NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920083
Clone id YMU001_000132_G10
Library
Length 423
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000132_G10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGGCACCCCCAACATATCTGATCTCAAGAGTCCATTCATCAATAGGTACTATGGCAAAGC
TACTACAGTATACTGATGATTCTTTGGAGAGGCACCTAAAGTGAAGTAACTTCCTGAAAG
CTCAATAGGCAGCAAATTGCTAGTTTGTGGCTACAAAGAAGTGTATGTAAAGAGTTATAG
CTGGAGGCCGCTAGTAAGACCAGATCACCAGTTGCCTCAAAAAATTTTGTTTGTTCTCGT
GGCATGTACATTATGTTTGGTGCCTGTTATTCGCTGGTCTCAGCCACATGAGACCACATG
CTTTTCTTTCTGTAGCTTCGATTCATGTGACATTGTCTCATGAACAGCTTGCATTTTGAA
CAAGCATATGCTATACCTCGCAACAAGGCTTTGAAGCCTAGTGAGCGCAGTTGTGCATGC
TGT
■■Homology search results ■■ -
sp_hit_id Q9Y239
Definition sp|Q9Y239|NOD1_HUMAN Nucleotide-binding oligomerization domain-containing protein 1 OS=Homo sapiens
Align length 60
Score (bit) 30.8
E-value 2.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920083|Adiantum capillus-veneris mRNA, clone:
YMU001_000132_G10.
         (423 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Y239|NOD1_HUMAN Nucleotide-binding oligomerization domain-c...    31   2.3  
sp|P41255|SYK_THETH Lysyl-tRNA synthetase OS=Thermus thermophilu...    30   5.0  
sp|Q5SJG7|SYK_THET8 Lysyl-tRNA synthetase OS=Thermus thermophilu...    30   5.0  
sp|Q72JT9|SYK_THET2 Lysyl-tRNA synthetase OS=Thermus thermophilu...    30   5.0  
sp|A4F9B0|COXX1_SACEN Protoheme IX farnesyltransferase 1 OS=Sacc...    29   8.6  

>sp|Q9Y239|NOD1_HUMAN Nucleotide-binding oligomerization
           domain-containing protein 1 OS=Homo sapiens GN=NOD1 PE=1
           SV=1
          Length = 953

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = +2

Query: 110 LPESSIGSKLLVCGYKEVYVKSYSWRPLVRPDHQLPQKILFVLVA----CTLCLVPVIRW 277
           +P   +  K+L+ G+   ++++Y+ R    P+  L  ++L  L A    C+LC VP+  W
Sbjct: 338 VPRQFLRKKVLLRGFSPSHLRAYARRMF--PERALQDRLLSQLEANPNLCSLCSVPLFCW 395


>sp|P41255|SYK_THETH Lysyl-tRNA synthetase OS=Thermus thermophilus
           GN=lysS PE=1 SV=1
          Length = 492

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
 Frame = +2

Query: 95  PKVK*LPESSIGSKLLVCGYK------EVYVKSYSWRPLVRPDHQLPQK 223
           PK + L +  +G  L V G+       EV VK   W PLV+  H LP K
Sbjct: 91  PKYELLKKLDVGDILGVRGHPFTTKTGEVTVKVLDWTPLVKSLHPLPDK 139


>sp|Q5SJG7|SYK_THET8 Lysyl-tRNA synthetase OS=Thermus thermophilus
           (strain HB8 / ATCC 27634 / DSM 579) GN=lysS PE=3 SV=1
          Length = 492

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
 Frame = +2

Query: 95  PKVK*LPESSIGSKLLVCGYK------EVYVKSYSWRPLVRPDHQLPQK 223
           PK + L +  +G  L V G+       EV VK   W PLV+  H LP K
Sbjct: 91  PKYELLKKLDVGDILGVRGHPFTTKTGEVTVKVLDWTPLVKSLHPLPDK 139


>sp|Q72JT9|SYK_THET2 Lysyl-tRNA synthetase OS=Thermus thermophilus
           (strain HB27 / ATCC BAA-163 / DSM 7039) GN=lysS PE=3
           SV=1
          Length = 492

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
 Frame = +2

Query: 95  PKVK*LPESSIGSKLLVCGYK------EVYVKSYSWRPLVRPDHQLPQK 223
           PK + L +  +G  L V G+       EV VK   W PLV+  H LP K
Sbjct: 91  PKYELLKKLDVGDILGVRGHPFTTKTGEVTVKVLDWTPLVKSLHPLPDK 139


>sp|A4F9B0|COXX1_SACEN Protoheme IX farnesyltransferase 1
           OS=Saccharopolyspora erythraea (strain NRRL 23338)
           GN=ctaB1 PE=3 SV=2
          Length = 312

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = +2

Query: 140 LVCGYKEVYVKS-YSWRPLVRPDHQLPQKIL---FVLVACTLCLVPVIRW 277
           L   Y+E Y ++     P+V    Q+  +IL   +  VACTL LVP   W
Sbjct: 200 LAMKYREDYARAGVPMLPVVATPRQVSARILVYSWATVACTLLLVPATSW 249
tr_hit_id Q4AC14
Definition tr|Q4AC14|Q4AC14_BRACM 117M18_4 OS=Brassica campestris
Align length 22
Score (bit) 38.5
E-value 0.17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920083|Adiantum capillus-veneris mRNA, clone:
YMU001_000132_G10.
         (423 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4AC14|Q4AC14_BRACM 117M18_4 OS=Brassica campestris GN=117M18...    39   0.17 
tr|B7U9U1|B7U9U1_CARAS AT5G10010-like protein OS=Cardaminopsis a...    38   0.22 
tr|A7QLP2|A7QLP2_VITVI Chromosome chr13 scaffold_120, whole geno...    38   0.22 
tr|A7Q8Y5|A7Q8Y5_VITVI Chromosome chr9 scaffold_65, whole genome...    38   0.22 
tr|A7PL25|A7PL25_VITVI Chromosome chr7 scaffold_20, whole genome...    38   0.22 
tr|A5C188|A5C188_VITVI Putative uncharacterized protein OS=Vitis...    38   0.22 
tr|A9SQI3|A9SQI3_PHYPA Predicted protein (Fragment) OS=Physcomit...    38   0.28 
tr|B8LNU8|B8LNU8_PICSI Putative uncharacterized protein OS=Picea...    37   0.37 
tr|A9TCH5|A9TCH5_PHYPA Predicted protein (Fragment) OS=Physcomit...    37   0.63 
tr|A2RVJ8|A2RVJ8_ARATH At5g10010 OS=Arabidopsis thaliana PE=2 SV=1     37   0.63 
tr|Q5B0P9|Q5B0P9_EMENI Putative uncharacterized protein OS=Emeri...    36   0.83 
tr|Q8H291|Q8H291_ANACO Putative ATP/GTP binding protein OS=Anana...    36   1.1  
tr|Q4X138|Q4X138_ASPFU Putative uncharacterized protein OS=Asper...    33   5.4  
tr|B0XSG2|B0XSG2_ASPFC Putative uncharacterized protein OS=Asper...    33   5.4  
tr|A1DH47|A1DH47_NEOFI Putative uncharacterized protein OS=Neosa...    33   5.4  
tr|Q2UER0|Q2UER0_ASPOR Predicted protein OS=Aspergillus oryzae G...    33   7.0  
tr|Q3K5E0|Q3K5E0_PSEPF Sodium/hydrogen exchanger OS=Pseudomonas ...    33   9.2  
tr|B6H6J1|B6H6J1_PENCH Pc15g00450 protein OS=Penicillium chrysog...    33   9.2  

>tr|Q4AC14|Q4AC14_BRACM 117M18_4 OS=Brassica campestris GN=117M18_4
           PE=4 SV=1
          Length = 424

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 16/22 (72%), Positives = 19/22 (86%)
 Frame = +2

Query: 5   TPNISDLKSPFINRYYGKATTV 70
           TP++S +KSPFINRYYGKA  V
Sbjct: 402 TPDVSGVKSPFINRYYGKADQV 423


>tr|B7U9U1|B7U9U1_CARAS AT5G10010-like protein OS=Cardaminopsis
           arenosa PE=4 SV=1
          Length = 433

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 16/22 (72%), Positives = 19/22 (86%)
 Frame = +2

Query: 5   TPNISDLKSPFINRYYGKATTV 70
           TP++S +KSPFINRYYGKA  V
Sbjct: 411 TPDVSGVKSPFINRYYGKAHEV 432


>tr|A7QLP2|A7QLP2_VITVI Chromosome chr13 scaffold_120, whole
          genome shotgun sequence OS=Vitis vinifera
          GN=GSVIVT00001709001 PE=4 SV=1
          Length = 36

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 16/22 (72%), Positives = 20/22 (90%)
 Frame = +2

Query: 5  TPNISDLKSPFINRYYGKATTV 70
          TP+IS++K+PFINRYYGKA  V
Sbjct: 14 TPDISNVKAPFINRYYGKAHEV 35


>tr|A7Q8Y5|A7Q8Y5_VITVI Chromosome chr9 scaffold_65, whole genome
          shotgun sequence OS=Vitis vinifera GN=GSVIVT00033240001
          PE=4 SV=1
          Length = 36

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 16/22 (72%), Positives = 20/22 (90%)
 Frame = +2

Query: 5  TPNISDLKSPFINRYYGKATTV 70
          TP+IS++K+PFINRYYGKA  V
Sbjct: 14 TPDISNVKAPFINRYYGKAHEV 35


>tr|A7PL25|A7PL25_VITVI Chromosome chr7 scaffold_20, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00019407001
           PE=4 SV=1
          Length = 333

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 16/22 (72%), Positives = 20/22 (90%)
 Frame = +2

Query: 5   TPNISDLKSPFINRYYGKATTV 70
           TP+IS++K+PFINRYYGKA  V
Sbjct: 311 TPDISNVKAPFINRYYGKAHEV 332


>tr|A5C188|A5C188_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_027100 PE=4 SV=1
          Length = 414

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 16/22 (72%), Positives = 20/22 (90%)
 Frame = +2

Query: 5   TPNISDLKSPFINRYYGKATTV 70
           TP+IS++K+PFINRYYGKA  V
Sbjct: 392 TPDISNVKAPFINRYYGKAHEV 413


>tr|A9SQI3|A9SQI3_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_133483 PE=4 SV=1
          Length = 290

 Score = 37.7 bits (86), Expect = 0.28
 Identities = 16/21 (76%), Positives = 19/21 (90%)
 Frame = +2

Query: 8   PNISDLKSPFINRYYGKATTV 70
           P+IS++KS FINRYYGKAT V
Sbjct: 269 PDISEMKSAFINRYYGKATEV 289


>tr|B8LNU8|B8LNU8_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 343

 Score = 37.4 bits (85), Expect = 0.37
 Identities = 16/21 (76%), Positives = 18/21 (85%)
 Frame = +2

Query: 8   PNISDLKSPFINRYYGKATTV 70
           P+ISD+K PFINRYYGKA  V
Sbjct: 322 PDISDVKVPFINRYYGKAHVV 342


>tr|A9TCH5|A9TCH5_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_143448 PE=4 SV=1
          Length = 290

 Score = 36.6 bits (83), Expect = 0.63
 Identities = 15/21 (71%), Positives = 19/21 (90%)
 Frame = +2

Query: 8   PNISDLKSPFINRYYGKATTV 70
           P+IS++KS FINRYYG+AT V
Sbjct: 269 PDISEMKSAFINRYYGRATEV 289


>tr|A2RVJ8|A2RVJ8_ARATH At5g10010 OS=Arabidopsis thaliana PE=2 SV=1
          Length = 434

 Score = 36.6 bits (83), Expect = 0.63
 Identities = 15/22 (68%), Positives = 19/22 (86%)
 Frame = +2

Query: 5   TPNISDLKSPFINRYYGKATTV 70
           TP++S ++SPFINRYYGKA  V
Sbjct: 412 TPDVSGVQSPFINRYYGKAHEV 433