDQGDDKTATGSACEDSQESSH 211
           SDD S++ E + + K       +D+ED++  S     A  +GD KT+   +  DS  S  
Sbjct: 171 SDDESSEEEEVPKAKAKA-AESSDSEDSDSESEEEAPAKAKGDAKTSKEESDSDSDSSES 229

Query: 212 LRTSNMEEGTRGS 250
              S+ E G+ GS
Sbjct: 230 SSDSDEESGSSGS 242


>tr|B6H4I0|B6H4I0_PENCH Pc13g09690 protein OS=Penicillium
           chrysogenum Wisconsin 54-1255 GN=Pc13g09690 PE=4 SV=1
          Length = 792

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
 Frame = +2

Query: 20  FKRASDDRSTQSEVIVRDKCTIDVRMADNEDAEVMSGRVEAAYDQGDDKTATGSACEDSQ 199
           F  + D+  + +E ++ +  T   +   NED E  +   E+  D GDD    GS      
Sbjct: 644 FLGSDDESESDTESLLDEPSTGGKKRKRNEDTESGTDEEESGDDDGDDHDKQGSRLSQRI 703

Query: 200 ESSHLRTSNMEEGT----RGSLQVEP 265
           + S+ R + + E T     GS QV P
Sbjct: 704 KRSYERNTKLREITSAPASGSDQVSP 729


>tr|Q026G4|Q026G4_SOLUE Transcriptional regulator, XRE family
           OS=Solibacter usitatus (strain Ellin6076) GN=Acid_2115
           PE=4 SV=1
          Length = 225

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +2

Query: 32  SDDRSTQSEVIVRDKCTIDVRMADNEDAEVMSGRVEAAYDQG 157
           S D  +++E+   D  T D+R  D E +E   GRV +AYD G
Sbjct: 2   SSDEFSRAEIKYHDFSTADMRSRDTESSEETIGRVLSAYDIG 43


>tr|A2QPC5|A2QPC5_ASPNC Putative uncharacterized protein
            OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
            GN=An07g08970 PE=4 SV=1
          Length = 1340

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +2

Query: 5    QSHSHFKRASDDRSTQSEVIVRDKCTIDVRMADNEDAEVMSGRVEAAYDQGDDKTATGSA 184
            Q   H K   D+R TQS V  R++  I   M   E  ++ S  VE A D+ +  +A   A
Sbjct: 1069 QLEQHLKSTLDERGTQSSVNTRERSAIVQEM--TEPGQLKSSAVEDAGDRAEISSAVQEA 1126

Query: 185  C-EDSQESS 208
              ED  +SS
Sbjct: 1127 SQEDGLDSS 1135


>tr|A6RCR1|A6RCR1_AJECN Putative uncharacterized protein
           OS=Ajellomyces capsulata (strain NAm1 / WU24)
           GN=HCAG_07419 PE=3 SV=1
          Length = 498

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = +2

Query: 128 GRVEAAYDQGDDKTATGSACEDSQESSHLRTSNMEEGTRGSLQVEPVRSGASLNSLWQSQ 307
           G V AA   G   T+     EDS+  + + +S   EGT+G +  +P+  GA   S W+ Q
Sbjct: 145 GAVHAAVFGGFAATSLAQRIEDSKPRAIMTSSCGIEGTKGVVDYKPLVEGAIGKSAWKPQ 204


>tr|Q9NKP3|Q9NKP3_LEIMA Putative uncharacterized protein
           OS=Leishmania major GN=LMJ_0243 PE=4 SV=1
          Length = 1463

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +2

Query: 89  VRMADNEDAEVMSGRVEAAYDQGD-DKTATGSACEDSQESSHLRTSNMEEGTRGSLQVEP 265
           VR+ D ED E   G  EAA   G  D +ATG    ++ + + L   +  EG  G   VEP
Sbjct: 56  VRLGDVEDDEEDGGTNEAAVAVGSGDSSATGVDNVETADGTALGREDEIEGMHGKSFVEP 115

Query: 266 VRSG 277
             SG
Sbjct: 116 QLSG 119


>tr|B6N0P9|B6N0P9_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_89151 PE=4 SV=1
          Length = 748

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = +2

Query: 26  RASDDRSTQSEVIVRDK----CTIDVRMADNEDAEVMSGRVEAAYDQGDDKTATGSACED 193
           R  DD ST  +V++RD+     T+D    D +D   +S  V+      DD + T  A   
Sbjct: 150 RDQDDMSTTVDVLIRDRDDMSTTVDALKRDRDDMRQLSTTVDTLKRNQDDMSTTVDALRR 209

Query: 194 SQE 202
            Q+
Sbjct: 210 DQD 212