BP920067
Clone id YMU001_000132_F06
Library
Length 502
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000132_F06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
GATCCGAAGGGTCAGCCAAATCCGGAGCAGAAAATTTGATATTTCAGAGGATGTGTCTAT
AAACAGAACAACAATTCCACATCCGCCAACTGCACGGGTGGCTCTTCTGATTGGAAGGAA
GCAGTTCAACTGATCATCATTCCTCACCAGATGTCTAGCTTCATCAAACACAAATACATA
TTCCAGCTTCTGAGCATTCTTCATCAAACTGTTTGGCCAAAATCCCACAAATTCTGTATG
AGCTTCGGTTTCCCACGTGGCCCATGTAATCTGCTTGCTTTGCTGAATTTTAGTCAAACC
ATCTTCTCGACTGAGCACAGCTAGAAATTTCTCGGTCTGCTCTTGCACATCCTCCCAATA
ATTGTTGCCTTGTCTTGTCTCGATCAAAAACTTTTCACGATTCCAATCACTATTCTTCAC
TTTATTTTCCAGCACACACAAGCATGCACAGAAGTAAGCCAGAGTAAAATTCATGCAAGC
TAGTTGCCCTCGTAGGCTCTCA
■■Homology search results ■■ -
sp_hit_id Q9VBQ9
Definition sp|Q9VBQ9|MED28_DROME Mediator of RNA polymerase II transcription subunit 28 OS=Drosophila melanogaster
Align length 43
Score (bit) 30.0
E-value 6.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920067|Adiantum capillus-veneris mRNA, clone:
YMU001_000132_F06.
(502 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9VBQ9|MED28_DROME Mediator of RNA polymerase II transcriptio... 30 6.4
sp|Q3YVP9|VIAA_SHISS Protein viaA OS=Shigella sonnei (strain Ss0... 24 7.0
sp|Q83IY2|VIAA_SHIFL Protein viaA OS=Shigella flexneri GN=viaA P... 24 7.0
sp|Q0SYT1|VIAA_SHIF8 Protein viaA OS=Shigella flexneri serotype ... 24 7.0
sp|Q329T4|VIAA_SHIDS Protein viaA OS=Shigella dysenteriae seroty... 24 7.0
sp|Q1R4I7|VIAA_ECOUT Protein viaA OS=Escherichia coli (strain UT... 24 7.0
sp|P0ADN0|VIAA_ECOLI Protein viaA OS=Escherichia coli (strain K1... 24 7.0
sp|B1IWZ3|VIAA_ECOLC Protein viaA OS=Escherichia coli (strain AT... 24 7.0
sp|Q8FBS6|VIAA_ECOL6 Protein viaA OS=Escherichia coli O6 GN=viaA... 24 7.0
sp|Q0TAW4|VIAA_ECOL5 Protein viaA OS=Escherichia coli O6:K15:H31... 24 7.0
sp|A1AHS5|VIAA_ECOK1 Protein viaA OS=Escherichia coli O1:K1 / AP... 24 7.0
sp|A8A6K8|VIAA_ECOHS Protein viaA OS=Escherichia coli O9:H4 (str... 24 7.0
sp|P0ADN1|VIAA_ECO57 Protein viaA OS=Escherichia coli O157:H7 GN... 24 7.0
sp|A7ZTV6|VIAA_ECO24 Protein viaA OS=Escherichia coli O139:H28 (... 24 7.0
sp|Q08964|YP216_YEAST Putative ISWI chromatin-remodeling complex... 30 8.3
sp|Q294G7|MED28_DROPS Mediator of RNA polymerase II transcriptio... 30 8.3
sp|P38628|AGM1_YEAST Phosphoacetylglucosamine mutase OS=Saccharo... 30 8.3

>sp|Q9VBQ9|MED28_DROME Mediator of RNA polymerase II transcription
subunit 28 OS=Drosophila melanogaster GN=MED28 PE=1 SV=1
Length = 189

Score = 30.0 bits (66), Expect = 6.4
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -2

Query: 453 FCACLCVLENKVKNSDWNREKFLIETRQGNNYWEDVQEQTEKF 325
F +CL L + NS N+E+ +E ++ N + DV Q E F
Sbjct: 19 FQSCLLTLTKQEPNSGTNKEEIDLEVQKTTNRFIDVARQMEAF 61


>sp|Q3YVP9|VIAA_SHISS Protein viaA OS=Shigella sonnei (strain Ss046)
GN=viaA PE=3 SV=1
Length = 483

Score = 23.9 bits (50), Expect(2) = 7.0
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -1

Query: 367 QQLLGGCARAD--REISSCAQSRRWFD*NSAKQADYM 263
QQ GG A R I QSR WFD ++ +D++
Sbjct: 387 QQFRGGTDLASCFRAIMERLQSREWFDADAVVISDFI 423



Score = 23.9 bits (50), Expect(2) = 7.0
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -3

Query: 278 ASRLHGPRGKPKLIQNLWDFGQTV**RMLRSW 183
A HG G ++ ++W F + R+LR W
Sbjct: 450 AMSAHGKPGIMRIFDHIWRFDTGMRSRLLRRW 481


>sp|Q83IY2|VIAA_SHIFL Protein viaA OS=Shigella flexneri GN=viaA PE=3
SV=1
Length = 483

Score = 23.9 bits (50), Expect(2) = 7.0
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -1

Query: 367 QQLLGGCARAD--REISSCAQSRRWFD*NSAKQADYM 263
QQ GG A R I QSR WFD ++ +D++
Sbjct: 387 QQFRGGTDLASCFRAIMERLQSREWFDADAVVISDFI 423



Score = 23.9 bits (50), Expect(2) = 7.0
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -3

Query: 278 ASRLHGPRGKPKLIQNLWDFGQTV**RMLRSW 183
A HG G ++ ++W F + R+LR W
Sbjct: 450 AMSAHGKPGIMRIFDHIWRFDTGMRSRLLRRW 481


>sp|Q0SYT1|VIAA_SHIF8 Protein viaA OS=Shigella flexneri serotype 5b
(strain 8401) GN=viaA PE=3 SV=1
Length = 483

Score = 23.9 bits (50), Expect(2) = 7.0
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -1

Query: 367 QQLLGGCARAD--REISSCAQSRRWFD*NSAKQADYM 263
QQ GG A R I QSR WFD ++ +D++
Sbjct: 387 QQFRGGTDLASCFRAIMERLQSREWFDADAVVISDFI 423



Score = 23.9 bits (50), Expect(2) = 7.0
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -3

Query: 278 ASRLHGPRGKPKLIQNLWDFGQTV**RMLRSW 183
A HG G ++ ++W F + R+LR W
Sbjct: 450 AMSAHGKPGIMRIFDHIWRFDTGMRSRLLRRW 481


>sp|Q329T4|VIAA_SHIDS Protein viaA OS=Shigella dysenteriae serotype
1 (strain Sd197) GN=viaA PE=3 SV=1
Length = 483

Score = 23.9 bits (50), Expect(2) = 7.0
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -1

Query: 367 QQLLGGCARAD--REISSCAQSRRWFD*NSAKQADYM 263
QQ GG A R I QSR WFD ++ +D++
Sbjct: 387 QQFRGGTDLASCFRAIMERLQSREWFDADAVVISDFI 423



Score = 23.9 bits (50), Expect(2) = 7.0
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -3

Query: 278 ASRLHGPRGKPKLIQNLWDFGQTV**RMLRSW 183
A HG G ++ ++W F + R+LR W
Sbjct: 450 AMSAHGKPGIMRIFDHIWRFDTGMRSRLLRRW 481


>sp|Q1R4I7|VIAA_ECOUT Protein viaA OS=Escherichia coli (strain UTI89
/ UPEC) GN=viaA PE=3 SV=1
Length = 483

Score = 23.9 bits (50), Expect(2) = 7.0
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -1

Query: 367 QQLLGGCARAD--REISSCAQSRRWFD*NSAKQADYM 263
QQ GG A R I QSR WFD ++ +D++
Sbjct: 387 QQFRGGTDLASCFRAIMERLQSREWFDADAVVISDFI 423



Score = 23.9 bits (50), Expect(2) = 7.0
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -3

Query: 278 ASRLHGPRGKPKLIQNLWDFGQTV**RMLRSW 183
A HG G ++ ++W F + R+LR W
Sbjct: 450 AMSAHGKPGIMRIFDHIWRFDTGMRSRLLRRW 481


>sp|P0ADN0|VIAA_ECOLI Protein viaA OS=Escherichia coli (strain K12)
GN=viaA PE=1 SV=1
Length = 483

Score = 23.9 bits (50), Expect(2) = 7.0
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -1

Query: 367 QQLLGGCARAD--REISSCAQSRRWFD*NSAKQADYM 263
QQ GG A R I QSR WFD ++ +D++
Sbjct: 387 QQFRGGTDLASCFRAIMERLQSREWFDADAVVISDFI 423



Score = 23.9 bits (50), Expect(2) = 7.0
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -3

Query: 278 ASRLHGPRGKPKLIQNLWDFGQTV**RMLRSW 183
A HG G ++ ++W F + R+LR W
Sbjct: 450 AMSAHGKPGIMRIFDHIWRFDTGMRSRLLRRW 481


>sp|B1IWZ3|VIAA_ECOLC Protein viaA OS=Escherichia coli (strain ATCC
8739 / DSM 1576 / Crooks) GN=viaA PE=3 SV=1
Length = 483

Score = 23.9 bits (50), Expect(2) = 7.0
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -1

Query: 367 QQLLGGCARAD--REISSCAQSRRWFD*NSAKQADYM 263
QQ GG A R I QSR WFD ++ +D++
Sbjct: 387 QQFRGGTDLASCFRAIMERLQSREWFDADAVVISDFI 423



Score = 23.9 bits (50), Expect(2) = 7.0
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -3

Query: 278 ASRLHGPRGKPKLIQNLWDFGQTV**RMLRSW 183
A HG G ++ ++W F + R+LR W
Sbjct: 450 AMSAHGKPGIMRIFDHIWRFDTGMRSRLLRRW 481


>sp|Q8FBS6|VIAA_ECOL6 Protein viaA OS=Escherichia coli O6 GN=viaA
PE=3 SV=1
Length = 483

Score = 23.9 bits (50), Expect(2) = 7.0
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -1

Query: 367 QQLLGGCARAD--REISSCAQSRRWFD*NSAKQADYM 263
QQ GG A R I QSR WFD ++ +D++
Sbjct: 387 QQFRGGTDLASCFRAIMERLQSREWFDADAVVISDFI 423



Score = 23.9 bits (50), Expect(2) = 7.0
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -3

Query: 278 ASRLHGPRGKPKLIQNLWDFGQTV**RMLRSW 183
A HG G ++ ++W F + R+LR W
Sbjct: 450 AMSAHGKPGIMRIFDHIWRFDTGMRSRLLRRW 481


>sp|Q0TAW4|VIAA_ECOL5 Protein viaA OS=Escherichia coli O6:K15:H31
(strain 536 / UPEC) GN=viaA PE=3 SV=1
Length = 483

Score = 23.9 bits (50), Expect(2) = 7.0
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -1

Query: 367 QQLLGGCARAD--REISSCAQSRRWFD*NSAKQADYM 263
QQ GG A R I QSR WFD ++ +D++
Sbjct: 387 QQFRGGTDLASCFRAIMERLQSREWFDADAVVISDFI 423



Score = 23.9 bits (50), Expect(2) = 7.0
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -3

Query: 278 ASRLHGPRGKPKLIQNLWDFGQTV**RMLRSW 183
A HG G ++ ++W F + R+LR W
Sbjct: 450 AMSAHGKPGIMRIFDHIWRFDTGMRSRLLRRW 481


tr_hit_id A8EY21
Definition tr|A8EY21|A8EY21_RICCK Heme exporter protein B OS=Rickettsia canadensis (strain McKiel)
Align length 106
Score (bit) 33.9
E-value 4.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920067|Adiantum capillus-veneris mRNA, clone:
YMU001_000132_F06.
(502 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A8EY21|A8EY21_RICCK Heme exporter protein B OS=Rickettsia can... 34 4.5
tr|Q8HMI7|Q8HMI7_9TELE NADH dehydrogenase subunit 4L OS=Carapus ... 33 7.6
tr|Q73RA1|Q73RA1_TREDE Membrane protein, putative OS=Treponema d... 33 7.6

>tr|A8EY21|A8EY21_RICCK Heme exporter protein B OS=Rickettsia
canadensis (strain McKiel) GN=A1E_01545 PE=4 SV=1
Length = 215

Score = 33.9 bits (76), Expect = 4.5
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 10/106 (9%)
Frame = +1

Query: 136 IIPHQMSSFIKHKYIFQLLSILHQTVWPKSHKFCMSFGFPRGP-CNLLALLNFSQTIFST 312
I+ +++++ IK+ IF L I+ TV S + FG C L++L+NFS IF +
Sbjct: 13 IVQNRINNIIKYLVIFCLFCII-STVLVNSERDINKFGLIFSVICLLISLINFSSIIFKS 71

Query: 313 EHS*KFLGLLLHIL---PIIVA------LSCLDQKLFTIPITILHF 423
+ L LLL I+ II+A +S +F +PI + F
Sbjct: 72 DLEDGSLELLLSIVSYEEIILAKFFAIFISSTVGLVFILPIIYIFF 117


>tr|Q8HMI7|Q8HMI7_9TELE NADH dehydrogenase subunit 4L OS=Carapus
bermudensis GN=ND4L PE=4 SV=1
Length = 98

Score = 33.1 bits (74), Expect = 7.6
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +1

Query: 331 LGLLLHILPIIVALSCLDQKLFTIPITILHFIFQHTQA 444
LGL LH + +I AL CL+ + T+ +T+ + +HT A
Sbjct: 17 LGLALHRVHLISALLCLEAMMLTLYVTLSVWALEHTSA 54


>tr|Q73RA1|Q73RA1_TREDE Membrane protein, putative OS=Treponema
denticola GN=TDE_0190 PE=4 SV=1
Length = 295

Score = 33.1 bits (74), Expect = 7.6
Identities = 25/108 (23%), Positives = 48/108 (44%)
Frame = +1

Query: 133 IIIPHQMSSFIKHKYIFQLLSILHQTVWPKSHKFCMSFGFPRGPCNLLALLNFSQTIFST 312
II H MS ++Q++ +L ++ +FC++ + P +++ +++Q +FS
Sbjct: 199 IIFYHPMS-------LYQIIMLLIAGLFGTGGQFCVTAAYAHAPAGSISVYDYTQIVFSA 251

Query: 313 EHS*KFLGLLLHILPIIVALSCLDQKLFTIPITILHFIFQHTQACTEV 456
FLG L ++ F I + F+F H + TEV
Sbjct: 252 IFGFAFLGELPDRWSLLG---------FAIIFAVALFMFLHHEDKTEV 290