BP920085
Clone id YMU001_000132_G12
Library
Length 541
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000132_G12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CCGTCTTGATGTGAACTATAGCCTTCTTGGTACCCGAAATAGTCATCAAAGTAAGAGATT
CTTTTGGAAACATGTTACAAGGTAAGTTCATAAGAATTTATGTATAATACTTGGTTAGCG
ACAACAATCTCCTTTCCCAACTTGGGTTGTATCCACTCAATACTCCCAACGGGTGAGGGT
TTATGTTCAAGTGGTCTAAACTCGGGGTTCCTTGCAGCGTAATGGTACCAATCTTGGAAT
GTATTAGGTATAATACAATCCGTGGATATTAACCTTTTTTTTAATCTTCCCCATTATGCA
TGGTAGTGACAAGCCTTTGCACTTCCACTCTTGTTTGAAGATGCTCCTCCACCGTAAGGC
GGAAGAGTATATCCGTCCATATCCCTCAAAGTAAGATGTCAGTCATCTACACACACACCT
CATCACTCAACTTAATTAGAATGATAAAACCAAGATTCAAACTCAAATATTATGTCCTCA
AAACAATATATCAAGATCAAATTTTTATAACCGTAGAAAACCAAAAAGATACATAGTGTC
T
■■Homology search results ■■ -
sp_hit_id Q9HB63
Definition sp|Q9HB63|NET4_HUMAN Netrin-4 OS=Homo sapiens
Align length 39
Score (bit) 33.9
E-value 0.52
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920085|Adiantum capillus-veneris mRNA, clone:
YMU001_000132_G12.
(541 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9HB63|NET4_HUMAN Netrin-4 OS=Homo sapiens GN=NTN4 PE=2 SV=2 34 0.52
sp|P52996|PANB_BACSU 3-methyl-2-oxobutanoate hydroxymethyltransf... 32 1.5
sp|A7Z5Z4|PANB_BACA2 3-methyl-2-oxobutanoate hydroxymethyltransf... 32 1.5
sp|Q975N4|METE_SULTO Probable methylcobalamin:homocysteine methy... 31 3.4
sp|Q974N6|APE2_SULTO Probable aminopeptidase 2 OS=Sulfolobus tok... 31 3.4
sp|Q5WGA3|PANB_BACSK 3-methyl-2-oxobutanoate hydroxymethyltransf... 30 5.8
sp|A4IQ61|PANB_GEOTN 3-methyl-2-oxobutanoate hydroxymethyltransf... 30 7.6
sp|Q5KXX2|PANB_GEOKA 3-methyl-2-oxobutanoate hydroxymethyltransf... 30 7.6
sp|A8FEH7|PANB_BACP2 3-methyl-2-oxobutanoate hydroxymethyltransf... 30 7.6
sp|Q27850|TBP_TETTH TATA-box-binding protein OS=Tetrahymena ther... 30 9.9
sp|A7H574|PANB_CAMJD 3-methyl-2-oxobutanoate hydroxymethyltransf... 30 9.9
sp|Q65I56|PANB_BACLD 3-methyl-2-oxobutanoate hydroxymethyltransf... 30 9.9
sp|P09631|HXA9_MOUSE Homeobox protein Hox-A9 OS=Mus musculus GN=... 30 9.9
sp|P31269|HXA9_HUMAN Homeobox protein Hox-A9 OS=Homo sapiens GN=... 30 9.9

>sp|Q9HB63|NET4_HUMAN Netrin-4 OS=Homo sapiens GN=NTN4 PE=2 SV=2
Length = 628

Score = 33.9 bits (76), Expect = 0.52
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = -3

Query: 269 ISTDCIIPNTFQDWYHYAARNPEFRPLEHKPSPVGSIEW 153
I+ DCI +T DWYH P+FRP+ +K P + EW
Sbjct: 458 ITGDCISSHTDIDWYHEV---PDFRPVHNKSEP--AWEW 491


>sp|P52996|PANB_BACSU 3-methyl-2-oxobutanoate
hydroxymethyltransferase OS=Bacillus subtilis GN=panB
PE=3 SV=1
Length = 277

Score = 32.3 bits (72), Expect = 1.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1

Query: 244 IHSKIGTITLQGTPSLDHLNINPHPLGVLSGY 149
+ I +TL G P + HL + P +GVL GY
Sbjct: 119 VFESIRALTLGGIPVVSHLGLTPQSVGVLGGY 150


>sp|A7Z5Z4|PANB_BACA2 3-methyl-2-oxobutanoate
hydroxymethyltransferase OS=Bacillus amyloliquefaciens
(strain FZB42) GN=panB PE=3 SV=1
Length = 277

Score = 32.3 bits (72), Expect = 1.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1

Query: 244 IHSKIGTITLQGTPSLDHLNINPHPLGVLSGY 149
+ I +TL G P + HL + P +GVL GY
Sbjct: 119 VFESIRALTLGGIPVVSHLGLTPQSVGVLGGY 150


>sp|Q975N4|METE_SULTO Probable methylcobalamin:homocysteine
methyltransferase OS=Sulfolobus tokodaii GN=metE PE=3
SV=1
Length = 338

Score = 31.2 bits (69), Expect = 3.4
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = -3

Query: 182 KPSPVGSIEWIQPKLGKEIVVANQVLYINSYELTL*HVSKRISYFDDYFGYQEGYSSHQD 3
KPS V +E+I+P L E + A V Y + ++T+ Y + Y E Y S +D
Sbjct: 98 KPSVVSKVEYIKPMLVDEFLFAKSVSYTENLKITI-----TGPYTIAEWSYNEYYKSKKD 152


>sp|Q974N6|APE2_SULTO Probable aminopeptidase 2 OS=Sulfolobus
tokodaii GN=ape2 PE=3 SV=1
Length = 781

Score = 31.2 bits (69), Expect = 3.4
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -3

Query: 170 VGSIEWIQPKLGK-EIVVANQVLYINSYELTL*HVSKRISYFDDYFG 33
+G E I+ KLG+ +I+VA I+ + L K I Y++DYFG
Sbjct: 172 IGKFEEIKDKLGEVDIIVATVPGRISKGKFALDVAKKVIEYYEDYFG 218


>sp|Q5WGA3|PANB_BACSK 3-methyl-2-oxobutanoate
hydroxymethyltransferase OS=Bacillus clausii (strain
KSM-K16) GN=panB PE=3 SV=1
Length = 279

Score = 30.4 bits (67), Expect = 5.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1

Query: 244 IHSKIGTITLQGTPSLDHLNINPHPLGVLSGY 149
I S + +T G P + H+ + P +GVL GY
Sbjct: 119 IASTVQRLTAAGVPVVGHIGLTPQSVGVLGGY 150


>sp|A4IQ61|PANB_GEOTN 3-methyl-2-oxobutanoate
hydroxymethyltransferase OS=Geobacillus
thermodenitrificans (strain NG80-2) GN=panB PE=3 SV=1
Length = 279

Score = 30.0 bits (66), Expect = 7.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1

Query: 232 IGTITLQGTPSLDHLNINPHPLGVLSGY 149
I +T G P + HL + P +GVL GY
Sbjct: 123 IAALTKAGVPVVAHLGLTPQSVGVLGGY 150


>sp|Q5KXX2|PANB_GEOKA 3-methyl-2-oxobutanoate
hydroxymethyltransferase OS=Geobacillus kaustophilus
GN=panB PE=3 SV=1
Length = 279

Score = 30.0 bits (66), Expect = 7.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1

Query: 232 IGTITLQGTPSLDHLNINPHPLGVLSGY 149
I +T G P + HL + P +GVL GY
Sbjct: 123 IAALTKAGVPVVAHLGLTPQSVGVLGGY 150


>sp|A8FEH7|PANB_BACP2 3-methyl-2-oxobutanoate
hydroxymethyltransferase OS=Bacillus pumilus (strain
SAFR-032) GN=panB PE=3 SV=1
Length = 279

Score = 30.0 bits (66), Expect = 7.6
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1

Query: 244 IHSKIGTITLQGTPSLDHLNINPHPLGVLSGY 149
+ I +T G P + HL + P +GVL GY
Sbjct: 119 VFESIQALTRGGIPVVSHLGLTPQSVGVLGGY 150


>sp|Q27850|TBP_TETTH TATA-box-binding protein OS=Tetrahymena
thermophila PE=3 SV=1
Length = 246

Score = 29.6 bits (65), Expect = 9.9
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2

Query: 440 NDKTKIQTQILCPQNNISRSNFYNRRKPKRYIVS 541
+DKT QT L P N++++SN ++ K K I+S
Sbjct: 3 SDKTSQQTFKLAPNNSVAQSNSIDQNKNKNNILS 36


tr_hit_id B2RNC2
Definition tr|B2RNC2|B2RNC2_HUMAN Netrin 4 (Netrin 4, isoform CRA_a) OS=Homo sapiens
Align length 39
Score (bit) 33.9
E-value 5.6
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920085|Adiantum capillus-veneris mRNA, clone:
YMU001_000132_G12.
(541 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B2RNC2|B2RNC2_HUMAN Netrin 4 (Netrin 4, isoform CRA_a) OS=Hom... 34 5.6
tr|B2RE43|B2RE43_HUMAN cDNA, FLJ96916, highly similar to Homo sa... 34 5.6
tr|Q6FWK8|Q6FWK8_CANGA Similar to uniprot|P47147 Saccharomyces c... 33 7.3
tr|Q4HSJ0|Q4HSJ0_CAMUP Probable periplasmic protein Cj0892c OS=C... 33 9.5
tr|A9BL22|A9BL22_9CRYP Rrp3 OS=Cryptophyta GN=HAN_3g395 PE=3 SV=1 33 9.5

>tr|B2RNC2|B2RNC2_HUMAN Netrin 4 (Netrin 4, isoform CRA_a) OS=Homo
sapiens GN=NTN4 PE=2 SV=1
Length = 628

Score = 33.9 bits (76), Expect = 5.6
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = -3

Query: 269 ISTDCIIPNTFQDWYHYAARNPEFRPLEHKPSPVGSIEW 153
I+ DCI +T DWYH P+FRP+ +K P + EW
Sbjct: 458 ITGDCISSHTDIDWYHEV---PDFRPVHNKSEP--AWEW 491


>tr|B2RE43|B2RE43_HUMAN cDNA, FLJ96916, highly similar to Homo
sapiens netrin 4 (NTN4), mRNA OS=Homo sapiens PE=2 SV=1
Length = 628

Score = 33.9 bits (76), Expect = 5.6
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = -3

Query: 269 ISTDCIIPNTFQDWYHYAARNPEFRPLEHKPSPVGSIEW 153
I+ DCI +T DWYH P+FRP+ +K P + EW
Sbjct: 458 ITGDCISSHTDIDWYHEV---PDFRPVHNKSEP--AWEW 491


>tr|Q6FWK8|Q6FWK8_CANGA Similar to uniprot|P47147 Saccharomyces
cerevisiae YJR110w OS=Candida glabrata GN=CAGL0C04895g
PE=4 SV=1
Length = 689

Score = 33.5 bits (75), Expect = 7.3
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -3

Query: 245 NTFQDWYHYAARNPEFRPLEHKPSPVGSIEWIQPKLGK 132
NT W ++ +R EF + ++ P GS +WI P LGK
Sbjct: 589 NTNSVWDYFNSRKLEFTNVSYQGIPEGSDDWILPDLGK 626


>tr|Q4HSJ0|Q4HSJ0_CAMUP Probable periplasmic protein Cj0892c
OS=Campylobacter upsaliensis RM3195 GN=CUP0272 PE=4 SV=1
Length = 160

Score = 33.1 bits (74), Expect = 9.5
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +3

Query: 423 SLNLIRMIKPRFKLKYYVLKTIYQDQIFITVENQK 527
S+ +R FK+KY++LK+I +IF+ +NQK
Sbjct: 103 SMFCLRQTLDSFKVKYFLLKSIESPEIFLDTDNQK 137


>tr|A9BL22|A9BL22_9CRYP Rrp3 OS=Cryptophyta GN=HAN_3g395 PE=3 SV=1
Length = 398

Score = 33.1 bits (74), Expect = 9.5
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 8/51 (15%)
Frame = +3

Query: 381 IPQSKMSVIYTHTSSLNLIRM--------IKPRFKLKYYVLKTIYQDQIFI 509
+P++K S+ ++ T SLNL + +K + KY V+KT+ Q+ IFI
Sbjct: 173 LPKNKQSLFFSATMSLNLENLQKNNMKNPVKIQINRKYKVVKTLQQNYIFI 223