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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920112
Clone id YMU001_000133_B08
Library
Length 364
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000133_B08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTGTCGTGTCTATGACGCAAACACCAACACGAATTTTAGAGCTATTCTCACTACAGAGAA
ACTCAATGCCTTCCACATTATTTCCAACACACTTGATTGTCCATGGTAAAATGAACTGCA
AACTAGAAGTGCCATTCTTTAGTGCAATGATCCACTGCACATATCCCCTAGTGATCTCAG
GAATTGGCTCTTTCTCCTTTCCTTTTTGTAGTAGGAGATCTAGCCATTGCATACAACTCG
TGAAGAGCAGATTTGTAAATCTCATTTGTAATGTTATAATGATACTTACATTTATCCCAT
GAAGTAACTGCTATTTCTGATGGATATATCTCTTTGAATGCCATCAACATTTGAGTCTCA
AAAA
■■Homology search results ■■ -
sp_hit_id Q00749
Definition sp|Q00749|MSME_STRMU Multiple sugar-binding protein OS=Streptococcus mutans
Align length 34
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920112|Adiantum capillus-veneris mRNA, clone:
YMU001_000133_B08.
         (364 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q00749|MSME_STRMU Multiple sugar-binding protein OS=Streptoco...    31   1.7  
sp|Q17VN6|RPOBC_HELAH Bifunctional DNA-directed RNA polymerase s...    31   2.2  
sp|Q60767|LY75_MOUSE Lymphocyte antigen 75 OS=Mus musculus GN=Ly...    29   8.4  

>sp|Q00749|MSME_STRMU Multiple sugar-binding protein
           OS=Streptococcus mutans GN=msmE PE=2 SV=2
          Length = 420

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 329 IYPSEIAVTSWDKCKYHYNITNEIYKSALHELYA 228
           IYP  +    W K  Y YN+T + Y + L   YA
Sbjct: 94  IYPQNMDFQEWSKAGYFYNMTGKAYLNHLKNHYA 127


>sp|Q17VN6|RPOBC_HELAH Bifunctional DNA-directed RNA polymerase
            subunit beta-beta' OS=Helicobacter acinonychis (strain
            Sheeba) GN=rpoBC PE=3 SV=1
          Length = 2890

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
 Frame = -1

Query: 217  LLLQKGKEKEPIP---EITRGYVQWIIALKNGTSSLQFIL-------PWTIKCVGNNVEG 68
            +L+ + K K P      I   Y + I+++KNG    +F+L       P  +  VG  +EG
Sbjct: 2348 ILVVEPKIKAPFDGELSIETVYEEVIVSVKNGEQEAKFVLRRSDIVKPSELAGVGGKIEG 2407

Query: 67   IEFLCSENSSKIRVGVCVID 8
              +L   N  KI  G  + D
Sbjct: 2408 KVYLHYANGHKIHKGGSIAD 2427


>sp|Q60767|LY75_MOUSE Lymphocyte antigen 75 OS=Mus musculus GN=Ly75
           PE=1 SV=1
          Length = 1723

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -3

Query: 329 IYPSEIAVTSWDKCKYHYNITNEIYKSALHELYAMARSPTT---KRKGERAN 183
           ++  +  V  W KC++H   T   Y+ AL + YA+A + T+   K+ G   N
Sbjct: 97  MFSCDSTVMLWWKCEHHSLYTAAQYRLALKDGYAVANTNTSDVWKKGGSEEN 148
tr_hit_id B2V8B0
Definition tr|B2V8B0|B2V8B0_SULSY Peptidase M16 domain protein OS=Sulfurihydrogenibium sp. (strain YO3AOP1)
Align length 34
Score (bit) 34.7
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920112|Adiantum capillus-veneris mRNA, clone:
YMU001_000133_B08.
         (364 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B2V8B0|B2V8B0_SULSY Peptidase M16 domain protein OS=Sulfurihy...    35   2.5  
tr|Q3AG02|Q3AG02_CARHZ Anion transporter family protein OS=Carbo...    33   5.5  
tr|A8XP90|A8XP90_CAEBR Putative uncharacterized protein OS=Caeno...    33   7.1  
tr|Q1MBE9|Q1MBE9_RHIL3 Putative solute-binding component of ABC ...    33   9.3  
tr|B0J2K2|B0J2K2_RHILT Extracellular solute-binding protein fami...    33   9.3  

>tr|B2V8B0|B2V8B0_SULSY Peptidase M16 domain protein
           OS=Sulfurihydrogenibium sp. (strain YO3AOP1)
           GN=SYO3AOP1_0543 PE=3 SV=1
          Length = 439

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -3

Query: 311 AVTSWDKCKYHYNITNEIYKSALHELYAMARSPT 210
           A TS+D   YH  I +E +K AL+ LY M   PT
Sbjct: 102 AATSFDFTYYHIEIASEFWKDALYYLYYMTTEPT 135


>tr|Q3AG02|Q3AG02_CARHZ Anion transporter family protein
           OS=Carboxydothermus hydrogenoformans (strain Z-2901 /
           DSM 6008) GN=CHY_0060 PE=4 SV=1
          Length = 466

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 22/77 (28%), Positives = 35/77 (45%)
 Frame = -1

Query: 289 VSIIITLQMRFTNLLFTSCMQWLDLLLQKGKEKEPIPEITRGYVQWIIALKNGTSSLQFI 110
           +   I   +  + +L    + W D+L +KG         T  ++  ++AL    S L FI
Sbjct: 286 IDATIVAMLGVSAMLVAKVIDWKDVLAEKGAWD------TLVWMGVLVALAGNLSELGFI 339

Query: 109 LPWTIKCVGNNVEGIEF 59
            PW  K VGN + GI +
Sbjct: 340 -PWFAKNVGNMISGISW 355


>tr|A8XP90|A8XP90_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG16659 PE=4 SV=1
          Length = 465

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
 Frame = -1

Query: 331 RYIHQK*QLLHGINVSIIITLQMRFTNLLFTSCMQWLDLLLQKGKEKEPIPEITRGYVQW 152
           RYI      L  +N+S    +Q R   ++ TSC+  LD L+ +G   E + E   G V+ 
Sbjct: 193 RYIGDGCPSLTYLNISWCDAVQDRGVQVIITSCVS-LDTLILRG--CEGLTENVFGPVET 249

Query: 151 IIALKNGTSSLQF--ILPWTIKCVGNNVEGIEFLCSENSSKI 32
            ++     + LQ   +   T++ + N  + IE+LC  N ++I
Sbjct: 250 QMSSLKKLNMLQCFQVTDTTVRNIANGAKLIEYLCLSNCNQI 291


>tr|Q1MBE9|Q1MBE9_RHIL3 Putative solute-binding component of ABC
           transporter OS=Rhizobium leguminosarum bv. viciae
           (strain 3841) GN=RL4245 PE=3 SV=1
          Length = 430

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
 Frame = -1

Query: 250 LLFTSCMQWLDLLLQKGKEKEPIPEITRGYVQWIIALKNGTSSLQFIL-----PWTIKCV 86
           L  T+C  W  +     + K PIP++T+    W +    G SS Q++L     PW +   
Sbjct: 265 LAATTCGSWCYIFDWGRESKNPIPDVTKVVGTWTVP---GQSSGQYVLANLAAPWAVNSK 321

Query: 85  GNNVE 71
             N E
Sbjct: 322 SANTE 326


>tr|B0J2K2|B0J2K2_RHILT Extracellular solute-binding protein family
           1 OS=Rhizobium leguminosarum bv. trifolii WSM1325
           GN=RlegDRAFT_7504 PE=3 SV=1
          Length = 439

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
 Frame = -1

Query: 250 LLFTSCMQWLDLLLQKGKEKEPIPEITRGYVQWIIALKNGTSSLQFIL-----PWTIKCV 86
           L  T+C  W  +     + K PIP++T+    W +    G SS Q++L     PW +   
Sbjct: 274 LAATTCGSWCYIFDWGRESKNPIPDVTKVVGTWTVP---GQSSGQYVLANLAAPWAVNSK 330

Query: 85  GNNVE 71
             N E
Sbjct: 331 SANTE 335