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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920114
Clone id YMU001_000133_B10
Library
Length 578
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000133_B10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AACTGGAAGAATTCGCGGCCGCGAATATTGGGAGGTCTATGTGAGCAACAATATTCGAAA
CTGGAATCCATGAAAGTCCATCCCCGTGCGGATGCATGCAGTTTATACAGATTTCCACCA
ACAGATGCGGGCTTGCGATATGCACCAGTTGCACATACTGTTCAAACAGTTCCTTCCCAG
TTCTCACCTGCATACTTCCCTCCATGCCCATCAGTGTAAGAATCGACAAGACTTTATCCT
CCTCGTGAGTCGCAACCCTGCCTTTCATCCCATCTAGGAAGAAGCCTTCCCCTCTACCAA
TGTCATGATTTCTCACCACCCTCTGAAGTGCATTCACTCTTTCTACCCATGACCCATCTC
TTCCATATGTTGGCAGACTTATACTTTGCAACATTGCCTGGTTCCCAGCAGGCAAGAATA
CATGGTTTATGTAGTCATCTTTCGAATAAATGATAATTCGCCGCATTTATCGCATGGCAC
ATCAATGTCAGACCCTATCATATCATTCCCTACTTCAGCATTTGGATCAAAAAATTGGAG
GTTGTGCAGAACGCTAAGCAATTTCTGCTCCAACTCAG
■■Homology search results ■■ -
sp_hit_id Q8R5A3
Definition sp|Q8R5A3|AB1IP_MOUSE Amyloid beta A4 precursor protein-binding family B member 1-interacting protein OS=Mus musculus
Align length 80
Score (bit) 36.2
E-value 0.11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920114|Adiantum capillus-veneris mRNA, clone:
YMU001_000133_B10.
         (551 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8R5A3|AB1IP_MOUSE Amyloid beta A4 precursor protein-binding ...    36   0.11 
sp|Q9W758|CTBP2_XENLA C-terminal-binding protein 2 OS=Xenopus la...    34   0.54 
sp|Q9HBL0|TENS1_HUMAN Tensin-1 OS=Homo sapiens GN=TNS1 PE=1 SV=2       32   2.7  
sp|Q8WXC7|YB054_HUMAN Putative uncharacterized protein LOC643905...    30   6.0  
sp|Q6CEV2|SEC16_YARLI COPII coat assembly protein SEC16 OS=Yarro...    30   6.0  
sp|P54362|AP3D_DROME AP-3 complex subunit delta OS=Drosophila me...    30   6.0  
sp|Q6UVJ0|SAS6_HUMAN Spindle assembly abnormal protein 6 homolog...    30   7.8  
sp|A1CEK6|HSE1_ASPCL Class E vacuolar protein-sorting machinery ...    30   7.8  
sp|P50476|HOX3_XENLA Homeobox protein XHOX-3 OS=Xenopus laevis G...    30   7.8  
sp|O54774|AP3D1_MOUSE AP-3 complex subunit delta-1 OS=Mus muscul...    30   7.8  
sp|O14617|AP3D1_HUMAN AP-3 complex subunit delta-1 OS=Homo sapie...    30   7.8  
sp|Q865S1|AP3D1_BOVIN AP-3 complex subunit delta-1 OS=Bos taurus...    30   7.8  

>sp|Q8R5A3|AB1IP_MOUSE Amyloid beta A4 precursor protein-binding
           family B member 1-interacting protein OS=Mus musculus
           GN=Apbb1ip PE=1 SV=2
          Length = 670

 Score = 36.2 bits (82), Expect = 0.11
 Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
 Frame = +1

Query: 88  PPTD--AGLRYAPVAHTVQTVPSQFSPAYFPPCPSV*ESTRLYPPRESQPCLSSHLGRSL 261
           PP +  +GL   P        P  F P   PP P+  E + L PP    PCLS  + +S 
Sbjct: 567 PPEEDNSGLLPPPPPPPYLEEPPDFVPP--PPPPAAVEDSALPPPPPPPPCLSQEITKSS 624

Query: 262 PLYQCHDFSPPSEVHSLFLP 321
           PL       PP    +  LP
Sbjct: 625 PLPPKKPLVPPKRQENQGLP 644


>sp|Q9W758|CTBP2_XENLA C-terminal-binding protein 2 OS=Xenopus
           laevis GN=ctbp2 PE=1 SV=1
          Length = 437

 Score = 33.9 bits (76), Expect = 0.54
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +1

Query: 10  LCEQQYSKLESMKVHPRADACSLYRFPPTDAGLRYAPVAHTVQTVPSQFSPAY--FPPCP 183
           L   Q+S +E   VHP  +  S YRFPP   G+  A     ++ + +   P        P
Sbjct: 360 LAAVQWSGMEQAAVHPELNGASSYRFPPGVVGVTSAGHPSAIEGLVASSHPLIPSVSHTP 419

Query: 184 SV*ESTRLYPPRE 222
           S  ++T+  P RE
Sbjct: 420 SPGQTTKPDPDRE 432


>sp|Q9HBL0|TENS1_HUMAN Tensin-1 OS=Homo sapiens GN=TNS1 PE=1 SV=2
          Length = 1735

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 26/81 (32%), Positives = 31/81 (38%)
 Frame = +1

Query: 88  PPTDAGLRYAPVAHTVQTVPSQFSPAYFPPCPSV*ESTRLYPPRESQPCLSSHLGRSLPL 267
           P T +   Y P  H++ T P     A     P      R Y P + QPCL+       P 
Sbjct: 758 PLTQSRSGYIPSGHSLGT-PEPAPRASLESVPP----GRSYSPYDYQPCLAG------PN 806

Query: 268 YQCHDFSPPSEVHSLFLPMTH 330
              H  SP S     FLP TH
Sbjct: 807 QDFHSKSPASSSLPAFLPTTH 827


>sp|Q8WXC7|YB054_HUMAN Putative uncharacterized protein LOC643905
           OS=Homo sapiens PE=5 SV=1
          Length = 389

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 30/102 (29%), Positives = 40/102 (39%), Gaps = 11/102 (10%)
 Frame = +1

Query: 43  MKVHPRADACSLYRFPPTDAGLRYAPVAHTVQTVPSQFSPAYFPPCPSV*ESTRLYP--- 213
           M +HPR     L+   P+   L   P  H   + P    P  F   PS   S  L+P   
Sbjct: 48  MALHPR-----LFTHGPSSTALHPCPFTHG--SSPMSLHPRLFTHSPS---SMPLHPRPF 97

Query: 214 -----PRESQPCLSSHLGRSLPLYQ---CHDFSPPSEVHSLF 315
                P   +PCL +H   S+PL+     H  SP +    LF
Sbjct: 98  VHASSPTALRPCLFTHGPSSMPLHPRPFVHASSPTALPPCLF 139


>sp|Q6CEV2|SEC16_YARLI COPII coat assembly protein SEC16 OS=Yarrowia
            lipolytica GN=SEC16 PE=3 SV=1
          Length = 2183

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +1

Query: 115  APVAHTVQTVPSQFSPAYFPPCPSV*ESTRLYPPRESQPCLSSHLGRSLP 264
            +P AH    VP + S  Y PP P+V       PP+ S P     +  S P
Sbjct: 922  SPYAHPPAAVPPKTSSPYAPPPPAV-------PPKSSSPYAPPPVSHSAP 964


>sp|P54362|AP3D_DROME AP-3 complex subunit delta OS=Drosophila
           melanogaster GN=g PE=1 SV=4
          Length = 1034

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 205 VLSILTLMGMEGSMQVRTGKELFEQYVQLVHIASPHLLVEICIN 74
           ++ I+ L G    ++ R GK+L E    L+H  S   L+  CIN
Sbjct: 239 LIKIIKLFGALTPLEPRLGKKLIEPLTNLIHSTSAMSLLYECIN 282


>sp|Q6UVJ0|SAS6_HUMAN Spindle assembly abnormal protein 6 homolog
           OS=Homo sapiens GN=SASS6 PE=1 SV=1
          Length = 657

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 525 VLHNLQFFDPNAEVGNDMIGSDIDVPC 445
           V  NLQF  PNA +G+   G+ I +PC
Sbjct: 559 VQFNLQFTKPNASLGDVQSGATISMPC 585


>sp|A1CEK6|HSE1_ASPCL Class E vacuolar protein-sorting machinery
           protein hse1 OS=Aspergillus clavatus GN=hse1 PE=3 SV=1
          Length = 599

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 28/101 (27%), Positives = 35/101 (34%)
 Frame = +1

Query: 28  SKLESMKVHPRADACSLYRFPPTDAGLRYAPVAHTVQTVPSQFSPAYFPPCPSV*ESTRL 207
           S LE+   HP     +    PP        P  +  Q  P      YF P P   + T +
Sbjct: 363 SLLEASMSHPPQPQYARPGQPPYGYPAPTGPHGYP-QGAPQPDPQRYFSPRPQ--DQTHM 419

Query: 208 YPPRESQPCLSSHLGRSLPLYQCHDFSPPSEVHSLFLPMTH 330
           YPP    P        + P  Q     PP+E    F PM H
Sbjct: 420 YPPTSQSPDPRGRTPPAGPTMQQQQQQPPAE---SFQPMHH 457


>sp|P50476|HOX3_XENLA Homeobox protein XHOX-3 OS=Xenopus laevis
           GN=xhox3 PE=2 SV=1
          Length = 388

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
 Frame = +3

Query: 36  GIHESPSPCGCMQFIQISTNRCGLAICTSCTYCSNS----SFPVLTCILPSMPISVRIDK 203
           G+    SPC C+  +  STN  G     S   CS++    SF   T  + S   SV +D+
Sbjct: 321 GLGSGGSPCSCLACLSTSTNGLGQRAAASDFTCSSTSRSDSFLTFTPSILSKSSSVSLDQ 380


>sp|O54774|AP3D1_MOUSE AP-3 complex subunit delta-1 OS=Mus musculus
           GN=Ap3d1 PE=1 SV=1
          Length = 1199

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 205 VLSILTLMGMEGSMQVRTGKELFEQYVQLVHIASPHLLVEICIN 74
           ++ I+ L G    ++ R GK+L E    L+H  S   L+  C+N
Sbjct: 238 LIKIIKLFGALTPLEPRLGKKLIEPLTNLIHSTSAMSLLYECVN 281
tr_hit_id A9T4S0
Definition tr|A9T4S0|A9T4S0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 70
Score (bit) 43.5
E-value 0.007
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920114|Adiantum capillus-veneris mRNA, clone:
YMU001_000133_B10.
         (551 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9T4S0|A9T4S0_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.007
tr|A9T731|A9T731_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.082
tr|B8G7W5|B8G7W5_9CHLR Putative uncharacterized protein OS=Chlor...    38   0.41 
tr|B1AYC9|B1AYC9_MOUSE Amyloid beta (A4) protein-binding, family...    36   1.2  
tr|B1PAK4|B1PAK4_9PEZI RNA polymerase II second largest subunit ...    36   1.2  
tr|Q1E705|Q1E705_COCIM Predicted protein OS=Coccidioides immitis...    35   2.0  
tr|Q0CR72|Q0CR72_ASPTN Putative uncharacterized protein OS=Asper...    35   2.6  
tr|Q5ZMM8|Q5ZMM8_CHICK Putative uncharacterized protein OS=Gallu...    35   3.4  
tr|Q1QZ00|Q1QZ00_CHRSD Heat shock protein DnaJ-like protein OS=C...    35   3.4  
tr|Q7QHR3|Q7QHR3_ANOGA AGAP011314-PA (Fragment) OS=Anopheles gam...    34   4.5  
tr|B0ET60|B0ET60_ENTDI Putative uncharacterized protein OS=Entam...    34   4.5  
tr|Q6IT20|Q6IT20_EDWIC Putative exported protein (Fragment) OS=E...    33   7.7  
tr|Q4G016|Q4G016_RAT Apbb1ip protein (Fragment) OS=Rattus norveg...    33   10.0 
tr|B4LBN8|B4LBN8_DROVI GJ12568 OS=Drosophila virilis GN=GJ12568 ...    33   10.0 

>tr|A9T4S0|A9T4S0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_88065 PE=4 SV=1
          Length = 558

 Score = 43.5 bits (101), Expect = 0.007
 Identities = 24/70 (34%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
 Frame = -2

Query: 232 RVATHEEDKVLSILTLMGMEGSMQVRTGKELFEQYVQLVHIASPH----LLVEICINCMH 65
           R  ++ ED+VL++L ++G+  +  +R+G  L++Q   L  +A P     L+V+ CI+ M+
Sbjct: 274 RSCSYPEDRVLAVLGMLGIGVTTTLRSGLSLYDQIKWLCGVAPPKMRHALIVKNCID-MY 332

Query: 64  PHGDGLSWIP 35
           P   G SW+P
Sbjct: 333 PSMPGSSWMP 342


>tr|A9T731|A9T731_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_168434 PE=4 SV=1
          Length = 724

 Score = 40.0 bits (92), Expect = 0.082
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
 Frame = -2

Query: 241 MKGRVATHEEDKVLSILTLMGMEGSMQVRTGKELFEQYVQLVHI---ASP-----HLLVE 86
           M+     H+ED++LSIL L+ +EG +Q+RTG+ L EQ   +      +SP      LL+ 
Sbjct: 319 MRDCAEQHDEDRLLSILGLLQVEGKVQLRTGRGLEEQIFDVARSLLNSSPSHEHQQLLLL 378

Query: 85  ICINCMHPHG-DGLSWIP 35
           +C    H      +SW P
Sbjct: 379 LCFAQYHGSPVTSMSWAP 396


>tr|B8G7W5|B8G7W5_9CHLR Putative uncharacterized protein
           OS=Chloroflexus aggregans DSM 9485 GN=Cagg_1236 PE=4
           SV=1
          Length = 285

 Score = 37.7 bits (86), Expect = 0.41
 Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 4/126 (3%)
 Frame = +1

Query: 52  HPRADACSLYRFP-PTDAGLRYAPVAHTVQTVPSQFSPAYFPPCPSV*ESTRLYPPRESQ 228
           +P    C+L+ F  P  A +R +P+  T  +V + F+P  +PP  SV         R S+
Sbjct: 179 YPPQRLCALHPFALPPSASVRTSPLCVTPLSVCAHFAPLRYPPSASV---------RTSR 229

Query: 229 PCLSSHLGRSLPLYQCHDFSP---PSEVHSLFLPMTHLFHMLADLYFATLPGSQQARIHG 399
            C       + PL  C  F+P   P  V + F P+ +    L  L    LP        G
Sbjct: 230 LC-------ATPLSVCAHFTPLRYPRGVCAHFAPLRYPPQRLCALRAFALPP------RG 276

Query: 400 LCSHLS 417
           +C+H +
Sbjct: 277 VCAHFA 282


>tr|B1AYC9|B1AYC9_MOUSE Amyloid beta (A4) protein-binding, family B,
           member 1 interacting protein OS=Mus musculus GN=Apbb1ip
           PE=4 SV=1
          Length = 670

 Score = 36.2 bits (82), Expect = 1.2
 Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
 Frame = +1

Query: 88  PPTD--AGLRYAPVAHTVQTVPSQFSPAYFPPCPSV*ESTRLYPPRESQPCLSSHLGRSL 261
           PP +  +GL   P        P  F P   PP P+  E + L PP    PCLS  + +S 
Sbjct: 567 PPEEDNSGLLPPPPPPPYLEEPPDFVPP--PPPPAAVEDSALPPPPPPPPCLSQEITKSS 624

Query: 262 PLYQCHDFSPPSEVHSLFLP 321
           PL       PP    +  LP
Sbjct: 625 PLPPKKPLVPPKRQENQGLP 644


>tr|B1PAK4|B1PAK4_9PEZI RNA polymerase II second largest subunit
           (Fragment) OS=Tricharina praecox GN=RPB2 PE=4 SV=1
          Length = 205

 Score = 36.2 bits (82), Expect = 1.2
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
 Frame = -2

Query: 346 PTYGRDGSWVERVNALQRVVRNHDIGRGEGFFLDGM-----KGRVATHEEDKVLSILTLM 182
           PT+ R G  V     + ++  +HD+  GE F  DG+        V   EE+ ++ ++T  
Sbjct: 92  PTHERRGQLVLTKEHVMQLDEDHDLPPGEKFGWDGLLECGAVEYVDAEEEETIMIVMTPE 151

Query: 181 GMEGSMQVRTGKELFEQ 131
            +E S QV  G EL E+
Sbjct: 152 DLEVSRQVAQGYELAEE 168


>tr|Q1E705|Q1E705_COCIM Predicted protein OS=Coccidioides immitis
           GN=CIMG_01658 PE=4 SV=1
          Length = 1297

 Score = 35.4 bits (80), Expect = 2.0
 Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 8/94 (8%)
 Frame = +1

Query: 157 SPAYFPPCPSV*ESTRLYPPRESQPCLSSHLGRSLPLYQCHDFSPPSE--------VHSL 312
           SP   PP PS    +   PP  +QP    H  R   +Y     + P+         VH+ 
Sbjct: 138 SPPPTPPSPSAYSGSSDSPPSPAQPAGEYHYPRLTNVYSTDYLATPAPTSVTEEFVVHAK 197

Query: 313 FLPMTHLFHMLADLYFATLPGSQQARIHGLCSHL 414
             P  H    +++L  AT P SQ  +++  C H+
Sbjct: 198 ASPEYHAQRPVSNL-DATRPSSQINKLNAFCKHI 230


>tr|Q0CR72|Q0CR72_ASPTN Putative uncharacterized protein
            OS=Aspergillus terreus (strain NIH 2624) GN=ATEG_03812
            PE=4 SV=1
          Length = 1286

 Score = 35.0 bits (79), Expect = 2.6
 Identities = 17/32 (53%), Positives = 19/32 (59%)
 Frame = +2

Query: 446  HGTSMSDPIISFPTSAFGSKNWRLCRTLSNFC 541
            +GTSMS  + SF  S  G K WRL R L N C
Sbjct: 1150 YGTSMSGAVYSF--SILGEKEWRLLRLLQNLC 1179


>tr|Q5ZMM8|Q5ZMM8_CHICK Putative uncharacterized protein OS=Gallus
           gallus GN=RCJMB04_1j12 PE=2 SV=1
          Length = 440

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
 Frame = +1

Query: 10  LCEQQYSKLESMKVHPRADACSLYRFPP-----TDAGLRYAPVAHTV--QTVPSQFSPAY 168
           L   Q+S ++   VHP  +  + YRFPP     T  GL   PV   +    +PS    A 
Sbjct: 360 LLAAQWSGIDPASVHPELNGAAAYRFPPGVVGVTTPGLPEPPVVEGIVAHGIPSVSHSA- 418

Query: 169 FPPCPSV*ESTRLYPPRE 222
            P  PS  E+++L   RE
Sbjct: 419 -PRTPSPGETSKLDADRE 435


>tr|Q1QZ00|Q1QZ00_CHRSD Heat shock protein DnaJ-like protein
           OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC
           BAA-138 / NCIMB 13768) GN=Csal_0951 PE=4 SV=1
          Length = 341

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -2

Query: 280 HDIGRGEGFFLDGMKGRVATHEEDKVLSILTLMGMEGSMQVRTGKELFEQYVQLVH 113
           H+  R EGF  DGM G  +T  ++K    L ++G+ G+ Q    K  + +  Q  H
Sbjct: 252 HERKRHEGFSHDGMCGDRSTAHDEKAQRALAVLGLMGNAQKSEVKRAYRRLAQKYH 307


>tr|Q7QHR3|Q7QHR3_ANOGA AGAP011314-PA (Fragment) OS=Anopheles
           gambiae GN=AGAP011314 PE=4 SV=4
          Length = 488

 Score = 34.3 bits (77), Expect = 4.5
 Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 11/106 (10%)
 Frame = +1

Query: 13  CEQQYSKLE-SMKVHPRADACSLYRFPPTDAGLRYAPVAHTVQ---TVPSQFSPAYFPPC 180
           CE Q  + + + +V    D+C+L   P  ++ L+  PV H V    ++  ++    + P 
Sbjct: 245 CELQLHEYDVATRVEITHDSCALLLRPKNNSLLQVTPVGHHVSVSASIDGEYVSRSYTPV 304

Query: 181 PSV*ESTR-------LYPPRESQPCLSSHLGRSLPLYQCHDFSPPS 297
           P+   ST        L        CLS HL R +PL      S PS
Sbjct: 305 PASCVSTDCPGTFIPLLVKSYQDGCLSKHLTRPVPLGTSLQVSQPS 350