BP920119 |
Clone id |
YMU001_000133_C04 |
Library |
YMU01 |
Length |
499 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000133_C04. |
Accession |
BP920119 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL3888Contig1 |
Sequence |
TTTTTTTTTTTTTTTTTGTTCCATTAAGCCACTCTAATTATAAGTTGCGCTCTAAATGAA TTCGTCATTGCCAAGGAAGTTCGTGACCACCTTTTTTTGCACCCCCGGGGGTGGGGGGGC ATAGCCAGAAAACTTGGAACAATTGCTATATGTATCTTTCTTCTATTTACACAAACAAAC AAAATCTCTGTGCATTTACTCTCAATTCAGACAGAGAGTACTGTTACACTCAACCCTATG TTTGGTTTTTCCTCGTTCAAAGACCGGCAATTAAACTCTGCACACAATCCGATAGTAACA AGTGGCTTCAGTTCATGTTCAAGAACAGCACTCAATAATCCTGCAGTGTCGACCTTCGCC TTAACACTAGTTTGAGGATCCAGCTTATGCAGCCCCCCAATTGTCATCTTCCCAATTTTT TTCTCAGGTTGAAAATCAACGTTAAGAGCCCACGATGTATTTGAGCTAACCTCATGTAGA CAATAGGCATTCACAGTTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9SRH5 |
Definition |
sp|Q9SRH5|VDAC1_ARATH Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana |
Align length |
94 |
Score (bit) |
56.2 |
E-value |
7.0e-08 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q7Y1C6 |
Definition |
tr|Q7Y1C6|Q7Y1C6_PENAM PgPOR29 (Voltage dependent anion channel protein) (Fragment) OS=Pennisetum americanum |
Align length |
66 |
Score (bit) |
62.8 |
E-value |
8.0e-09 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP920119|Adiantum capillus-veneris mRNA, clone: YMU001_000133_C04. (479 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q7Y1C6|Q7Y1C6_PENAM PgPOR29 (Voltage dependent anion channel ... 63 8e-09 tr|Q84P97|Q84P97_ORYSJ Os03g0202200 protein OS=Oryza sativa subs... 59 9e-08 tr|Q10QB6|Q10QB6_ORYSJ Eukaryotic porin family protein, expresse... 59 9e-08 tr|B8AQH5|B8AQH5_ORYSI Putative uncharacterized protein OS=Oryza... 59 9e-08 tr|A3AF72|A3AF72_ORYSJ Putative uncharacterized protein OS=Oryza... 59 9e-08 tr|Q8LA84|Q8LA84_ARATH Putative porin OS=Arabidopsis thaliana PE... 57 6e-07 tr|A6N1E7|A6N1E7_ORYSI Outer mitochondrial membrane protein pori... 57 6e-07 tr|B6SS48|B6SS48_MAIZE Outer mitochondrial membrane protein pori... 55 1e-06 tr|A9TKC4|A9TKC4_PHYPA Predicted protein OS=Physcomitrella paten... 55 2e-06 tr|A9TTQ2|A9TTQ2_PHYPA Predicted protein OS=Physcomitrella paten... 53 7e-06 tr|Q6S739|Q6S739_BRACM Voltage-dependent anion-selective channel... 52 1e-05 tr|Q6QTH2|Q6QTH2_BRARP Voltage-dependent anion-selective channel... 52 1e-05 tr|A7Q2S2|A7Q2S2_VITVI Chromosome chr1 scaffold_46, whole genome... 52 1e-05 tr|Q9SPD9|Q9SPD9_MAIZE Voltage-dependent anion channel protein 1... 51 3e-05 tr|Q5MD14|Q5MD14_BRANA Porin-like protein OS=Brassica napus PE=2... 51 3e-05 tr|B4FT85|B4FT85_MAIZE Isochorismate synthase 1 OS=Zea mays PE=2... 51 3e-05 tr|Q9FJX3|Q9FJX3_ARATH Porin-like protein (At5g67500) OS=Arabido... 51 3e-05 tr|A5BE54|A5BE54_VITVI Putative uncharacterized protein (Chromos... 51 3e-05 tr|A7PLQ4|A7PLQ4_VITVI Chromosome chr7 scaffold_20, whole genome... 50 4e-05 tr|A5AQ65|A5AQ65_VITVI Putative uncharacterized protein OS=Vitis... 50 4e-05 tr|Q9XH72|Q9XH72_PRUAR Porin OS=Prunus armeniaca GN=mPOR PE=2 SV=1 50 6e-05 tr|A9CM21|A9CM21_TOBAC Voltage-dependent anion channel OS=Nicoti... 50 6e-05 tr|Q9SPD8|Q9SPD8_MAIZE Voltage-dependent anion channel protein 1... 50 7e-05 tr|B6TAU9|B6TAU9_MAIZE Outer mitochondrial membrane protein pori... 50 7e-05 tr|A9NRG5|A9NRG5_PICSI Putative uncharacterized protein OS=Picea... 49 1e-04 tr|Q8VXC6|Q8VXC6_ORYSA Voltage-dependent anion channel OS=Oryza ... 49 1e-04 tr|Q7F4F8|Q7F4F8_ORYSJ cDNA clone:006-205-B06, full insert seque... 49 1e-04 tr|A2WRY9|A2WRY9_ORYSI Putative uncharacterized protein OS=Oryza... 49 1e-04 tr|Q41590|Q41590_WHEAT Voltage dependent anion channel (VDAC) (F... 49 2e-04 tr|A9NU89|A9NU89_PICSI Putative uncharacterized protein OS=Picea... 49 2e-04
>tr|Q7Y1C6|Q7Y1C6_PENAM PgPOR29 (Voltage dependent anion channel protein) (Fragment) OS=Pennisetum americanum GN=PORIN PE=2 SV=1 Length = 277
Score = 62.8 bits (151), Expect = 8e-09 Identities = 27/66 (40%), Positives = 48/66 (72%) Frame = -3
Query: 396 IGKMTIGGLHKLDPQTSVKAKVDTAGLLSAVLEHELKPLVTIGLCAEFNCRSLNEEKPNI 217 + +T+GGL+K+DPQT+VKA+++ G L+A+L+HELKP + + EF+ ++L + P Sbjct: 211 VNTLTVGGLYKIDPQTAVKARLNNTGTLAALLQHELKPKSLLTISGEFDTKAL-DRAPKF 269
Query: 216 GLSVTV 199 GL++ + Sbjct: 270 GLALAL 275
>tr|Q84P97|Q84P97_ORYSJ Os03g0202200 protein OS=Oryza sativa subsp. japonica GN=Os03g0202200 PE=2 SV=1 Length = 277
Score = 59.3 bits (142), Expect = 9e-08 Identities = 25/63 (39%), Positives = 47/63 (74%) Frame = -3
Query: 387 MTIGGLHKLDPQTSVKAKVDTAGLLSAVLEHELKPLVTIGLCAEFNCRSLNEEKPNIGLS 208 +T+GGL+K+DP+T+VKA+++ G L+A+L+HE+KP + + EF+ ++L + P GL+ Sbjct: 214 LTVGGLYKVDPETAVKARLNNTGKLAALLQHEVKPKSVLTISGEFDTKAL-DRPPKFGLA 272
Query: 207 VTV 199 + + Sbjct: 273 LAL 275
>tr|Q10QB6|Q10QB6_ORYSJ Eukaryotic porin family protein, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os03g10510 PE=4 SV=1 Length = 250
Score = 59.3 bits (142), Expect = 9e-08 Identities = 25/63 (39%), Positives = 47/63 (74%) Frame = -3
Query: 387 MTIGGLHKLDPQTSVKAKVDTAGLLSAVLEHELKPLVTIGLCAEFNCRSLNEEKPNIGLS 208 +T+GGL+K+DP+T+VKA+++ G L+A+L+HE+KP + + EF+ ++L + P GL+ Sbjct: 187 LTVGGLYKVDPETAVKARLNNTGKLAALLQHEVKPKSVLTISGEFDTKAL-DRPPKFGLA 245
Query: 207 VTV 199 + + Sbjct: 246 LAL 248
>tr|B8AQH5|B8AQH5_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_10423 PE=4 SV=1 Length = 277
Score = 59.3 bits (142), Expect = 9e-08 Identities = 25/63 (39%), Positives = 47/63 (74%) Frame = -3
Query: 387 MTIGGLHKLDPQTSVKAKVDTAGLLSAVLEHELKPLVTIGLCAEFNCRSLNEEKPNIGLS 208 +T+GGL+K+DP+T+VKA+++ G L+A+L+HE+KP + + EF+ ++L + P GL+ Sbjct: 214 LTVGGLYKVDPETAVKARLNNTGKLAALLQHEVKPKSVLTISGEFDTKAL-DRPPKFGLA 272
Query: 207 VTV 199 + + Sbjct: 273 LAL 275
>tr|A3AF72|A3AF72_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_009444 PE=4 SV=1 Length = 313
Score = 59.3 bits (142), Expect = 9e-08 Identities = 25/63 (39%), Positives = 47/63 (74%) Frame = -3
Query: 387 MTIGGLHKLDPQTSVKAKVDTAGLLSAVLEHELKPLVTIGLCAEFNCRSLNEEKPNIGLS 208 +T+GGL+K+DP+T+VKA+++ G L+A+L+HE+KP + + EF+ ++L + P GL+ Sbjct: 250 LTVGGLYKVDPETAVKARLNNTGKLAALLQHEVKPKSVLTISGEFDTKAL-DRPPKFGLA 308
Query: 207 VTV 199 + + Sbjct: 309 LAL 311
>tr|Q8LA84|Q8LA84_ARATH Putative porin OS=Arabidopsis thaliana PE=2 SV=1 Length = 276
Score = 56.6 bits (135), Expect = 6e-07 Identities = 32/94 (34%), Positives = 55/94 (58%), Gaps = 2/94 (2%) Frame = -3
Query: 474 VNAYCLHEVSS--NTSWALNVDFQPEKKIGKMTIGGLHKLDPQTSVKAKVDTAGLLSAVL 301 +NA H V+ NT+ V + K +T+G H LDP TSVKA+V++AG+ SA++ Sbjct: 182 LNASYYHIVNPLFNTAVGAEVSHKLSSKDSTITVGTQHSLDPLTSVKARVNSAGIASALI 241
Query: 300 EHELKPLVTIGLCAEFNCRSLNEEKPNIGLSVTV 199 +HE KP + E + +S+ ++ +GL++ + Sbjct: 242 QHEWKPKSFFTISGEIDTKSI-DKSAKVGLALAL 274
>tr|A6N1E7|A6N1E7_ORYSI Outer mitochondrial membrane protein porin (Fragment) OS=Oryza sativa subsp. indica PE=2 SV=1 Length = 62
Score = 56.6 bits (135), Expect = 6e-07 Identities = 24/61 (39%), Positives = 45/61 (73%) Frame = -3
Query: 381 IGGLHKLDPQTSVKAKVDTAGLLSAVLEHELKPLVTIGLCAEFNCRSLNEEKPNIGLSVT 202 +GGL+K+DP+T+VKA+++ G L+A+L+HE+KP + + EF+ ++L + P GL++ Sbjct: 1 VGGLYKVDPETAVKARLNNTGKLAALLQHEVKPKSVLTISGEFDTKAL-DRPPKFGLALA 59
Query: 201 V 199 + Sbjct: 60 L 60
>tr|B6SS48|B6SS48_MAIZE Outer mitochondrial membrane protein porin OS=Zea mays PE=2 SV=1 Length = 275
Score = 55.5 bits (132), Expect = 1e-06 Identities = 25/63 (39%), Positives = 45/63 (71%) Frame = -3
Query: 387 MTIGGLHKLDPQTSVKAKVDTAGLLSAVLEHELKPLVTIGLCAEFNCRSLNEEKPNIGLS 208 +T+GGL+ +D QT+VKA+++ G L+A+L+HELKP + + EF+ ++L + P GL+ Sbjct: 212 LTVGGLYTVDSQTAVKARLNNNGTLAALLQHELKPKSLLTISGEFDTKAL-DRPPKFGLA 270
Query: 207 VTV 199 + + Sbjct: 271 LAL 273
>tr|A9TKC4|A9TKC4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_195935 PE=4 SV=1 Length = 276
Score = 55.1 bits (131), Expect = 2e-06 Identities = 33/94 (35%), Positives = 56/94 (59%), Gaps = 2/94 (2%) Frame = -3
Query: 474 VNAYCLHEVS--SNTSWALNVDFQPEKKIGKMTIGGLHKLDPQTSVKAKVDTAGLLSAVL 301 + A LH VS S T+ A + + K T+GGL++LD T+VKA+++ G L+A+L Sbjct: 182 LKASYLHTVSPISRTTMAAEIAHRFSKNENTFTVGGLYELDTLTTVKARLNNHGKLAALL 241
Query: 300 EHELKPLVTIGLCAEFNCRSLNEEKPNIGLSVTV 199 +HE +P + L E + +SL ++ IGL++ + Sbjct: 242 QHEWRPKSLVTLSGEVDTKSL-DKTAKIGLALAL 274
>tr|A9TTQ2|A9TTQ2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_198182 PE=4 SV=1 Length = 276
Score = 53.1 bits (126), Expect = 7e-06 Identities = 33/94 (35%), Positives = 55/94 (58%), Gaps = 2/94 (2%) Frame = -3
Query: 474 VNAYCLHEVS--SNTSWALNVDFQPEKKIGKMTIGGLHKLDPQTSVKAKVDTAGLLSAVL 301 + A LH VS S T+ A + + K T+GGL++LD T+VKA+++ G L+A+L Sbjct: 182 LKASYLHTVSPVSRTTVAAEIAHKFSKNENTFTVGGLYELDTLTTVKARLNNHGKLAALL 241
Query: 300 EHELKPLVTIGLCAEFNCRSLNEEKPNIGLSVTV 199 +HE +P I E + +SL ++ IGL++ + Sbjct: 242 QHEWRPKSLITFSGEVDTKSL-DKTAKIGLALAL 274
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