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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920065
Clone id YMU001_000132_F04
Library
Length 467
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000132_F04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GCAAGAGCAGCCGCAATAGAGAATTCCTGAAGTTTAACTGTCTTCCACTGTCCATGCTCA
TTGGCTCGCCCTTCTCCAATTCATTGAAATGCAAAGAAGGTGAAATACAGCGCTCACTGG
AAATGTGCAAATCCGGAAAGAACTGTTGCAAACACTTTCCATCCTCTCTACTCAGACTGT
CTCGCACACCACATAACCTGCTACCTTCTCTTGCTGTACTCTGAACATCAATTTCAAAAC
TTTCGAGCACAGATGAAGCACCCAAAGTGTCAAGGCCAATATCTAGCATCCGCTTCTTCT
TTGCGCTTTCTGTACTACAATGGGGTGATGAAAGCGGTGTAACATATACAGCATTCGAGC
CCGAGCAGTCCAAAGCAAGCCCCTGATTTGCGACATGAGACAAATCTTGTTGATTTTCAG
TAGTAGCCAGCTCTGGATTGCTCCGTTCCTCTTTTCTACATGCAAAA
■■Homology search results ■■ -
sp_hit_id Q91690
Definition sp|Q91690|GLI1_XENLA Zinc finger protein GLI1 (Fragment) OS=Xenopus laevis
Align length 102
Score (bit) 33.1
E-value 0.62
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920065|Adiantum capillus-veneris mRNA, clone:
YMU001_000132_F04.
         (467 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q91690|GLI1_XENLA Zinc finger protein GLI1 (Fragment) OS=Xeno...    33   0.62 
sp|P98109|LYAM3_SHEEP P-selectin OS=Ovis aries GN=SELP PE=2 SV=1       32   1.4  
sp|P42201|LYAM3_BOVIN P-selectin OS=Bos taurus GN=SELP PE=2 SV=1       32   1.4  
sp|Q9HUF4|GLNE_PSEAE Glutamate-ammonia-ligase adenylyltransferas...    32   1.8  
sp|P55487|Y4ID_RHISN Uncharacterized monooxygenase y4iD OS=Rhizo...    31   3.1  
sp|Q9FPS2|UBP25_ARATH Ubiquitin carboxyl-terminal hydrolase 25 O...    31   3.1  
sp|Q9BRP4|PAAF1_HUMAN Proteasomal ATPase-associated factor 1 OS=...    31   3.1  
sp|Q6B516|SPHKB_DICDI Sphingosine kinase B OS=Dictyostelium disc...    30   4.0  
sp|Q5ZK69|PAAF1_CHICK Proteasomal ATPase-associated factor 1 OS=...    30   4.0  
sp|Q148I1|PAAF1_BOVIN Proteasomal ATPase-associated factor 1 OS=...    30   4.0  
sp|Q01102|LYAM3_MOUSE P-selectin OS=Mus musculus GN=Selp PE=1 SV=1     30   4.0  
sp|P16109|LYAM3_HUMAN P-selectin OS=Homo sapiens GN=SELP PE=1 SV=3     30   5.2  
sp|Q7RZM8|UTP10_NEUCR U3 small nucleolar RNA-associated protein ...    29   8.9  
sp|P58976|LPXH_XANCP UDP-2,3-diacylglucosamine hydrolase OS=Xant...    29   8.9  
sp|Q4URK1|LPXH_XANC8 UDP-2,3-diacylglucosamine hydrolase OS=Xant...    29   8.9  
sp|Q9CKW6|ATP6_PASMU ATP synthase subunit a OS=Pasteurella multo...    29   8.9  

>sp|Q91690|GLI1_XENLA Zinc finger protein GLI1 (Fragment) OS=Xenopus
           laevis GN=gli1 PE=2 SV=2
          Length = 1360

 Score = 33.1 bits (74), Expect = 0.62
 Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
 Frame = -2

Query: 442 SNPELATTENQQDLSHVANQGLALDCSGSNAVYVTPLSS-PHCSTESAKKKRMLDIGLDT 266
           SNP +    ++    H++++G+++         + P SS  HC  +S   + +   GLDT
Sbjct: 156 SNPLMPYNSHE----HLSSRGMSM---------LQPRSSVKHCQLKS---EPLSITGLDT 199

Query: 265 LGASSVLESFEIDVQSTAREGSR-----LCGVRDSLSREDGK 155
           +G+  + +  E D+ S A  G++     L   RD L ++DGK
Sbjct: 200 IGSKRLEDGSEGDISSPASVGTQDPLLGLLDGRDDLEKDDGK 241


>sp|P98109|LYAM3_SHEEP P-selectin OS=Ovis aries GN=SELP PE=2 SV=1
          Length = 769

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 443 EQSRAGYY*KSTRFVSCRKSGACFGLLGLECCICYTAFITP 321
           ++ RA  Y  S + +SC K G C   +G   C CY  F  P
Sbjct: 152 KRKRALCYRASCQDMSCSKQGECIETIGNYTCSCYPGFYGP 192


>sp|P42201|LYAM3_BOVIN P-selectin OS=Bos taurus GN=SELP PE=2 SV=1
          Length = 646

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 443 EQSRAGYY*KSTRFVSCRKSGACFGLLGLECCICYTAFITP 321
           ++ RA  Y  S + +SC K G C   +G   C CY  F  P
Sbjct: 152 KRKRALCYRASCQDMSCSKQGECIETIGNYTCSCYPGFYGP 192


>sp|Q9HUF4|GLNE_PSEAE Glutamate-ammonia-ligase adenylyltransferase
           OS=Pseudomonas aeruginosa GN=glnE PE=3 SV=1
          Length = 982

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 24/89 (26%), Positives = 41/89 (46%)
 Frame = -2

Query: 427 ATTENQQDLSHVANQGLALDCSGSNAVYVTPLSSPHCSTESAKKKRMLDIGLDTLGASSV 248
           A  E  +DLS +A+  + L C   +        +P     S + +RM+ +G+  LGA  +
Sbjct: 131 ALAETCRDLSALADACIDLACEWLHRRQCEQFGTP-IGRRSGEPQRMVVLGMGKLGAVEL 189

Query: 247 LESFEIDVQSTAREGSRLCGVRDSLSRED 161
             S +ID+     EG    G + SL  ++
Sbjct: 190 NLSSDIDLIFGYPEGGETEGAKRSLDNQE 218


>sp|P55487|Y4ID_RHISN Uncharacterized monooxygenase y4iD
           OS=Rhizobium sp. (strain NGR234) GN=y4iD PE=3 SV=1
          Length = 662

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +2

Query: 332 KRCNIYSIRARAVQSKPLICDMRQILLIFSSSQLWIAPF 448
           KR  +    A A+Q  P I D    L IF  S+ W+APF
Sbjct: 303 KRVAVIGNGASAMQVVPAIADRVGALTIFQRSRQWVAPF 341


>sp|Q9FPS2|UBP25_ARATH Ubiquitin carboxyl-terminal hydrolase 25
           OS=Arabidopsis thaliana GN=UBP25 PE=2 SV=1
          Length = 661

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -2

Query: 319 CSTESAKKKRMLDIGLDTLGASSVLESFEIDVQSTAREGS 200
           C  ES K   ++DI L+ L +SSV ES +   QS   +G+
Sbjct: 169 CGAESNKADEIMDISLEILQSSSVKESLQKFFQSEILDGN 208


>sp|Q9BRP4|PAAF1_HUMAN Proteasomal ATPase-associated factor 1
           OS=Homo sapiens GN=PAAF1 PE=1 SV=2
          Length = 392

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
 Frame = +3

Query: 39  CLPLSMLIGSPFSNSL-------KCKEGEIQRSLEMCKSGKNCCKHFPSSLLRLS 182
           CL +S   G   S+S        +   GE++R LE      NCC+ FPS L+ LS
Sbjct: 97  CLDISSRGGLGVSSSTDGTMKIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLS 151


>sp|Q6B516|SPHKB_DICDI Sphingosine kinase B OS=Dictyostelium
           discoideum GN=sgkB PE=2 SV=1
          Length = 760

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 29/132 (21%), Positives = 52/132 (39%), Gaps = 7/132 (5%)
 Frame = -2

Query: 454 KEERSNPELATTENQQDLSHVANQGLALDCSGSNAVY-VTPLSSPHCSTESAKKKRMLDI 278
           K E  N   +TT N  + ++      +   S S +   +T  ++   ST S       DI
Sbjct: 543 KNEEQNEINSTTSNNNNNNNTTTTSTSSSTSTSTSTSSLTATTTTAKSTNSLSSSPRSDI 602

Query: 277 GLDTLGASSVLESFEIDVQSTAREGSRLCGVRDSLSREDGKCLQQFFPDL------HISS 116
            + +   S  L+   I         + L    DSL  +  KC++  F  +      H++S
Sbjct: 603 NMSSNSISKSLDIGTIPSCKVTHNSNLLNESSDSLLSKGWKCIEGEFIGVVASTVSHLAS 662

Query: 115 ERCISPSLHFNE 80
           +   SP+ H ++
Sbjct: 663 DFISSPNAHLSD 674


>sp|Q5ZK69|PAAF1_CHICK Proteasomal ATPase-associated factor 1
           OS=Gallus gallus GN=PAAF1 PE=2 SV=1
          Length = 392

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = +3

Query: 99  GEIQRSLEMCKSGKNCCKHFPSSLLRLS 182
           GEI+R LE      NCC+ FPS L+ LS
Sbjct: 124 GEIRRLLEGHVYDVNCCRFFPSGLVVLS 151


>sp|Q148I1|PAAF1_BOVIN Proteasomal ATPase-associated factor 1 OS=Bos
           taurus GN=PAAF1 PE=2 SV=1
          Length = 392

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
 Frame = +3

Query: 39  CLPLS----MLIGSPFSNSLK---CKEGEIQRSLEMCKSGKNCCKHFPSSLLRLS 182
           CL +S    + + S    S+K      GE++R LE      NCC+ FPS L+ LS
Sbjct: 97  CLDISSGGGLGVSSSADGSMKIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLS 151
tr_hit_id Q3KPR7
Definition tr|Q3KPR7|Q3KPR7_XENLA LOC733381 protein (Fragment) OS=Xenopus laevis
Align length 54
Score (bit) 33.9
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920065|Adiantum capillus-veneris mRNA, clone:
YMU001_000132_F04.
         (467 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q3KPR7|Q3KPR7_XENLA LOC733381 protein (Fragment) OS=Xenopus l...    34   4.2  
tr|Q1LXN6|Q1LXN6_DANRE Novel protein similar to vertebrate GTP b...    34   4.2  
tr|B6WZM3|B6WZM3_9ENTR Putative uncharacterized protein OS=Provi...    34   4.2  
tr|A3W9H2|A3W9H2_9SPHN Probably methylase/helicase OS=Erythrobac...    34   4.2  
tr|B6XAJ2|B6XAJ2_9ENTR Putative uncharacterized protein OS=Provi...    33   7.2  
tr|Q9U110|Q9U110_LEIMA Putative uncharacterized protein L4830.13...    33   7.2  
tr|B4XYB8|B4XYB8_9ACTO Azi26 OS=Streptomyces sahachiroi GN=azi26...    33   9.4  

>tr|Q3KPR7|Q3KPR7_XENLA LOC733381 protein (Fragment) OS=Xenopus
           laevis GN=LOC733381 PE=2 SV=1
          Length = 289

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = +1

Query: 163 PLYSDCLAHHITCYLLLLYSEHQFQNFRAQMKHPKCQGQYLASASSLRFLYYNG 324
           PL+  CL  HI C  LLL +  Q          P C      S   ++FL +NG
Sbjct: 66  PLHEACLHGHIQCVKLLLAAGAQVDARNIDGSTPLCDASAAGSLECVKFLLHNG 119


>tr|Q1LXN6|Q1LXN6_DANRE Novel protein similar to vertebrate GTP
           binding protein 2 (GTPBP2) OS=Danio rerio
           GN=si:ch211-151i8.2 PE=4 SV=1
          Length = 605

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +1

Query: 253 MKHPKCQGQYLASASSLRFLYYNGVMKAV*HIQHSSPSSPKQAPDLRHETN 405
           +KHP    +YL   + L  L+  GV K + H+ H  PS+    PD  H  N
Sbjct: 559 LKHP----EYLRVGAKL--LFREGVTKGIGHVTHLLPSTQNHVPDQNHNQN 603


>tr|B6WZM3|B6WZM3_9ENTR Putative uncharacterized protein
           OS=Providencia rustigianii DSM 4541 GN=PROVRUST_00378
           PE=4 SV=1
          Length = 569

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 252 DEAPKVSRPISSIRFFFALSVLQWGDESGVTYTAFEPEQS 371
           D   K  RP S++ F +      W D SG+ YT FEP++S
Sbjct: 505 DLKDKADRPYSTMDFIYT-----WSDLSGLNYTGFEPQKS 539


>tr|A3W9H2|A3W9H2_9SPHN Probably methylase/helicase OS=Erythrobacter
            sp. NAP1 GN=NAP1_03035 PE=4 SV=1
          Length = 1411

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 19/63 (30%), Positives = 33/63 (52%)
 Frame = -2

Query: 439  NPELATTENQQDLSHVANQGLALDCSGSNAVYVTPLSSPHCSTESAKKKRMLDIGLDTLG 260
            NP+   ++N   +    N+ LAL  +  NA++   L       E+A++   LD+GL+T+ 
Sbjct: 1081 NPDGGLSDNLPTIQRWLNRILALPIALQNAIFEEYLGLVEARIEAAREAGTLDLGLETVR 1140

Query: 259  ASS 251
            A S
Sbjct: 1141 ADS 1143


>tr|B6XAJ2|B6XAJ2_9ENTR Putative uncharacterized protein
           OS=Providencia alcalifaciens DSM 30120
           GN=PROVALCAL_00340 PE=4 SV=1
          Length = 569

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 252 DEAPKVSRPISSIRFFFALSVLQWGDESGVTYTAFEPEQS 371
           D   K +RP S++ F +      W D +G+ YT FEP++S
Sbjct: 505 DLKDKTTRPYSTMDFIYT-----WSDLAGLNYTGFEPQKS 539


>tr|Q9U110|Q9U110_LEIMA Putative uncharacterized protein L4830.13
           OS=Leishmania major GN=L4830.13 PE=4 SV=2
          Length = 794

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -2

Query: 373 LDCSGSNAVYVTPLSSPHCSTESAKKKRMLDI-GLDTLG 260
           L  S S AV VTPL++PH S+ +   KR++ + GL+  G
Sbjct: 670 LQASNSAAVAVTPLAAPHTSSFNGSAKRVIPVLGLEVTG 708


>tr|B4XYB8|B4XYB8_9ACTO Azi26 OS=Streptomyces sahachiroi GN=azi26 PE=4
            SV=1
          Length = 1779

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = -2

Query: 280  IGLDTLGASSVLESFEIDVQSTAREGSRLCGVRDSLSR 167
            +G++T+ AS VL SF   + +   EG R CG+RD + R
Sbjct: 938  VGVETVPASVVLNSF---ITAATNEGERACGLRDIVFR 972