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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920089
Clone id YMU001_000132_H04
Library
Length 457
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000132_H04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATTCGATTCTCTTACCTTGGCAGGCAAGCGAGTGGCCAAAGGCCCACAAAAGGCCAAGCT
TTACCGCCATCTTGGAGGTAATACACCTAAAGCACAATGGGTTGTTGCGGACAAAGCTGT
TTCTTGGGAGTTTACCAGAGATGGAGATGATCATGACGAAGATGAAGATGACGGCGGGGA
TGGTGTGAGTGGATCGTGGAAGACATGGTATCTTTTGGTTGGTAGCAGGGTGAGTGCTCG
TGTAGGTGAGAAGCTGCAAGCAAAATTCTTTGGAGAGCAGATGCGCGTTGACTTTGTGTA
CTATGGTGTGTGGGCACTGAAGTTCTCCACTCGCTTAGAGTTTCAAGACTTAGAGACAGA
GTTTCGGAATTGTATGTCTGAGAATACCTACATGCTAGAGGCTACTGAGGAGAACAAGAT
CAAAGTCTTTGGAAAGGACTTTATTGGCTGGGCCAAA
■■Homology search results ■■ -
sp_hit_id P40781
Definition sp|P40781|CYPR4_CYNCA Protein CYPRO4 OS=Cynara cardunculus
Align length 63
Score (bit) 84.0
E-value 3.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920089|Adiantum capillus-veneris mRNA, clone:
YMU001_000132_H04.
         (457 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P40781|CYPR4_CYNCA Protein CYPRO4 OS=Cynara cardunculus GN=CY...    84   3e-16
sp|Q0AYC7|SYI_SYNWW Isoleucyl-tRNA synthetase OS=Syntrophomonas ...    30   5.0  
sp|P26179|BCHZ_RHOCA Chlorophyllide reductase subunit Z OS=Rhodo...    30   5.0  
sp|Q9UKZ4|TEN1_HUMAN Teneurin-1 OS=Homo sapiens GN=ODZ1 PE=1 SV=2      29   8.4  
sp|A8AW24|SYI_STRGC Isoleucyl-tRNA synthetase OS=Streptococcus g...    29   8.6  

>sp|P40781|CYPR4_CYNCA Protein CYPRO4 OS=Cynara cardunculus
           GN=CYPRO4 PE=2 SV=1
          Length = 501

 Score = 84.0 bits (206), Expect = 3e-16
 Identities = 36/63 (57%), Positives = 49/63 (77%)
 Frame = +2

Query: 269 FGEQMRVDFVYYGVWALKFSTRLEFQDLETEFRNCMSENTYMLEATEENKIKVFGKDFIG 448
           FG+Q RVDFV  GVWALKF    ++++  T F++C+ EN Y L+A++ENK+KV+GKDFIG
Sbjct: 2   FGDQRRVDFVDSGVWALKFMRDEDYREFVTRFQSCLFENVYGLKASDENKVKVYGKDFIG 61

Query: 449 WAK 457
           W K
Sbjct: 62  WVK 64


>sp|Q0AYC7|SYI_SYNWW Isoleucyl-tRNA synthetase OS=Syntrophomonas
           wolfei subsp. wolfei (strain Goettingen) GN=ileS PE=3
           SV=1
          Length = 927

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
 Frame = +2

Query: 185 VSGSWKTWYLLVGSRVSARVGEKLQAKFFGEQMRVDFVYYGV----WALKFSTRLEFQDL 352
           V G W+  YL +         E +Q K FGE  +  F+Y G+    W     T L   + 
Sbjct: 148 VRGDWEDPYLTLSPGF-----ESIQIKVFGEMAKKGFIYKGLKPVYWCGDCETAL--AEA 200

Query: 353 ETEFRNCMSENTYMLEATEENK 418
           E E+   +S + Y+    ++ K
Sbjct: 201 EVEYNEKVSPSIYVKFPVKDGK 222


>sp|P26179|BCHZ_RHOCA Chlorophyllide reductase subunit Z
           OS=Rhodobacter capsulatus GN=bchZ PE=3 SV=1
          Length = 490

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 44  PQKAKLYRHLGGNTPKAQWVVADKAVSWEFT 136
           PQ   L R L     + QW  AD+A++W FT
Sbjct: 106 PQGTNLQRFLARTIDEDQWQCADRAMTWLFT 136


>sp|Q9UKZ4|TEN1_HUMAN Teneurin-1 OS=Homo sapiens GN=ODZ1 PE=1 SV=2
          Length = 2725

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 17/37 (45%), Positives = 18/37 (48%)
 Frame = +3

Query: 204 HGIFWLVAG*VLV*VRSCKQNSLESRCALTLCTMVCG 314
           HG F L AG     V SC      S C+  LCTM CG
Sbjct: 669 HGTFLLDAG-----VCSCDPKWTGSDCSTELCTMECG 700


>sp|A8AW24|SYI_STRGC Isoleucyl-tRNA synthetase OS=Streptococcus
           gordonii (strain Challis / ATCC 35105 / CH1 / DL1 /
           V288) GN=ileS PE=3 SV=1
          Length = 930

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
 Frame = +2

Query: 185 VSGSWKTWYLLVGSRVSARVGEKLQAKFFGEQMRVDFVYYGVWAL--KFSTRLEFQDLET 358
           VSG W+  Y+ +     A      Q + FGE  +  ++Y G   +   +S+     + E 
Sbjct: 144 VSGDWENPYVTLTPDYEAA-----QIRVFGEMAKKGYIYRGAKPVYWSWSSESALAEAEI 198

Query: 359 EFRNCMSENTYMLEATEENK 418
           E+ + +S + Y     ++ K
Sbjct: 199 EYHDLLSTSLYYANRVKDGK 218
tr_hit_id Q9LJK5
Definition tr|Q9LJK5|Q9LJK5_ARATH Dem protein OS=Arabidopsis thaliana
Align length 136
Score (bit) 133.0
E-value 5.0e-30
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920089|Adiantum capillus-veneris mRNA, clone:
YMU001_000132_H04.
         (457 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9LJK5|Q9LJK5_ARATH Dem protein OS=Arabidopsis thaliana GN=At...   133   5e-30
tr|Q6VVW7|Q6VVW7_SOLLC DEM2 OS=Solanum lycopersicum GN=Dem2 PE=2...   132   9e-30
tr|Q6VVW8|Q6VVW8_SOLLC DEM2 OS=Solanum lycopersicum GN=Dem2 PE=4...   132   1e-29
tr|A7NTV6|A7NTV6_VITVI Chromosome chr18 scaffold_1, whole genome...   131   2e-29
tr|A5AH24|A5AH24_VITVI Putative uncharacterized protein OS=Vitis...   131   2e-29
tr|A9TTW4|A9TTW4_PHYPA Predicted protein OS=Physcomitrella paten...   129   9e-29
tr|B7FFC8|B7FFC8_MEDTR Putative uncharacterized protein (Fragmen...   124   3e-27
tr|O04394|O04394_SOLLC Dem protein OS=Solanum lycopersicum GN=de...   121   2e-26
tr|A9U2M9|A9U2M9_PHYPA Predicted protein OS=Physcomitrella paten...   113   5e-24
tr|B6UCN7|B6UCN7_MAIZE Protein CYPRO4 OS=Zea mays PE=2 SV=1           111   2e-23
tr|Q9SZB7|Q9SZB7_ARATH Dem-like protein OS=Arabidopsis thaliana ...   111   2e-23
tr|Q6ETM2|Q6ETM2_ORYSJ Os02g0178500 protein OS=Oryza sativa subs...   110   3e-23
tr|A9SNF7|A9SNF7_PHYPA Predicted protein OS=Physcomitrella paten...   104   2e-21
tr|B6UDP8|B6UDP8_MAIZE Protein CYPRO4 OS=Zea mays PE=2 SV=1            94   3e-18
tr|B6UBL0|B6UBL0_MAIZE Protein CYPRO4 OS=Zea mays PE=2 SV=1            94   3e-18
tr|Q6K4M9|Q6K4M9_ORYSJ Os02g0789600 protein OS=Oryza sativa subs...    89   1e-16
tr|A2XAF1|A2XAF1_ORYSI Putative uncharacterized protein OS=Oryza...    89   1e-16
tr|A7P9J1|A7P9J1_VITVI Chromosome chr3 scaffold_8, whole genome ...    84   3e-15
tr|A3AC52|A3AC52_ORYSJ Putative uncharacterized protein OS=Oryza...    79   9e-14
tr|B4FNP4|B4FNP4_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.099
tr|A5BIB3|A5BIB3_VITVI Putative uncharacterized protein OS=Vitis...    37   0.49 
tr|B6ABX9|B6ABX9_9CRYT Putative uncharacterized protein OS=Crypt...    33   5.4  
tr|B6MJD4|B6MJD4_BRAFL Putative uncharacterized protein OS=Branc...    33   9.2  

>tr|Q9LJK5|Q9LJK5_ARATH Dem protein OS=Arabidopsis thaliana
           GN=At3g19240 PE=4 SV=1
          Length = 648

 Score =  133 bits (334), Expect = 5e-30
 Identities = 64/136 (47%), Positives = 87/136 (63%), Gaps = 3/136 (2%)
 Frame = +2

Query: 56  KLYRHLGGNTPKAQWVVADKAVSWEFTRXXXXXXXXXXXXXXXVS---GSWKTWYLLVGS 226
           KLYRH+GGNTPKA+W+V+DK  S++F +                    G    W+L VG+
Sbjct: 90  KLYRHIGGNTPKAKWIVSDKMTSYKFVKTSSVDGEDIDDYDDCEESGEGGESFWFLGVGT 149

Query: 227 RVSARVGEKLQAKFFGEQMRVDFVYYGVWALKFSTRLEFQDLETEFRNCMSENTYMLEAT 406
           +V ARV   +Q K FG+Q RVDFV  GVWALKF T  +++   T F++ + EN Y + A+
Sbjct: 150 KVKARVSTDMQLKMFGDQRRVDFVSNGVWALKFLTDEDYRKFVTRFQDYLFENVYKIRAS 209

Query: 407 EENKIKVFGKDFIGWA 454
           EEN++KV+GKDFIGWA
Sbjct: 210 EENRVKVYGKDFIGWA 225


>tr|Q6VVW7|Q6VVW7_SOLLC DEM2 OS=Solanum lycopersicum GN=Dem2 PE=2
           SV=1
          Length = 639

 Score =  132 bits (332), Expect = 9e-30
 Identities = 60/134 (44%), Positives = 84/134 (62%)
 Frame = +2

Query: 56  KLYRHLGGNTPKAQWVVADKAVSWEFTRXXXXXXXXXXXXXXXVSGSWKTWYLLVGSRVS 235
           KLY H+GGNTPKA+W+++ K  ++EF +                 G    W L VG ++ 
Sbjct: 81  KLYLHVGGNTPKAKWIISQKLTNYEFVKTLKIGGDDEDDYGSSSGGDEGFWVLKVGKKIK 140

Query: 236 ARVGEKLQAKFFGEQMRVDFVYYGVWALKFSTRLEFQDLETEFRNCMSENTYMLEATEEN 415
            RV   +Q K FG+Q RVDFV  GVWALKF    E+++  T+F++C+ EN Y +EATE N
Sbjct: 141 VRVSTDMQLKMFGDQRRVDFVDNGVWALKFFVDDEYRNFITKFQDCLFENVYGMEATEAN 200

Query: 416 KIKVFGKDFIGWAK 457
           K+K++GK+FIGW K
Sbjct: 201 KVKIYGKEFIGWLK 214


>tr|Q6VVW8|Q6VVW8_SOLLC DEM2 OS=Solanum lycopersicum GN=Dem2 PE=4
           SV=1
          Length = 639

 Score =  132 bits (331), Expect = 1e-29
 Identities = 59/134 (44%), Positives = 84/134 (62%)
 Frame = +2

Query: 56  KLYRHLGGNTPKAQWVVADKAVSWEFTRXXXXXXXXXXXXXXXVSGSWKTWYLLVGSRVS 235
           KLY H+GGNTPKA+W+++ K  ++EF +                 G    W L VG ++ 
Sbjct: 81  KLYLHVGGNTPKAKWIISQKLTNYEFVKTLKIGGDDEDDYGSSSGGDEGFWVLKVGKKIK 140

Query: 236 ARVGEKLQAKFFGEQMRVDFVYYGVWALKFSTRLEFQDLETEFRNCMSENTYMLEATEEN 415
            RV   +Q K FG+Q R+DFV  GVWALKF    E+++  T+F++C+ EN Y +EATE N
Sbjct: 141 VRVSTDMQLKMFGDQRRIDFVDNGVWALKFFVDDEYRNFITKFQDCLFENVYGMEATEAN 200

Query: 416 KIKVFGKDFIGWAK 457
           K+K++GK+FIGW K
Sbjct: 201 KVKIYGKEFIGWLK 214


>tr|A7NTV6|A7NTV6_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00014814001
           PE=4 SV=1
          Length = 632

 Score =  131 bits (329), Expect = 2e-29
 Identities = 64/139 (46%), Positives = 89/139 (64%), Gaps = 1/139 (0%)
 Frame = +2

Query: 44  PQKAKLYRHLGGNTPKAQWVVADKAVSWEFTRXXXXXXXXXXXXXXXVSG-SWKTWYLLV 220
           P   KLY ++GGNTPKA+WV ++K  S+ F +                 G SW  W L V
Sbjct: 70  PNAVKLYLYIGGNTPKAKWVTSEKLTSYSFLKTCGNGGSDDDEQDDEEGGESW--WILKV 127

Query: 221 GSRVSARVGEKLQAKFFGEQMRVDFVYYGVWALKFSTRLEFQDLETEFRNCMSENTYMLE 400
           GS+V A+V  ++Q K FG+Q RVDFV  GVWA+KF +  E+++   +F++C+ ENTY  E
Sbjct: 128 GSKVRAKVALEMQLKTFGDQCRVDFVSQGVWAMKFFSEDEYRNFVGKFQDCLFENTYGFE 187

Query: 401 ATEENKIKVFGKDFIGWAK 457
           +T+ NK+KV+GKDFIGW K
Sbjct: 188 STDANKLKVYGKDFIGWVK 206


>tr|A5AH24|A5AH24_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_043502 PE=4 SV=1
          Length = 632

 Score =  131 bits (329), Expect = 2e-29
 Identities = 64/139 (46%), Positives = 89/139 (64%), Gaps = 1/139 (0%)
 Frame = +2

Query: 44  PQKAKLYRHLGGNTPKAQWVVADKAVSWEFTRXXXXXXXXXXXXXXXVSG-SWKTWYLLV 220
           P   KLY ++GGNTPKA+WV ++K  S+ F +                 G SW  W L V
Sbjct: 70  PNAVKLYLYIGGNTPKAKWVTSEKLTSYSFLKTCGNGGSDDDEQDDEEGGESW--WILKV 127

Query: 221 GSRVSARVGEKLQAKFFGEQMRVDFVYYGVWALKFSTRLEFQDLETEFRNCMSENTYMLE 400
           GS+V A+V  ++Q K FG+Q RVDFV  GVWA+KF +  E+++   +F++C+ ENTY  E
Sbjct: 128 GSKVRAKVALEMQLKTFGDQCRVDFVSQGVWAMKFFSEDEYRNFVGKFQDCLFENTYGFE 187

Query: 401 ATEENKIKVFGKDFIGWAK 457
           +T+ NK+KV+GKDFIGW K
Sbjct: 188 STDANKLKVYGKDFIGWVK 206


>tr|A9TTW4|A9TTW4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_198241 PE=4 SV=1
          Length = 546

 Score =  129 bits (323), Expect = 9e-29
 Identities = 61/143 (42%), Positives = 85/143 (59%), Gaps = 7/143 (4%)
 Frame = +2

Query: 50  KAKLYRHLGGNTPKAQWVVADKAVSWEFTRXXXXXXXXXXXXXXXVSGSWK-------TW 208
           + KLY+H+GG TP A+WV  +K + +EF R                 G WK       +W
Sbjct: 3   RVKLYQHVGGTTPAAKWVPVEKQIGYEFVREDEEDD----------DGEWKLNTKNFRSW 52

Query: 209 YLLVGSRVSARVGEKLQAKFFGEQMRVDFVYYGVWALKFSTRLEFQDLETEFRNCMSENT 388
            LLVG +  A V + LQAKFF +Q+RVDF++ GVWA+KF    ++     ++ NC+ EN 
Sbjct: 53  LLLVGGKFGAPVDDNLQAKFFDDQLRVDFIWKGVWAMKFMNSTDYHTFVEKYNNCLFENV 112

Query: 389 YMLEATEENKIKVFGKDFIGWAK 457
           + L  TEENKIK+FGKDF+ WA+
Sbjct: 113 HGLPPTEENKIKIFGKDFVVWAR 135


>tr|B7FFC8|B7FFC8_MEDTR Putative uncharacterized protein (Fragment)
           OS=Medicago truncatula PE=2 SV=1
          Length = 237

 Score =  124 bits (310), Expect = 3e-27
 Identities = 57/144 (39%), Positives = 86/144 (59%), Gaps = 4/144 (2%)
 Frame = +2

Query: 38  KGPQKAKLYRHLGGNTPKAQWVVADKAVSWEFTRXXXXXXXXXXXXXXXVSGSWKT---- 205
           + P   KL+ H+GGN+P A+WV+++K  ++ F +                 G        
Sbjct: 66  QNPNAVKLHLHIGGNSPNAKWVISEKFTTYSFVKTRCVGGNSDDDEDEEEDGDDDADEGF 125

Query: 206 WYLLVGSRVSARVGEKLQAKFFGEQMRVDFVYYGVWALKFSTRLEFQDLETEFRNCMSEN 385
           W L +GS++ ++VG ++Q K   +Q RVDF+  GVWA+KF T  +F     +F+NC  EN
Sbjct: 126 WVLKIGSKIRSKVGGEMQLKTLADQRRVDFIAKGVWAMKFFTEQDFDAFLVKFQNCTFEN 185

Query: 386 TYMLEATEENKIKVFGKDFIGWAK 457
           T+  EAT+ENK+KV+GKDF+GWAK
Sbjct: 186 THGYEATDENKLKVYGKDFLGWAK 209


>tr|O04394|O04394_SOLLC Dem protein OS=Solanum lycopersicum GN=dem
           PE=2 SV=1
          Length = 644

 Score =  121 bits (304), Expect = 2e-26
 Identities = 57/133 (42%), Positives = 82/133 (61%)
 Frame = +2

Query: 56  KLYRHLGGNTPKAQWVVADKAVSWEFTRXXXXXXXXXXXXXXXVSGSWKTWYLLVGSRVS 235
           KLY H+GGNT  ++WVV+DK  ++ F +                  +W  W L +GS+V 
Sbjct: 87  KLYLHVGGNTANSKWVVSDKVTAYSFVKSGSEDGSDDDENEETEENAW--WVLKIGSKVR 144

Query: 236 ARVGEKLQAKFFGEQMRVDFVYYGVWALKFSTRLEFQDLETEFRNCMSENTYMLEATEEN 415
           A++ E LQ K F EQ RVDFV  GVWA++F    E++     +++C+ ENTY  EA +EN
Sbjct: 145 AKIDENLQLKAFKEQKRVDFVANGVWAVRFFGEEEYKAFIDLYQSCLFENTYGFEANDEN 204

Query: 416 KIKVFGKDFIGWA 454
           ++KV+GKDF+GWA
Sbjct: 205 RVKVYGKDFMGWA 217


>tr|A9U2M9|A9U2M9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_154861 PE=4 SV=1
          Length = 623

 Score =  113 bits (282), Expect = 5e-24
 Identities = 63/153 (41%), Positives = 85/153 (55%), Gaps = 5/153 (3%)
 Frame = +2

Query: 8   SLTLAGKRVAKGPQKAKLYRHLGGNTPKAQWVVADKAVSWEFTRXXXXXXXXXXXXXXXV 187
           SLTL G     G +KAKLY+++ G     +W+ A K+V W+F +                
Sbjct: 64  SLTLDGPASVSGLRKAKLYQYIQG-----KWLTAAKSVGWQFVKEEDGDDEEDEEDEEWR 118

Query: 188 SGS-----WKTWYLLVGSRVSARVGEKLQAKFFGEQMRVDFVYYGVWALKFSTRLEFQDL 352
           S +     +  W   VG    ARV ++LQ  F+ +QMRVDFV  GVWALKF  + +F+  
Sbjct: 119 SSTVGHKNYSFWMFEVGG-ARARVDDRLQMHFYEDQMRVDFVAKGVWALKFPIKEQFRAC 177

Query: 353 ETEFRNCMSENTYMLEATEENKIKVFGKDFIGW 451
             E+ +   ENTY LE TE NK+KVFGKDF+GW
Sbjct: 178 SIEYEDAKFENTYFLEPTEANKVKVFGKDFLGW 210


>tr|B6UCN7|B6UCN7_MAIZE Protein CYPRO4 OS=Zea mays PE=2 SV=1
          Length = 655

 Score =  111 bits (278), Expect = 2e-23
 Identities = 58/134 (43%), Positives = 78/134 (58%)
 Frame = +2

Query: 56  KLYRHLGGNTPKAQWVVADKAVSWEFTRXXXXXXXXXXXXXXXVSGSWKTWYLLVGSRVS 235
           KLY H+GG++P A+W+V+D+  +  F R                +     W L+VGS++ 
Sbjct: 95  KLYLHIGGSSPSAKWIVSDRLAAASFVRAGAGAGDGDDEDDDAPAAGGP-WSLVVGSKIR 153

Query: 236 ARVGEKLQAKFFGEQMRVDFVYYGVWALKFSTRLEFQDLETEFRNCMSENTYMLEATEEN 415
           ARVG +LQ K F  Q RVDFV  GVWALKF     F D   +  +CM EN+Y + AT+E 
Sbjct: 154 ARVGPELQLKAFPAQRRVDFVADGVWALKFLHSDGFGDFCAKHHSCMFENSYGVAATDEG 213

Query: 416 KIKVFGKDFIGWAK 457
           + KVFGKDF  WA+
Sbjct: 214 RAKVFGKDFAAWAR 227