BP920065
Clone id YMU001_000132_F04
Library
Length 467
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000132_F04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
GCAAGAGCAGCCGCAATAGAGAATTCCTGAAGTTTAACTGTCTTCCACTGTCCATGCTCA
TTGGCTCGCCCTTCTCCAATTCATTGAAATGCAAAGAAGGTGAAATACAGCGCTCACTGG
AAATGTGCAAATCCGGAAAGAACTGTTGCAAACACTTTCCATCCTCTCTACTCAGACTGT
CTCGCACACCACATAACCTGCTACCTTCTCTTGCTGTACTCTGAACATCAATTTCAAAAC
TTTCGAGCACAGATGAAGCACCCAAAGTGTCAAGGCCAATATCTAGCATCCGCTTCTTCT
TTGCGCTTTCTGTACTACAATGGGGTGATGAAAGCGGTGTAACATATACAGCATTCGAGC
CCGAGCAGTCCAAAGCAAGCCCCTGATTTGCGACATGAGACAAATCTTGTTGATTTTCAG
TAGTAGCCAGCTCTGGATTGCTCCGTTCCTCTTTTCTACATGCAAAA
■■Homology search results ■■ -
sp_hit_id Q91690
Definition sp|Q91690|GLI1_XENLA Zinc finger protein GLI1 (Fragment) OS=Xenopus laevis
Align length 102
Score (bit) 33.1
E-value 0.62
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920065|Adiantum capillus-veneris mRNA, clone:
YMU001_000132_F04.
(467 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q91690|GLI1_XENLA Zinc finger protein GLI1 (Fragment) OS=Xeno... 33 0.62
sp|P98109|LYAM3_SHEEP P-selectin OS=Ovis aries GN=SELP PE=2 SV=1 32 1.4
sp|P42201|LYAM3_BOVIN P-selectin OS=Bos taurus GN=SELP PE=2 SV=1 32 1.4
sp|Q9HUF4|GLNE_PSEAE Glutamate-ammonia-ligase adenylyltransferas... 32 1.8
sp|P55487|Y4ID_RHISN Uncharacterized monooxygenase y4iD OS=Rhizo... 31 3.1
sp|Q9FPS2|UBP25_ARATH Ubiquitin carboxyl-terminal hydrolase 25 O... 31 3.1
sp|Q9BRP4|PAAF1_HUMAN Proteasomal ATPase-associated factor 1 OS=... 31 3.1
sp|Q6B516|SPHKB_DICDI Sphingosine kinase B OS=Dictyostelium disc... 30 4.0
sp|Q5ZK69|PAAF1_CHICK Proteasomal ATPase-associated factor 1 OS=... 30 4.0
sp|Q148I1|PAAF1_BOVIN Proteasomal ATPase-associated factor 1 OS=... 30 4.0
sp|Q01102|LYAM3_MOUSE P-selectin OS=Mus musculus GN=Selp PE=1 SV=1 30 4.0
sp|P16109|LYAM3_HUMAN P-selectin OS=Homo sapiens GN=SELP PE=1 SV=3 30 5.2
sp|Q7RZM8|UTP10_NEUCR U3 small nucleolar RNA-associated protein ... 29 8.9
sp|P58976|LPXH_XANCP UDP-2,3-diacylglucosamine hydrolase OS=Xant... 29 8.9
sp|Q4URK1|LPXH_XANC8 UDP-2,3-diacylglucosamine hydrolase OS=Xant... 29 8.9
sp|Q9CKW6|ATP6_PASMU ATP synthase subunit a OS=Pasteurella multo... 29 8.9

>sp|Q91690|GLI1_XENLA Zinc finger protein GLI1 (Fragment) OS=Xenopus
laevis GN=gli1 PE=2 SV=2
Length = 1360

Score = 33.1 bits (74), Expect = 0.62
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Frame = -2

Query: 442 SNPELATTENQQDLSHVANQGLALDCSGSNAVYVTPLSS-PHCSTESAKKKRMLDIGLDT 266
SNP + ++ H++++G+++ + P SS HC +S + + GLDT
Sbjct: 156 SNPLMPYNSHE----HLSSRGMSM---------LQPRSSVKHCQLKS---EPLSITGLDT 199

Query: 265 LGASSVLESFEIDVQSTAREGSR-----LCGVRDSLSREDGK 155
+G+ + + E D+ S A G++ L RD L ++DGK
Sbjct: 200 IGSKRLEDGSEGDISSPASVGTQDPLLGLLDGRDDLEKDDGK 241


>sp|P98109|LYAM3_SHEEP P-selectin OS=Ovis aries GN=SELP PE=2 SV=1
Length = 769

Score = 32.0 bits (71), Expect = 1.4
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -1

Query: 443 EQSRAGYY*KSTRFVSCRKSGACFGLLGLECCICYTAFITP 321
++ RA Y S + +SC K G C +G C CY F P
Sbjct: 152 KRKRALCYRASCQDMSCSKQGECIETIGNYTCSCYPGFYGP 192


>sp|P42201|LYAM3_BOVIN P-selectin OS=Bos taurus GN=SELP PE=2 SV=1
Length = 646

Score = 32.0 bits (71), Expect = 1.4
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -1

Query: 443 EQSRAGYY*KSTRFVSCRKSGACFGLLGLECCICYTAFITP 321
++ RA Y S + +SC K G C +G C CY F P
Sbjct: 152 KRKRALCYRASCQDMSCSKQGECIETIGNYTCSCYPGFYGP 192


>sp|Q9HUF4|GLNE_PSEAE Glutamate-ammonia-ligase adenylyltransferase
OS=Pseudomonas aeruginosa GN=glnE PE=3 SV=1
Length = 982

Score = 31.6 bits (70), Expect = 1.8
Identities = 24/89 (26%), Positives = 41/89 (46%)
Frame = -2

Query: 427 ATTENQQDLSHVANQGLALDCSGSNAVYVTPLSSPHCSTESAKKKRMLDIGLDTLGASSV 248
A E +DLS +A+ + L C + +P S + +RM+ +G+ LGA +
Sbjct: 131 ALAETCRDLSALADACIDLACEWLHRRQCEQFGTP-IGRRSGEPQRMVVLGMGKLGAVEL 189

Query: 247 LESFEIDVQSTAREGSRLCGVRDSLSRED 161
S +ID+ EG G + SL ++
Sbjct: 190 NLSSDIDLIFGYPEGGETEGAKRSLDNQE 218


>sp|P55487|Y4ID_RHISN Uncharacterized monooxygenase y4iD
OS=Rhizobium sp. (strain NGR234) GN=y4iD PE=3 SV=1
Length = 662

Score = 30.8 bits (68), Expect = 3.1
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +2

Query: 332 KRCNIYSIRARAVQSKPLICDMRQILLIFSSSQLWIAPF 448
KR + A A+Q P I D L IF S+ W+APF
Sbjct: 303 KRVAVIGNGASAMQVVPAIADRVGALTIFQRSRQWVAPF 341


>sp|Q9FPS2|UBP25_ARATH Ubiquitin carboxyl-terminal hydrolase 25
OS=Arabidopsis thaliana GN=UBP25 PE=2 SV=1
Length = 661

Score = 30.8 bits (68), Expect = 3.1
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -2

Query: 319 CSTESAKKKRMLDIGLDTLGASSVLESFEIDVQSTAREGS 200
C ES K ++DI L+ L +SSV ES + QS +G+
Sbjct: 169 CGAESNKADEIMDISLEILQSSSVKESLQKFFQSEILDGN 208


>sp|Q9BRP4|PAAF1_HUMAN Proteasomal ATPase-associated factor 1
OS=Homo sapiens GN=PAAF1 PE=1 SV=2
Length = 392

Score = 30.8 bits (68), Expect = 3.1
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Frame = +3

Query: 39 CLPLSMLIGSPFSNSL-------KCKEGEIQRSLEMCKSGKNCCKHFPSSLLRLS 182
CL +S G S+S + GE++R LE NCC+ FPS L+ LS
Sbjct: 97 CLDISSRGGLGVSSSTDGTMKIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLS 151


>sp|Q6B516|SPHKB_DICDI Sphingosine kinase B OS=Dictyostelium
discoideum GN=sgkB PE=2 SV=1
Length = 760

Score = 30.4 bits (67), Expect = 4.0
Identities = 29/132 (21%), Positives = 52/132 (39%), Gaps = 7/132 (5%)
Frame = -2

Query: 454 KEERSNPELATTENQQDLSHVANQGLALDCSGSNAVY-VTPLSSPHCSTESAKKKRMLDI 278
K E N +TT N + ++ + S S + +T ++ ST S DI
Sbjct: 543 KNEEQNEINSTTSNNNNNNNTTTTSTSSSTSTSTSTSSLTATTTTAKSTNSLSSSPRSDI 602

Query: 277 GLDTLGASSVLESFEIDVQSTAREGSRLCGVRDSLSREDGKCLQQFFPDL------HISS 116
+ + S L+ I + L DSL + KC++ F + H++S
Sbjct: 603 NMSSNSISKSLDIGTIPSCKVTHNSNLLNESSDSLLSKGWKCIEGEFIGVVASTVSHLAS 662

Query: 115 ERCISPSLHFNE 80
+ SP+ H ++
Sbjct: 663 DFISSPNAHLSD 674


>sp|Q5ZK69|PAAF1_CHICK Proteasomal ATPase-associated factor 1
OS=Gallus gallus GN=PAAF1 PE=2 SV=1
Length = 392

Score = 30.4 bits (67), Expect = 4.0
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +3

Query: 99 GEIQRSLEMCKSGKNCCKHFPSSLLRLS 182
GEI+R LE NCC+ FPS L+ LS
Sbjct: 124 GEIRRLLEGHVYDVNCCRFFPSGLVVLS 151


>sp|Q148I1|PAAF1_BOVIN Proteasomal ATPase-associated factor 1 OS=Bos
taurus GN=PAAF1 PE=2 SV=1
Length = 392

Score = 30.4 bits (67), Expect = 4.0
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Frame = +3

Query: 39 CLPLS----MLIGSPFSNSLK---CKEGEIQRSLEMCKSGKNCCKHFPSSLLRLS 182
CL +S + + S S+K GE++R LE NCC+ FPS L+ LS
Sbjct: 97 CLDISSGGGLGVSSSADGSMKIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLS 151


tr_hit_id Q3KPR7
Definition tr|Q3KPR7|Q3KPR7_XENLA LOC733381 protein (Fragment) OS=Xenopus laevis
Align length 54
Score (bit) 33.9
E-value 4.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920065|Adiantum capillus-veneris mRNA, clone:
YMU001_000132_F04.
(467 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q3KPR7|Q3KPR7_XENLA LOC733381 protein (Fragment) OS=Xenopus l... 34 4.2
tr|Q1LXN6|Q1LXN6_DANRE Novel protein similar to vertebrate GTP b... 34 4.2
tr|B6WZM3|B6WZM3_9ENTR Putative uncharacterized protein OS=Provi... 34 4.2
tr|A3W9H2|A3W9H2_9SPHN Probably methylase/helicase OS=Erythrobac... 34 4.2
tr|B6XAJ2|B6XAJ2_9ENTR Putative uncharacterized protein OS=Provi... 33 7.2
tr|Q9U110|Q9U110_LEIMA Putative uncharacterized protein L4830.13... 33 7.2
tr|B4XYB8|B4XYB8_9ACTO Azi26 OS=Streptomyces sahachiroi GN=azi26... 33 9.4

>tr|Q3KPR7|Q3KPR7_XENLA LOC733381 protein (Fragment) OS=Xenopus
laevis GN=LOC733381 PE=2 SV=1
Length = 289

Score = 33.9 bits (76), Expect = 4.2
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = +1

Query: 163 PLYSDCLAHHITCYLLLLYSEHQFQNFRAQMKHPKCQGQYLASASSLRFLYYNG 324
PL+ CL HI C LLL + Q P C S ++FL +NG
Sbjct: 66 PLHEACLHGHIQCVKLLLAAGAQVDARNIDGSTPLCDASAAGSLECVKFLLHNG 119


>tr|Q1LXN6|Q1LXN6_DANRE Novel protein similar to vertebrate GTP
binding protein 2 (GTPBP2) OS=Danio rerio
GN=si:ch211-151i8.2 PE=4 SV=1
Length = 605

Score = 33.9 bits (76), Expect = 4.2
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +1

Query: 253 MKHPKCQGQYLASASSLRFLYYNGVMKAV*HIQHSSPSSPKQAPDLRHETN 405
+KHP +YL + L L+ GV K + H+ H PS+ PD H N
Sbjct: 559 LKHP----EYLRVGAKL--LFREGVTKGIGHVTHLLPSTQNHVPDQNHNQN 603


>tr|B6WZM3|B6WZM3_9ENTR Putative uncharacterized protein
OS=Providencia rustigianii DSM 4541 GN=PROVRUST_00378
PE=4 SV=1
Length = 569

Score = 33.9 bits (76), Expect = 4.2
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3

Query: 252 DEAPKVSRPISSIRFFFALSVLQWGDESGVTYTAFEPEQS 371
D K RP S++ F + W D SG+ YT FEP++S
Sbjct: 505 DLKDKADRPYSTMDFIYT-----WSDLSGLNYTGFEPQKS 539


>tr|A3W9H2|A3W9H2_9SPHN Probably methylase/helicase OS=Erythrobacter
sp. NAP1 GN=NAP1_03035 PE=4 SV=1
Length = 1411

Score = 33.9 bits (76), Expect = 4.2
Identities = 19/63 (30%), Positives = 33/63 (52%)
Frame = -2

Query: 439 NPELATTENQQDLSHVANQGLALDCSGSNAVYVTPLSSPHCSTESAKKKRMLDIGLDTLG 260
NP+ ++N + N+ LAL + NA++ L E+A++ LD+GL+T+
Sbjct: 1081 NPDGGLSDNLPTIQRWLNRILALPIALQNAIFEEYLGLVEARIEAAREAGTLDLGLETVR 1140

Query: 259 ASS 251
A S
Sbjct: 1141 ADS 1143


>tr|B6XAJ2|B6XAJ2_9ENTR Putative uncharacterized protein
OS=Providencia alcalifaciens DSM 30120
GN=PROVALCAL_00340 PE=4 SV=1
Length = 569

Score = 33.1 bits (74), Expect = 7.2
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3

Query: 252 DEAPKVSRPISSIRFFFALSVLQWGDESGVTYTAFEPEQS 371
D K +RP S++ F + W D +G+ YT FEP++S
Sbjct: 505 DLKDKTTRPYSTMDFIYT-----WSDLAGLNYTGFEPQKS 539


>tr|Q9U110|Q9U110_LEIMA Putative uncharacterized protein L4830.13
OS=Leishmania major GN=L4830.13 PE=4 SV=2
Length = 794

Score = 33.1 bits (74), Expect = 7.2
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = -2

Query: 373 LDCSGSNAVYVTPLSSPHCSTESAKKKRMLDI-GLDTLG 260
L S S AV VTPL++PH S+ + KR++ + GL+ G
Sbjct: 670 LQASNSAAVAVTPLAAPHTSSFNGSAKRVIPVLGLEVTG 708


>tr|B4XYB8|B4XYB8_9ACTO Azi26 OS=Streptomyces sahachiroi GN=azi26 PE=4
SV=1
Length = 1779

Score = 32.7 bits (73), Expect = 9.4
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = -2

Query: 280 IGLDTLGASSVLESFEIDVQSTAREGSRLCGVRDSLSR 167
+G++T+ AS VL SF + + EG R CG+RD + R
Sbjct: 938 VGVETVPASVVLNSF---ITAATNEGERACGLRDIVFR 972