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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920104
Clone id YMU001_000133_A08
Library
Length 491
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000133_A08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATTTGATCCAGCCCTTGGAGCCTCTTTCTATGCTGCAAACTCTGTGCCACCATTGAAGTC
TGTTGCAGCTAAAGATGATGCTGCCACCATCGAAGTGTTTCTCGCTTTCCTAAACACTTC
TTTCAAGGCTTACATATTTGGGCATACAGCAAGTGCAAGTGTCCCTACAAAGCCTTGCTA
TGATGAGACTTCTCTGAACGCTACTCCAACTGATCTCCTTCAAGCTACCTTGGATGCTTC
TTCCAATCCAATATCCAAATTGGATTTATTTGATGTTTATATTGTTGTTCCTCTTTCACC
TGAGCATCATTTCCACTCTTTACCGGTTGAGAGCCTCTTCTACACGGACTCTCAAGCTGC
TGCCACTCCCCTGAGTTGCTTTCCTTTGACACTTACCAATGCTCAAGCATTACGAGCACC
AGGCAAATCCCTACTTCCATGGATATCAATCAACTTTGATCCAGGAGGTGAAGTTCTCAT
GGTAGGTCACT
■■Homology search results ■■ -
sp_hit_id Q9KSZ1
Definition sp|Q9KSZ1|BIOD_VIBCH Dethiobiotin synthetase OS=Vibrio cholerae
Align length 34
Score (bit) 30.4
E-value 4.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920104|Adiantum capillus-veneris mRNA, clone:
YMU001_000133_A08.
         (491 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9KSZ1|BIOD_VIBCH Dethiobiotin synthetase OS=Vibrio cholerae ...    30   4.5  
sp|Q9C5Y0|PLDD1_ARATH Phospholipase D delta OS=Arabidopsis thali...    30   5.9  
sp|Q9RGR0|LCBA_NEIME Capsular polysaccharide phosphotransferase ...    30   5.9  
sp|Q28107|FA5_BOVIN Coagulation factor V OS=Bos taurus GN=F5 PE=...    30   5.9  
sp|O32975|CSD1_MYCLE Probable cysteine desulfurase 1 OS=Mycobact...    30   5.9  

>sp|Q9KSZ1|BIOD_VIBCH Dethiobiotin synthetase OS=Vibrio cholerae
           GN=bioD PE=3 SV=2
          Length = 231

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 371 LSCFPLTLTNAQALRAPGKSLLPWISINFDPGGE 472
           L C    +  A+A+RA G  L+ WI+   +PG E
Sbjct: 150 LGCLSHAILTAEAIRADGLELVGWIANRINPGTE 183


>sp|Q9C5Y0|PLDD1_ARATH Phospholipase D delta OS=Arabidopsis thaliana
           GN=PLDDELTA PE=1 SV=2
          Length = 868

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +2

Query: 269 FDVYIVVPLSPEHHFHSLPVESLFYTDSQ 355
           F VY+V+PL PE    S PV+ + Y  SQ
Sbjct: 627 FAVYVVIPLWPEGDPKSGPVQEILYWQSQ 655


>sp|Q9RGR0|LCBA_NEIME Capsular polysaccharide phosphotransferase
           lcbA OS=Neisseria meningitidis GN=lcbA PE=3 SV=1
          Length = 366

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +2

Query: 272 DVYIVVPLSPEHHFHSLPVESLFYTDS--QAAATPLSCFPLTLTNAQALR 415
           DV++  PL  EH FH+  + SLF  D   Q  AT  +  P    +   +R
Sbjct: 184 DVFVARPLHREHFFHANGIASLFIADKSLQKMATKGTITPTLSASQNCIR 233


>sp|Q28107|FA5_BOVIN Coagulation factor V OS=Bos taurus GN=F5 PE=1
            SV=1
          Length = 2211

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 27/83 (32%), Positives = 36/83 (43%)
 Frame = +2

Query: 173  PCYDETSLNATPTDLLQATLDASSNPISKLDLFDVYIVVPLSPEHHFHSLPVESLFYTDS 352
            P +D+TS N T       T   SS P       D+Y  V  SPE H+   P++    T S
Sbjct: 1086 PDHDQTSPNDT-------TSQTSSPP-------DLYPTV--SPEEHYQIFPIQDSDPTHS 1129

Query: 353  QAAATPLSCFPLTLTNAQALRAP 421
              A +  S  P   T A + R+P
Sbjct: 1130 TTAPSNRSPDPTHSTTAPSNRSP 1152


>sp|O32975|CSD1_MYCLE Probable cysteine desulfurase 1
           OS=Mycobacterium leprae GN=csd1 PE=3 SV=1
          Length = 611

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 185 ETSLNATPTDLLQATLDASSNPISKLDLFDVYIVVPLSPE 304
           +T+  A+  +L   T D    P++++ + DVY+  P SPE
Sbjct: 32  DTTTVASAGELAVGTTDPCPAPVAQIGVADVYVPAPTSPE 71
tr_hit_id B6PYN4
Definition tr|B6PYN4|B6PYN4_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae
Align length 97
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920104|Adiantum capillus-veneris mRNA, clone:
YMU001_000133_A08.
         (491 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6PYN4|B6PYN4_BRAFL Putative uncharacterized protein OS=Branc...    34   3.2  
tr|B6JZE7|B6JZE7_SCHJP Predicted protein OS=Schizosaccharomyces ...    34   3.2  
tr|Q4UV43|Q4UV43_XANC8 Putative uncharacterized protein OS=Xanth...    34   4.2  
tr|Q28S75|Q28S75_JANSC Putative uncharacterized protein OS=Janna...    34   4.2  
tr|Q28QT8|Q28QT8_JANSC Putative uncharacterized protein OS=Janna...    34   4.2  
tr|B0RTR4|B0RTR4_XANCB Putative uncharacterized protein OS=Xanth...    34   4.2  
tr|B6XUK0|B6XUK0_9BIFI Putative uncharacterized protein OS=Bifid...    34   4.2  
tr|A1A2J4|A1A2J4_BIFAA Phosphomethylpyrimidine kinase OS=Bifidob...    33   5.5  
tr|A7A8T6|A7A8T6_BIFAD Putative uncharacterized protein OS=Bifid...    33   5.5  
tr|B1S732|B1S732_9BIFI Putative uncharacterized protein OS=Bifid...    33   7.1  
tr|B0ML55|B0ML55_9FIRM Putative uncharacterized protein OS=Eubac...    33   7.1  
tr|B3NJS6|B3NJS6_DROER GG20897 OS=Drosophila erecta GN=GG20897 P...    33   7.1  
tr|A4IBY9|A4IBY9_LEIIN Putative uncharacterized protein OS=Leish...    33   7.1  
tr|Q5JXY1|Q5JXY1_HUMAN ATPase type 13A2 (ATPase type 13A2, isofo...    33   7.1  

>tr|B6PYN4|B6PYN4_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_133371 PE=4 SV=1
          Length = 432

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
 Frame = +2

Query: 110 LNTSFKAYIFG-HTASASVPTKPCYDETSLNATP-TDLLQATLDASSNPISKLDLFDVYI 283
           L+T+F +++    +A  S+P+   + +   +  P + +L  T  +S  P S   L  +  
Sbjct: 169 LSTTFTSFLCPPSSAPLSLPSFVPHPQHHFHFLPLSPILSTTFTSSLCPPSSAPL-SLPS 227

Query: 284 VVPLSPEHHFHSLPVESLFYTDSQAAATPLSCFPLTL 394
            VP  P+HHFH LP+  +  T   ++  P S  PL+L
Sbjct: 228 FVP-HPQHHFHFLPLSPILSTTFTSSLCPPSSAPLSL 263



 Score = 32.7 bits (73), Expect = 9.3
 Identities = 23/78 (29%), Positives = 35/78 (44%)
 Frame = +2

Query: 161 VPTKPCYDETSLNATPTDLLQATLDASSNPISKLDLFDVYIVVPLSPEHHFHSLPVESLF 340
           +P  P    T  +   + +L  T  +   P S   L  +   VP  P+HHFH LP+  + 
Sbjct: 150 LPLSPILSTTFTSFLCSPILSTTFTSFLCPPSSAPL-SLPSFVP-HPQHHFHFLPLSPIL 207

Query: 341 YTDSQAAATPLSCFPLTL 394
            T   ++  P S  PL+L
Sbjct: 208 STTFTSSLCPPSSAPLSL 225


>tr|B6JZE7|B6JZE7_SCHJP Predicted protein OS=Schizosaccharomyces
            japonicus yFS275 GN=SJAG_01985 PE=4 SV=1
          Length = 1678

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
 Frame = +2

Query: 149  ASASVPTKPCYDETSLNATPTDLLQATLDASSNPISKLDLFDVYIV-VPLSPEHHFHSLP 325
            A++SVP       +S+ AT   +  A ++ SS P+S + +  + I   P S  +   S+P
Sbjct: 1094 ANSSVPVSSVPVSSSVPATSVPVSSAPVN-SSVPVSSVPVTSIPISSAPASSVYANSSVP 1152

Query: 326  VESLFYTDSQAAATPLSCFPLT----LTNAQALRAPGKSLLPWISI 451
            V S+  T    ++ P+S  P++    +++A    AP  S +P  S+
Sbjct: 1153 VSSVPATSVPVSSAPVSSIPVSSSAPVSSAPVSSAPSNSSVPVSSV 1198


>tr|Q4UV43|Q4UV43_XANC8 Putative uncharacterized protein
           OS=Xanthomonas campestris pv. campestris (strain 8004)
           GN=XC_2019 PE=4 SV=1
          Length = 460

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +2

Query: 179 YDETSLNATPTDLLQATLDASSNPISKLDLFDVYIVVPLSPEHHFHS-LPVESLFYTDSQ 355
           Y +  + ATP ++        +N  S LD  + ++ +PL   H  H+ LPV+     DS 
Sbjct: 183 YGQVKVYATPQEIATLEQAGYANTTSVLDARNPFVAIPLGDSHRIHNFLPVDGSGKPDSS 242

Query: 356 AAATP 370
               P
Sbjct: 243 VLENP 247


>tr|Q28S75|Q28S75_JANSC Putative uncharacterized protein
           OS=Jannaschia sp. (strain CCS1) GN=Jann_1520 PE=4 SV=1
          Length = 309

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 43/146 (29%), Positives = 59/146 (40%), Gaps = 5/146 (3%)
 Frame = +2

Query: 14  LGASFYAANSVPPLKSVAAKDDAATIEVFLAFLNT-----SFKAYIFGHTASASVPTKPC 178
           + +SFY A    P+  VAA +   TI + L  L T     +F   IFG      VP+   
Sbjct: 100 MNSSFYLALDRLPIALVAAIEFVGTIGIALWGLRTGRNYLAFAVAIFGVALLIDVPSLLA 159

Query: 179 YDETSLNATPTDLLQATLDASSNPISKLDLFDVYIVVPLSPEHHFHSLPVESLFYTDSQA 358
            D  +L +    L  A L+ S        LF +Y+++         S  VE L      A
Sbjct: 160 ADGEALTSDLLGLFWAVLNGS--------LFVLYVILGHKISEGGASGGVERL-----GA 206

Query: 359 AATPLSCFPLTLTNAQALRAPGKSLL 436
           A T    F + +   QAL A G  LL
Sbjct: 207 AMTAAFIFVMPIGFLQALEAFGAPLL 232


>tr|Q28QT8|Q28QT8_JANSC Putative uncharacterized protein
           OS=Jannaschia sp. (strain CCS1) GN=Jann_2007 PE=4 SV=1
          Length = 289

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 43/146 (29%), Positives = 59/146 (40%), Gaps = 5/146 (3%)
 Frame = +2

Query: 14  LGASFYAANSVPPLKSVAAKDDAATIEVFLAFLNT-----SFKAYIFGHTASASVPTKPC 178
           + +SFY A    P+  VAA +   TI + L  L T     +F   IFG      VP+   
Sbjct: 80  MNSSFYLALDRLPIALVAAIEFVGTIGIALWGLRTGRNYLAFAVAIFGVALLIDVPSLLA 139

Query: 179 YDETSLNATPTDLLQATLDASSNPISKLDLFDVYIVVPLSPEHHFHSLPVESLFYTDSQA 358
            D  +L +    L  A L+ S        LF +Y+++         S  VE L      A
Sbjct: 140 ADGEALTSDLLGLFWAVLNGS--------LFVLYVILGHKISEGGASGGVERL-----GA 186

Query: 359 AATPLSCFPLTLTNAQALRAPGKSLL 436
           A T    F + +   QAL A G  LL
Sbjct: 187 AMTAAFIFVMPIGFLQALEAFGAPLL 212


>tr|B0RTR4|B0RTR4_XANCB Putative uncharacterized protein
           OS=Xanthomonas campestris pv. campestris (strain B100)
           GN=xcc-b100_2468 PE=4 SV=1
          Length = 460

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +2

Query: 179 YDETSLNATPTDLLQATLDASSNPISKLDLFDVYIVVPLSPEHHFHS-LPVESLFYTDSQ 355
           Y +  + ATP ++        +N  S LD  + ++ +PL   H  H+ LPV+     DS 
Sbjct: 183 YGQVKVYATPQEIATLEQAGYANTTSVLDARNPFVAIPLGDSHRIHNFLPVDGSGKPDSS 242

Query: 356 AAATP 370
               P
Sbjct: 243 VLENP 247


>tr|B6XUK0|B6XUK0_9BIFI Putative uncharacterized protein
           OS=Bifidobacterium catenulatum DSM 16992 GN=BIFCAT_00414
           PE=4 SV=1
          Length = 280

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 20/67 (29%), Positives = 35/67 (52%)
 Frame = +2

Query: 38  NSVPPLKSVAAKDDAATIEVFLAFLNTSFKAYIFGHTASASVPTKPCYDETSLNATPTDL 217
           +++PP+ S+A  D +    +  A L T     +FG TA A++  +     T +  TP ++
Sbjct: 3   STLPPVLSIAGSDSSGGAGI-QADLKTMLANGVFGMTAIAALTAQNTTGVTMVTNTPVEM 61

Query: 218 LQATLDA 238
           L A +DA
Sbjct: 62  LAAQIDA 68


>tr|A1A2J4|A1A2J4_BIFAA Phosphomethylpyrimidine kinase
           OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM
           20083) GN=thiD PE=4 SV=1
          Length = 280

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 20/67 (29%), Positives = 35/67 (52%)
 Frame = +2

Query: 38  NSVPPLKSVAAKDDAATIEVFLAFLNTSFKAYIFGHTASASVPTKPCYDETSLNATPTDL 217
           +++PP+ S+A  D +    +  A L T     +FG TA A++  +     T +  TP ++
Sbjct: 3   STLPPVLSIAGSDSSGGAGI-QADLKTMLANGVFGMTAIAALTAQNTTGVTMVTNTPPEM 61

Query: 218 LQATLDA 238
           L A +DA
Sbjct: 62  LAAQIDA 68


>tr|A7A8T6|A7A8T6_BIFAD Putative uncharacterized protein
           OS=Bifidobacterium adolescentis L2-32 GN=BIFADO_02278
           PE=4 SV=1
          Length = 280

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 20/67 (29%), Positives = 35/67 (52%)
 Frame = +2

Query: 38  NSVPPLKSVAAKDDAATIEVFLAFLNTSFKAYIFGHTASASVPTKPCYDETSLNATPTDL 217
           +++PP+ S+A  D +    +  A L T     +FG TA A++  +     T +  TP ++
Sbjct: 3   STLPPVLSIAGSDSSGGAGI-QADLKTMLANGVFGMTAIAALTAQNTTGVTMVTNTPPEM 61

Query: 218 LQATLDA 238
           L A +DA
Sbjct: 62  LAAQIDA 68


>tr|B1S732|B1S732_9BIFI Putative uncharacterized protein
           OS=Bifidobacterium dentium ATCC 27678 GN=BIFDEN_01573
           PE=4 SV=1
          Length = 280

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 22/75 (29%), Positives = 36/75 (48%)
 Frame = +2

Query: 38  NSVPPLKSVAAKDDAATIEVFLAFLNTSFKAYIFGHTASASVPTKPCYDETSLNATPTDL 217
           +++PP+ S+A  D +    +  A L T     +FG TA A++  +       +  TP D+
Sbjct: 3   STLPPVLSIAGSDSSGGAGI-QADLKTMLANGVFGMTAIAALTAQNTTGVRMVTNTPPDM 61

Query: 218 LQATLDASSNPISKL 262
           L A +DA    I  L
Sbjct: 62  LAAQIDAVFEDIPPL 76