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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920109
Clone id YMU001_000133_B04
Library
Length 298
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000133_B04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATATGGCATATTGTAAAGCTCCGCGTCCATTGCCTAATCAAGGGCAGACAGCATTCTGGG
GCTACTAGGTTGCCTAACCAGAGGCAGAGCAGCATTCTGCGGCTACAAGATTGCTACATC
CAAAGAAATCTCCTGGTTGAAAGTGAAGATCAGCGAGCGTCCGATTTTCATCTCCACCTC
TCCTGCCCCCACTAGCATGAGTCAGACCTACGTTGCGGATGACATTACGGCCCGGCGATC
TGGATAAACGAAAGCAAAGAGAGTTGGTTCTTTGCGTCTTGCTGAGGAGCAACTTCCT
■■Homology search results ■■ -
sp_hit_id Q09250
Definition sp|Q09250|SAP18_CAEEL Probable histone deacetylase complex subunit SAP18 OS=Caenorhabditis elegans
Align length 39
Score (bit) 33.5
E-value 0.34
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920109|Adiantum capillus-veneris mRNA, clone:
YMU001_000133_B04.
         (298 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q09250|SAP18_CAEEL Probable histone deacetylase complex subun...    33   0.34 
sp|Q67JU6|RL2_SYMTH 50S ribosomal protein L2 OS=Symbiobacterium ...    31   1.7  
sp|Q9VEX9|SAP18_DROME Histone deacetylase complex subunit SAP18 ...    30   3.8  
sp|Q08EA8|TM213_MOUSE Transmembrane protein 213 OS=Mus musculus ...    29   6.5  
sp|P14336|POLG_TBEVW Genome polyprotein OS=Tick-borne encephalit...    29   6.5  
sp|Q01299|POLG_TBEVH Genome polyprotein OS=Tick-borne encephalit...    29   6.5  
sp|Q68SN8|FCRL5_MOUSE Fc receptor-like protein 5 OS=Mus musculus...    29   8.4  

>sp|Q09250|SAP18_CAEEL Probable histone deacetylase complex subunit
           SAP18 OS=Caenorhabditis elegans GN=C16C10.4 PE=2 SV=1
          Length = 166

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = -1

Query: 241 RSPGRNVIRNVGLTHASGGRRGGDENRTLADLHFQPGDF 125
           R   R ++R+VG T  + G RG D+N+TL    F+ GDF
Sbjct: 96  RGSPRYILRDVGNT--TNGERGIDDNKTLQQCKFEVGDF 132


>sp|Q67JU6|RL2_SYMTH 50S ribosomal protein L2 OS=Symbiobacterium
           thermophilum GN=rplB PE=3 SV=1
          Length = 277

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = -1

Query: 286 LSKTQRTNSLCFRLSRSPGRNVIRNVGLTHASGGRRGGDENRTLADLHFQPGDFFG 119
           L+ T+   SL  RL+R  GRNV   + + H     RGG   R    + F+  +F G
Sbjct: 24  LTSTRPEKSLLERLTRKAGRNVYGRITVRH-----RGGGHKRMYRIIDFKRNEFDG 74


>sp|Q9VEX9|SAP18_DROME Histone deacetylase complex subunit SAP18
           OS=Drosophila melanogaster GN=Bin1 PE=1 SV=1
          Length = 150

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -1

Query: 220 IRNVGLTHASGGRRGGDENRTLADLHFQPGDFFGCS 113
           +R +G+T    G++G D+N+TLA   F  GDF   S
Sbjct: 100 MREIGVTCT--GQKGIDDNKTLAQAKFSIGDFLDIS 133


>sp|Q08EA8|TM213_MOUSE Transmembrane protein 213 OS=Mus musculus
           GN=Tmem213 PE=2 SV=2
          Length = 127

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
 Frame = -1

Query: 247 LSRSPGRNVIRNVGLT--HASGGRRGGDENRTLADLHFQPGDFFGCSNL----VAAECCS 86
           L+ +P   ++ ++ LT  H S G      N TL+  H  PG    C+N+    +A+ CC 
Sbjct: 25  LTSAPQAALLFSLVLTSFHLSCGTETSSSNSTLSAHHPDPGTLEQCANVDFCPLASLCCR 84

Query: 85  AS 80
           AS
Sbjct: 85  AS 86


>sp|P14336|POLG_TBEVW Genome polyprotein OS=Tick-borne encephalitis
            virus European subtype (strain Neudoerfl) PE=1 SV=4
          Length = 3414

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 13/17 (76%), Positives = 13/17 (76%)
 Frame = -1

Query: 196  ASGGRRGGDENRTLADL 146
            ASGGRRGG E  TL DL
Sbjct: 2506 ASGGRRGGSEGDTLGDL 2522


>sp|Q01299|POLG_TBEVH Genome polyprotein OS=Tick-borne encephalitis
            virus (strain Hypr) PE=3 SV=1
          Length = 3414

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 13/17 (76%), Positives = 13/17 (76%)
 Frame = -1

Query: 196  ASGGRRGGDENRTLADL 146
            ASGGRRGG E  TL DL
Sbjct: 2506 ASGGRRGGSEGDTLGDL 2522


>sp|Q68SN8|FCRL5_MOUSE Fc receptor-like protein 5 OS=Mus musculus
           GN=Fcrl5 PE=2 SV=2
          Length = 596

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 19/58 (32%), Positives = 25/58 (43%)
 Frame = +1

Query: 85  QSSILRLQDCYIQRNLLVESEDQRASDFHLHLSCPH*HESDLRCG*HYGPAIWINESK 258
           Q S  RLQ C+ +   L+ S   R+S+FH+                   PAIW  ESK
Sbjct: 235 QKSDARLQFCFFRNLQLLGSGCSRSSEFHI-------------------PAIWTEESK 273
tr_hit_id A9SE28
Definition tr|A9SE28|A9SE28_PHYPA Sin3 complex component OS=Physcomitrella patens subsp. patens
Align length 36
Score (bit) 49.3
E-value 5.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920109|Adiantum capillus-veneris mRNA, clone:
YMU001_000133_B04.
         (298 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SE28|A9SE28_PHYPA Sin3 complex component OS=Physcomitrella ...    49   5e-06
tr|A9NPZ0|A9NPZ0_PICSI Putative uncharacterized protein OS=Picea...    43   5e-05
tr|A8J1N7|A8J1N7_CHLRE Sin3 complex component (Fragment) OS=Chla...    42   0.020
tr|B6SJC7|B6SJC7_MAIZE Histone deacetylase complex subunit SAP18...    37   0.097
tr|B4FIB4|B4FIB4_MAIZE Histone deacetylase complex subunit SAP18...    37   0.097
tr|Q6ZH90|Q6ZH90_ORYSJ Os02g0122000 protein OS=Oryza sativa subs...    35   0.35 
tr|A2X0A2|A2X0A2_ORYSI Putative uncharacterized protein OS=Oryza...    35   0.35 
tr|B6TJN9|B6TJN9_MAIZE Histone deacetylase complex subunit SAP18...    33   0.98 
tr|A8XXA8|A8XXA8_CAEBR Putative uncharacterized protein OS=Caeno...    35   1.4  
tr|Q90681|Q90681_CHICK Cation-independent mannose-6-phosphate re...    35   2.4  
tr|A8Q2P3|A8Q2P3_BRUMA Probable Sin3 associated polypeptide p18,...    34   3.1  
tr|B3MST4|B3MST4_DROAN GF23003 OS=Drosophila ananassae GN=GF2300...    33   5.4  
tr|Q38YB8|Q38YB8_LACSS 2-amino-3-ketobutyrate coenzyme A ligase ...    33   9.2  

>tr|A9SE28|A9SE28_PHYPA Sin3 complex component OS=Physcomitrella
           patens subsp. patens GN=HCP1501 PE=4 SV=1
          Length = 137

 Score = 49.3 bits (116), Expect(2) = 5e-06
 Identities = 22/36 (61%), Positives = 28/36 (77%)
 Frame = -1

Query: 232 GRNVIRNVGLTHASGGRRGGDENRTLADLHFQPGDF 125
           GRNVIR VG+TH++   R GD+ R+LA+L FQ GDF
Sbjct: 95  GRNVIRTVGMTHSTPSARRGDDFRSLAELQFQTGDF 130



 Score = 24.3 bits (51), Expect(2) = 5e-06
 Identities = 11/18 (61%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
 Frame = -2

Query: 285 SARRKEPTL-FAFVYPDR 235
           +AR+++  L FAFVYPDR
Sbjct: 76  AARKRDARLSFAFVYPDR 93


>tr|A9NPZ0|A9NPZ0_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 150

 Score = 42.7 bits (99), Expect(2) = 5e-05
 Identities = 22/37 (59%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = -1

Query: 232 GRNVIRNVGLTHASGGRRGGDE-NRTLADLHFQPGDF 125
           GRNV+R VG+T+A    R  DE N+ LADL FQ GDF
Sbjct: 107 GRNVVRQVGVTYAYPNARRPDEGNKALADLSFQTGDF 143



 Score = 27.3 bits (59), Expect(2) = 5e-05
 Identities = 13/19 (68%), Positives = 16/19 (84%), Gaps = 1/19 (5%)
 Frame = -2

Query: 285 SARRKEPTL-FAFVYPDRR 232
           +ARR++  L FAFVYPDRR
Sbjct: 88  AARRRDAKLSFAFVYPDRR 106


>tr|A8J1N7|A8J1N7_CHLRE Sin3 complex component (Fragment)
           OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_104302 PE=4
           SV=1
          Length = 136

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 22/50 (44%), Positives = 29/50 (58%)
 Frame = -1

Query: 262 SLCFRLSRSPGRNVIRNVGLTHASGGRRGGDENRTLADLHFQPGDFFGCS 113
           S  F      GRNV+R VG+ HA+  R G D+ +TL  L+FQ GD+   S
Sbjct: 87  SFAFVYPDRKGRNVMRQVGVVHAT--RPGEDDTKTLRSLNFQTGDYLDVS 134


>tr|B6SJC7|B6SJC7_MAIZE Histone deacetylase complex subunit SAP18
           OS=Zea mays PE=2 SV=1
          Length = 152

 Score = 37.0 bits (84), Expect(2) = 0.097
 Identities = 22/46 (47%), Positives = 27/46 (58%)
 Frame = -1

Query: 262 SLCFRLSRSPGRNVIRNVGLTHASGGRRGGDENRTLADLHFQPGDF 125
           S  F      GR V+R VG T A G  RG D+ +TLA+L FQ GD+
Sbjct: 102 SFAFVYPDKNGRFVVRQVGSTFAYGHGRG-DDAKTLAELGFQIGDY 146



 Score = 21.9 bits (45), Expect(2) = 0.097
 Identities = 10/17 (58%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
 Frame = -2

Query: 282 ARRKEPTL-FAFVYPDR 235
           AR++   L FAFVYPD+
Sbjct: 94  ARKRNARLSFAFVYPDK 110


>tr|B4FIB4|B4FIB4_MAIZE Histone deacetylase complex subunit SAP18
           OS=Zea mays PE=2 SV=1
          Length = 152

 Score = 37.0 bits (84), Expect(2) = 0.097
 Identities = 22/46 (47%), Positives = 27/46 (58%)
 Frame = -1

Query: 262 SLCFRLSRSPGRNVIRNVGLTHASGGRRGGDENRTLADLHFQPGDF 125
           S  F      GR V+R VG T A G  RG D+ +TLA+L FQ GD+
Sbjct: 102 SFAFVYPDKNGRFVVRQVGSTFAYGHGRG-DDAKTLAELGFQIGDY 146



 Score = 21.9 bits (45), Expect(2) = 0.097
 Identities = 10/17 (58%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
 Frame = -2

Query: 282 ARRKEPTL-FAFVYPDR 235
           AR++   L FAFVYPD+
Sbjct: 94  ARKRNARLSFAFVYPDK 110


>tr|Q6ZH90|Q6ZH90_ORYSJ Os02g0122000 protein OS=Oryza sativa subsp.
           japonica GN=OJ1020_C02.26 PE=2 SV=1
          Length = 152

 Score = 34.7 bits (78), Expect(2) = 0.35
 Identities = 20/46 (43%), Positives = 27/46 (58%)
 Frame = -1

Query: 262 SLCFRLSRSPGRNVIRNVGLTHASGGRRGGDENRTLADLHFQPGDF 125
           S  F      GR V++ VG T + G  RG D+ +TLA+L FQ GD+
Sbjct: 102 SFAFVYPDKHGRFVVKEVGSTFSYGHGRG-DDAKTLAELGFQIGDY 146



 Score = 22.3 bits (46), Expect(2) = 0.35
 Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = -2

Query: 285 SARRKEPTL-FAFVYPDR 235
           +AR++   L FAFVYPD+
Sbjct: 93  AARKRNARLSFAFVYPDK 110


>tr|A2X0A2|A2X0A2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_05642 PE=4 SV=1
          Length = 152

 Score = 34.7 bits (78), Expect(2) = 0.35
 Identities = 20/46 (43%), Positives = 27/46 (58%)
 Frame = -1

Query: 262 SLCFRLSRSPGRNVIRNVGLTHASGGRRGGDENRTLADLHFQPGDF 125
           S  F      GR V++ VG T + G  RG D+ +TLA+L FQ GD+
Sbjct: 102 SFAFVYPDKHGRFVVKEVGSTFSYGHGRG-DDAKTLAELGFQIGDY 146



 Score = 22.3 bits (46), Expect(2) = 0.35
 Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = -2

Query: 285 SARRKEPTL-FAFVYPDR 235
           +AR++   L FAFVYPD+
Sbjct: 93  AARKRNARLSFAFVYPDK 110


>tr|B6TJN9|B6TJN9_MAIZE Histone deacetylase complex subunit SAP18
           OS=Zea mays PE=2 SV=1
          Length = 152

 Score = 33.5 bits (75), Expect(2) = 0.98
 Identities = 21/46 (45%), Positives = 26/46 (56%)
 Frame = -1

Query: 262 SLCFRLSRSPGRNVIRNVGLTHASGGRRGGDENRTLADLHFQPGDF 125
           S  F      GR V+R VG T A    RG D+ +TLA+L FQ GD+
Sbjct: 102 SFAFVYPDKNGRFVVRQVGSTFAYCHGRG-DDAKTLAELGFQIGDY 146



 Score = 21.9 bits (45), Expect(2) = 0.98
 Identities = 10/17 (58%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
 Frame = -2

Query: 282 ARRKEPTL-FAFVYPDR 235
           AR++   L FAFVYPD+
Sbjct: 94  ARKRNARLSFAFVYPDK 110


>tr|A8XXA8|A8XXA8_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG20155 PE=4 SV=1
          Length = 170

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = -1

Query: 241 RSPGRNVIRNVGLTHASGGRRGGDENRTLADLHFQPGDF 125
           RS  R ++R +G T    G+RG D+++TL    F+PGDF
Sbjct: 97  RSSPRYLLREIGSTQ--NGQRGLDDSKTLQQCKFEPGDF 133


>tr|Q90681|Q90681_CHICK Cation-independent mannose-6-phosphate
           receptor OS=Gallus gallus PE=2 SV=1
          Length = 2470

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = -1

Query: 289 LLSKTQRTNSLCFRLSRSPGRNVIRNVGLTHASGGRRGGDEN-RTLADLHFQPGDFFGCS 113
           + S  ++ NS       SP + V  N+ LT+++GG  GG++  +T+  L  +PGD     
Sbjct: 526 ICSVDKKNNSKNLGTFVSPPKKVGENIQLTYSNGGSCGGNKKIKTVITLICRPGDLESAP 585

Query: 112 NLVAAECCS 86
            L++   CS
Sbjct: 586 ILISEGVCS 594